Wall clock time and date at job start Tue Mar 31 2020 06:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.53472 * 2 1 4 4 C 1.53035 * 109.50043 * 239.89943 * 2 1 3 5 5 N 1.46845 * 109.52687 * 299.24035 * 4 2 1 6 6 C 1.46899 * 111.00235 * 174.16622 * 5 4 2 7 7 C 1.50693 * 109.47146 * 58.15893 * 6 5 4 8 8 C 1.38234 * 120.00508 * 269.72772 * 7 6 5 9 9 C 1.38232 * 120.00112 * 179.79105 * 8 7 6 10 10 C 1.38230 * 119.99992 * 0.46654 * 9 8 7 11 11 C 1.38228 * 120.00291 * 359.76474 * 10 9 8 12 12 C 1.38234 * 119.99861 * 0.02562 * 11 10 9 13 13 C 1.46850 * 111.19664 * 298.25882 * 5 4 2 14 14 C 1.53038 * 109.52273 * 61.74354 * 13 5 4 15 15 C 1.53115 * 109.49962 * 120.09755 * 2 1 3 16 16 H 1.09004 * 109.57263 * 182.21798 * 15 2 1 17 17 O 1.42895 * 109.52477 * 302.38156 * 15 2 1 18 18 C 1.34930 * 116.99835 * 209.68357 * 17 15 2 19 19 H 1.07992 * 120.00433 * 0.02562 * 18 17 15 20 20 C 1.38642 * 119.99770 * 180.02562 * 18 17 15 21 21 N 1.31584 * 119.99842 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99856 * 180.27942 * 20 18 17 23 23 H 1.48497 * 109.47173 * 179.72381 * 22 20 18 24 24 H 1.48506 * 109.46866 * 299.71917 * 22 20 18 25 25 H 1.48501 * 109.47438 * 59.72037 * 22 20 18 26 26 H 1.08995 * 109.47243 * 299.90654 * 1 2 3 27 27 H 1.09007 * 109.47341 * 59.90237 * 1 2 3 28 28 H 1.08994 * 109.47361 * 179.90030 * 1 2 3 29 29 H 1.08999 * 109.46798 * 180.09660 * 3 2 1 30 30 H 1.08998 * 109.47217 * 300.09781 * 3 2 1 31 31 H 1.09001 * 109.47418 * 60.09669 * 3 2 1 32 32 H 1.09007 * 109.45876 * 179.22557 * 4 2 1 33 33 H 1.09001 * 109.45571 * 59.25462 * 4 2 1 34 34 H 1.08999 * 109.47451 * 178.16625 * 6 5 4 35 35 H 1.09002 * 109.46863 * 298.16220 * 6 5 4 36 36 H 1.08006 * 119.99444 * 359.97438 * 8 7 6 37 37 H 1.08001 * 119.99694 * 180.25120 * 9 8 7 38 38 H 1.08000 * 119.99875 * 179.79326 * 10 9 8 39 39 H 1.08005 * 120.00533 * 180.02562 * 11 10 9 40 40 H 1.07999 * 120.00491 * 179.97438 * 12 11 10 41 41 H 1.08994 * 109.46564 * 301.72552 * 13 5 4 42 42 H 1.09004 * 109.45342 * 181.74787 * 13 5 4 43 43 H 1.09002 * 109.50547 * 180.88021 * 14 13 5 44 44 H 1.09001 * 109.53979 * 60.77720 * 14 13 5 45 45 H 0.97005 * 119.99693 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4419 0.0000 4 6 2.0409 -0.7235 -1.2480 5 7 1.5675 -2.1135 -1.2379 6 6 1.9223 -2.7996 -2.4874 7 6 3.4170 -2.7611 -2.6747 8 6 4.0008 -1.7131 -3.3616 9 6 5.3724 -1.6756 -3.5296 10 6 6.1593 -2.6909 -3.0191 11 6 5.5751 -3.7413 -2.3363 12 6 4.2040 -3.7767 -2.1645 13 6 2.0845 -2.8420 -0.0724 14 6 1.5749 -2.1818 1.2108 15 6 2.0411 -0.7238 1.2487 16 1 3.1304 -0.6902 1.2701 17 8 1.5206 -0.0863 2.4169 18 6 2.2763 -0.1421 3.5333 19 1 3.2281 -0.6520 3.5163 20 6 1.8308 0.4553 4.7024 21 7 0.6713 1.0771 4.7231 22 14 2.8805 0.3848 6.2460 23 1 2.1880 1.0989 7.3485 24 1 3.0967 -1.0325 6.6332 25 1 4.1911 1.0317 5.9834 26 1 -0.3633 0.5124 0.8908 27 1 -0.3634 0.5154 -0.8891 28 1 -0.3634 -1.0276 -0.0018 29 1 3.1316 1.4406 -0.0017 30 1 1.6774 1.9566 -0.8891 31 1 1.6803 1.9557 0.8908 32 1 3.1309 -0.7111 -1.2543 33 1 1.6668 -0.2189 -2.1388 34 1 1.5886 -3.8362 -2.4401 35 1 1.4380 -2.3000 -3.3264 36 1 3.3855 -0.9222 -3.7644 37 1 5.8288 -0.8547 -4.0628 38 1 7.2305 -2.6633 -3.1533 39 1 6.1900 -4.5345 -1.9370 40 1 3.7475 -4.5975 -1.6314 41 1 3.1742 -2.8197 -0.0842 42 1 1.7420 -3.8762 -0.1095 43 1 1.9714 -2.7134 2.0758 44 1 0.4856 -2.2161 1.2305 45 1 0.3598 1.4954 5.5410 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224378727.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:30 Heat of formation + Delta-G solvation = -12.618031 kcal Electronic energy + Delta-G solvation = -24140.985173 eV Core-core repulsion = 20930.426627 eV Total energy + Delta-G solvation = -3210.558546 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.14452 -38.64144 -36.07124 -34.11793 -32.02385 -31.45024 -31.00478 -29.92620 -26.54673 -26.48971 -25.61850 -24.32170 -22.71318 -22.35745 -21.38330 -20.53151 -17.99766 -17.44908 -16.80008 -15.79770 -15.37447 -15.18502 -15.01496 -14.52297 -14.28350 -14.08436 -13.88109 -13.51965 -13.21558 -12.93663 -12.64594 -12.52974 -12.18761 -12.00840 -11.62508 -11.44549 -11.30018 -11.26401 -11.21330 -11.05622 -10.87828 -10.82401 -10.68691 -10.33713 -10.22975 -10.10753 -9.48318 -9.24441 -8.97916 -8.91954 -8.82944 -8.08474 -7.87550 -5.88206 -3.49908 1.24589 1.31058 3.34276 3.36687 3.39286 3.66724 4.20722 4.35787 4.72740 4.74720 4.90196 5.01654 5.13697 5.24412 5.29883 5.36428 5.41236 5.49503 5.59475 5.65896 5.73166 5.75641 5.88854 5.92847 5.94089 5.97492 6.04358 6.11622 6.22448 6.35327 6.36571 6.41064 6.46076 6.52581 6.57064 6.66088 6.70464 6.80508 6.91021 6.92806 7.03920 7.10448 7.27415 7.38371 7.39461 7.53426 8.50235 9.55763 10.27043 11.32619 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019456 B = 0.004526 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.796832 B = 6185.402914 C = 6696.677376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.054 4.054 3 C -0.133 4.133 4 C 0.069 3.931 5 N -0.520 5.520 6 C 0.091 3.909 7 C -0.117 4.117 8 C -0.108 4.108 9 C -0.122 4.122 10 C -0.123 4.123 11 C -0.122 4.122 12 C -0.109 4.109 13 C 0.057 3.943 14 C -0.138 4.138 15 C 0.112 3.888 16 H 0.029 0.971 17 O -0.277 6.277 18 C -0.355 4.355 19 H 0.057 0.943 20 C 0.024 3.976 21 N -0.888 5.888 22 Si 0.919 3.081 23 H -0.284 1.284 24 H -0.279 1.279 25 H -0.280 1.280 26 H 0.065 0.935 27 H 0.034 0.966 28 H 0.060 0.940 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.075 0.925 32 H 0.035 0.965 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.033 0.967 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.408 -7.663 -16.965 19.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.055 4.055 3 C -0.191 4.191 4 C -0.059 4.059 5 N -0.242 5.242 6 C -0.037 4.037 7 C -0.119 4.119 8 C -0.127 4.127 9 C -0.140 4.140 10 C -0.142 4.142 11 C -0.140 4.140 12 C -0.128 4.128 13 C -0.071 4.071 14 C -0.176 4.176 15 C 0.052 3.948 16 H 0.047 0.953 17 O -0.191 6.191 18 C -0.435 4.435 19 H 0.075 0.925 20 C -0.174 4.174 21 N -0.532 5.532 22 Si 0.746 3.254 23 H -0.210 1.210 24 H -0.205 1.205 25 H -0.206 1.206 26 H 0.084 0.916 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.053 0.947 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.051 0.949 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.576 -7.460 -16.794 19.204 hybrid contribution 1.874 -0.233 0.788 2.046 sum 7.450 -7.693 -16.006 19.258 Atomic orbital electron populations 1.21636 0.93657 1.01956 1.00714 1.20583 0.97191 0.94763 0.92930 1.21725 0.99813 0.95631 1.01920 1.22197 0.97355 0.88021 0.98343 1.62345 1.58285 1.02371 1.01202 1.21291 0.88650 1.00286 0.93501 1.20765 0.98133 0.95006 0.97957 1.21092 0.94941 0.97914 0.98706 1.21140 0.93952 0.98657 1.00242 1.21128 0.99682 0.94703 0.98664 1.21143 0.94992 0.98625 0.99240 1.21092 0.93787 0.98457 0.99420 1.22148 0.97234 0.97073 0.90616 1.22190 1.02482 0.97958 0.94995 1.21687 0.95094 0.90261 0.87775 0.95252 1.85683 1.44509 1.73405 1.15543 1.20786 1.00635 1.34168 0.87862 0.92496 1.24866 0.96783 0.98233 0.97537 1.70002 1.19132 1.36961 1.27078 0.86142 0.79304 0.77965 0.81949 1.20950 1.20549 1.20569 0.91575 0.94664 0.92077 0.93877 0.93918 0.90621 0.94727 0.91277 0.90082 0.90021 0.86184 0.86241 0.86359 0.86267 0.86239 0.94901 0.91513 0.91759 0.90671 0.93347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.30 7.87 37.16 0.29 -2.01 16 2 C -0.05 -1.01 0.60 -154.43 -0.09 -1.10 16 3 C -0.13 -2.46 8.36 37.16 0.31 -2.15 16 4 C 0.07 1.05 3.27 -3.84 -0.01 1.04 16 5 N -0.52 -7.47 4.14 -236.12 -0.98 -8.44 16 6 C 0.09 1.04 5.56 -4.98 -0.03 1.01 16 7 C -0.12 -1.36 4.03 -104.63 -0.42 -1.79 16 8 C -0.11 -1.22 8.03 -39.59 -0.32 -1.53 16 9 C -0.12 -1.30 10.05 -39.59 -0.40 -1.69 16 10 C -0.12 -1.29 10.05 -39.59 -0.40 -1.69 16 11 C -0.12 -1.31 10.05 -39.59 -0.40 -1.71 16 12 C -0.11 -1.24 8.12 -39.58 -0.32 -1.56 16 13 C 0.06 0.88 4.83 -3.83 -0.02 0.86 16 14 C -0.14 -2.68 5.36 -26.65 -0.14 -2.83 16 15 C 0.11 2.44 1.81 -26.61 -0.05 2.39 16 16 H 0.03 0.68 7.81 -51.93 -0.41 0.27 16 17 O -0.28 -7.67 8.11 -16.51 -0.13 -7.80 16 18 C -0.36 -10.32 9.78 30.88 0.30 -10.02 16 19 H 0.06 1.59 7.65 -52.49 -0.40 1.19 16 20 C 0.02 0.70 5.49 -17.51 -0.10 0.60 16 21 N -0.89 -27.68 13.68 55.48 0.76 -26.92 16 22 Si 0.92 22.26 29.55 -169.99 -5.02 17.23 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H 0.07 1.46 7.63 -51.93 -0.40 1.06 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 1.14 6.01 -51.93 -0.31 0.82 16 29 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.65 7.76 -51.93 -0.40 1.24 16 32 H 0.03 0.55 6.48 -51.92 -0.34 0.22 16 33 H 0.07 0.96 8.12 -51.93 -0.42 0.53 16 34 H 0.08 0.85 8.01 -51.93 -0.42 0.43 16 35 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 36 H 0.12 1.22 8.03 -52.48 -0.42 0.79 16 37 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 40 H 0.12 1.24 8.03 -52.49 -0.42 0.81 16 41 H 0.03 0.52 6.55 -51.93 -0.34 0.18 16 42 H 0.07 0.91 8.06 -51.93 -0.42 0.49 16 43 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.07 1.53 6.58 -51.93 -0.34 1.19 16 45 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 349.89 15.07 5.27 5.27 Total: -1.00 -31.89 349.89 -9.44 -41.33 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -7.55 Total: 1.50 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: -1.79 Total: -22.16 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: -0.22 Total: -35.36 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -0.13 Total: -7.80 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.89 -9.44 -41.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224378727.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.708 kcal (2) G-P(sol) polarization free energy of solvation -31.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds