Wall clock time and date at job start Tue Mar 31 2020 06:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.53472 * 2 1 4 4 C 1.53035 * 109.50043 * 239.89943 * 2 1 3 5 5 N 1.46845 * 109.52687 * 299.24035 * 4 2 1 6 6 C 1.46899 * 111.00235 * 174.16622 * 5 4 2 7 7 C 1.50693 * 109.47146 * 58.15893 * 6 5 4 8 8 C 1.38234 * 120.00508 * 269.72772 * 7 6 5 9 9 C 1.38232 * 120.00112 * 179.79105 * 8 7 6 10 10 C 1.38230 * 119.99992 * 0.46654 * 9 8 7 11 11 C 1.38228 * 120.00291 * 359.76474 * 10 9 8 12 12 C 1.38234 * 119.99861 * 0.02562 * 11 10 9 13 13 C 1.46850 * 111.19664 * 298.25882 * 5 4 2 14 14 C 1.53038 * 109.52273 * 61.74354 * 13 5 4 15 15 C 1.53115 * 109.49962 * 120.09755 * 2 1 3 16 16 H 1.09004 * 109.57263 * 182.21798 * 15 2 1 17 17 O 1.42895 * 109.52477 * 302.38156 * 15 2 1 18 18 C 1.34930 * 116.99835 * 209.68357 * 17 15 2 19 19 H 1.07992 * 120.00433 * 0.02562 * 18 17 15 20 20 C 1.38642 * 119.99770 * 180.02562 * 18 17 15 21 21 N 1.31584 * 119.99842 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99856 * 180.27942 * 20 18 17 23 23 H 1.48497 * 109.47173 * 179.72381 * 22 20 18 24 24 H 1.48506 * 109.46866 * 299.71917 * 22 20 18 25 25 H 1.48501 * 109.47438 * 59.72037 * 22 20 18 26 26 H 1.08995 * 109.47243 * 299.90654 * 1 2 3 27 27 H 1.09007 * 109.47341 * 59.90237 * 1 2 3 28 28 H 1.08994 * 109.47361 * 179.90030 * 1 2 3 29 29 H 1.08999 * 109.46798 * 180.09660 * 3 2 1 30 30 H 1.08998 * 109.47217 * 300.09781 * 3 2 1 31 31 H 1.09001 * 109.47418 * 60.09669 * 3 2 1 32 32 H 1.09007 * 109.45876 * 179.22557 * 4 2 1 33 33 H 1.09001 * 109.45571 * 59.25462 * 4 2 1 34 34 H 1.08999 * 109.47451 * 178.16625 * 6 5 4 35 35 H 1.09002 * 109.46863 * 298.16220 * 6 5 4 36 36 H 1.08006 * 119.99444 * 359.97438 * 8 7 6 37 37 H 1.08001 * 119.99694 * 180.25120 * 9 8 7 38 38 H 1.08000 * 119.99875 * 179.79326 * 10 9 8 39 39 H 1.08005 * 120.00533 * 180.02562 * 11 10 9 40 40 H 1.07999 * 120.00491 * 179.97438 * 12 11 10 41 41 H 1.08994 * 109.46564 * 301.72552 * 13 5 4 42 42 H 1.09004 * 109.45342 * 181.74787 * 13 5 4 43 43 H 1.09002 * 109.50547 * 180.88021 * 14 13 5 44 44 H 1.09001 * 109.53979 * 60.77720 * 14 13 5 45 45 H 0.97005 * 119.99693 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4419 0.0000 4 6 2.0409 -0.7235 -1.2480 5 7 1.5675 -2.1135 -1.2379 6 6 1.9223 -2.7996 -2.4874 7 6 3.4170 -2.7611 -2.6747 8 6 4.0008 -1.7131 -3.3616 9 6 5.3724 -1.6756 -3.5296 10 6 6.1593 -2.6909 -3.0191 11 6 5.5751 -3.7413 -2.3363 12 6 4.2040 -3.7767 -2.1645 13 6 2.0845 -2.8420 -0.0724 14 6 1.5749 -2.1818 1.2108 15 6 2.0411 -0.7238 1.2487 16 1 3.1304 -0.6902 1.2701 17 8 1.5206 -0.0863 2.4169 18 6 2.2763 -0.1421 3.5333 19 1 3.2281 -0.6520 3.5163 20 6 1.8308 0.4553 4.7024 21 7 0.6713 1.0771 4.7231 22 14 2.8805 0.3848 6.2460 23 1 2.1880 1.0989 7.3485 24 1 3.0967 -1.0325 6.6332 25 1 4.1911 1.0317 5.9834 26 1 -0.3633 0.5124 0.8908 27 1 -0.3634 0.5154 -0.8891 28 1 -0.3634 -1.0276 -0.0018 29 1 3.1316 1.4406 -0.0017 30 1 1.6774 1.9566 -0.8891 31 1 1.6803 1.9557 0.8908 32 1 3.1309 -0.7111 -1.2543 33 1 1.6668 -0.2189 -2.1388 34 1 1.5886 -3.8362 -2.4401 35 1 1.4380 -2.3000 -3.3264 36 1 3.3855 -0.9222 -3.7644 37 1 5.8288 -0.8547 -4.0628 38 1 7.2305 -2.6633 -3.1533 39 1 6.1900 -4.5345 -1.9370 40 1 3.7475 -4.5975 -1.6314 41 1 3.1742 -2.8197 -0.0842 42 1 1.7420 -3.8762 -0.1095 43 1 1.9714 -2.7134 2.0758 44 1 0.4856 -2.2161 1.2305 45 1 0.3598 1.4954 5.5410 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224378727.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:29 Heat of formation + Delta-G solvation = -31.218418 kcal Electronic energy + Delta-G solvation = -24141.791746 eV Core-core repulsion = 20930.426627 eV Total energy + Delta-G solvation = -3211.365120 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.29411 -39.80989 -37.70620 -35.63216 -33.76968 -33.08498 -31.80464 -31.14664 -28.04776 -27.69391 -27.28689 -26.14834 -23.87010 -23.42688 -22.58738 -21.60777 -19.72828 -19.37655 -17.71500 -17.33450 -16.56875 -16.38345 -16.15330 -15.98172 -15.72983 -15.58575 -15.35779 -14.60852 -14.34831 -14.31025 -14.09386 -13.76802 -13.56838 -13.30132 -13.28362 -13.08321 -12.79530 -12.71619 -12.61851 -12.35855 -12.25292 -12.17725 -12.05410 -11.92620 -11.76861 -11.68958 -11.15183 -11.09394 -10.81731 -10.01302 -9.78328 -9.67313 -9.22304 -8.12287 -5.78761 0.43610 0.51314 1.37539 1.44296 1.51190 2.34143 2.80972 3.11455 3.19620 3.64643 3.80303 3.89978 3.94929 4.03257 4.15438 4.16908 4.26722 4.29178 4.41564 4.46742 4.51152 4.55926 4.63364 4.68499 4.76515 4.82416 4.89554 4.90109 4.94390 4.99944 5.11070 5.12365 5.14884 5.17199 5.18110 5.24595 5.34988 5.45365 5.55691 5.57974 5.63094 5.66775 5.71551 6.13244 6.13592 6.19494 6.26407 7.31100 8.16019 9.11856 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019456 B = 0.004526 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.796832 B = 6185.402914 C = 6696.677376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.055 4.055 3 C -0.128 4.128 4 C 0.082 3.918 5 N -0.525 5.525 6 C 0.094 3.906 7 C -0.128 4.128 8 C -0.118 4.118 9 C -0.132 4.132 10 C -0.131 4.131 11 C -0.134 4.134 12 C -0.122 4.122 13 C 0.071 3.929 14 C -0.132 4.132 15 C 0.103 3.897 16 H 0.013 0.987 17 O -0.311 6.311 18 C -0.367 4.367 19 H 0.060 0.940 20 C -0.039 4.039 21 N -0.936 5.936 22 Si 0.994 3.006 23 H -0.279 1.279 24 H -0.267 1.267 25 H -0.268 1.268 26 H 0.020 0.980 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.044 0.956 30 H 0.076 0.924 31 H 0.031 0.969 32 H 0.031 0.969 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.131 0.869 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.126 0.874 41 H 0.030 0.970 42 H 0.090 0.910 43 H 0.046 0.954 44 H 0.062 0.938 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.616 -8.567 -18.712 21.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.055 4.055 3 C -0.185 4.185 4 C -0.046 4.046 5 N -0.247 5.247 6 C -0.033 4.033 7 C -0.130 4.130 8 C -0.137 4.137 9 C -0.150 4.150 10 C -0.150 4.150 11 C -0.152 4.152 12 C -0.141 4.141 13 C -0.057 4.057 14 C -0.170 4.170 15 C 0.044 3.956 16 H 0.031 0.969 17 O -0.227 6.227 18 C -0.446 4.446 19 H 0.077 0.923 20 C -0.232 4.232 21 N -0.581 5.581 22 Si 0.817 3.183 23 H -0.204 1.204 24 H -0.192 1.192 25 H -0.193 1.193 26 H 0.040 0.960 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.149 0.851 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.144 0.856 41 H 0.048 0.952 42 H 0.108 0.892 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.798 -8.386 -18.575 21.484 hybrid contribution 1.524 0.023 1.234 1.961 sum 8.322 -8.364 -17.341 20.974 Atomic orbital electron populations 1.21512 0.93797 1.01694 0.99869 1.20625 0.96993 0.94911 0.92974 1.21651 0.99890 0.95639 1.01354 1.22030 0.96998 0.88571 0.96984 1.62303 1.58345 1.01981 1.02041 1.21355 0.88867 1.00901 0.92152 1.20813 0.98136 0.95446 0.98623 1.21318 0.95484 0.98132 0.98746 1.21443 0.94014 0.99257 1.00252 1.21449 1.00829 0.94488 0.98198 1.21425 0.95150 0.99288 0.99315 1.21297 0.94275 0.98835 0.99677 1.21969 0.96870 0.97801 0.89068 1.22059 1.01492 0.96454 0.96995 1.22015 0.94176 0.92016 0.87347 0.96913 1.85636 1.45526 1.74755 1.16739 1.21187 1.00806 1.33800 0.88790 0.92251 1.26015 0.98255 0.97747 1.01139 1.70182 1.21356 1.38376 1.28173 0.84989 0.77609 0.78619 0.77075 1.20388 1.19174 1.19310 0.96030 0.91705 0.92023 0.93657 0.90509 0.95011 0.95120 0.88673 0.88761 0.88356 0.85069 0.84525 0.84552 0.84819 0.85586 0.95172 0.89196 0.93525 0.91970 0.93343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.19 7.87 71.98 0.57 -3.62 16 2 C -0.05 -2.01 0.60 -52.13 -0.03 -2.04 16 3 C -0.13 -4.72 8.36 71.98 0.60 -4.12 16 4 C 0.08 2.32 3.27 86.33 0.28 2.60 16 5 N -0.52 -13.77 4.14 -900.93 -3.73 -17.50 16 6 C 0.09 1.86 5.56 85.56 0.48 2.33 16 7 C -0.13 -2.66 4.03 -19.87 -0.08 -2.74 16 8 C -0.12 -2.34 8.03 22.27 0.18 -2.17 16 9 C -0.13 -2.48 10.05 22.27 0.22 -2.26 16 10 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 11 C -0.13 -2.61 10.05 22.27 0.22 -2.39 16 12 C -0.12 -2.53 8.12 22.27 0.18 -2.35 16 13 C 0.07 2.09 4.83 86.33 0.42 2.51 16 14 C -0.13 -5.21 5.36 30.65 0.16 -5.04 16 15 C 0.10 4.66 1.81 30.67 0.06 4.71 16 16 H 0.01 0.61 7.81 -2.39 -0.02 0.59 16 17 O -0.31 -18.10 8.11 -81.99 -0.66 -18.77 16 18 C -0.37 -22.07 9.78 67.92 0.66 -21.41 16 19 H 0.06 3.42 7.65 -2.91 -0.02 3.40 16 20 C -0.04 -2.31 5.49 84.83 0.47 -1.85 16 21 N -0.94 -60.40 13.68 21.61 0.30 -60.11 16 22 Si 0.99 46.34 29.55 68.60 2.03 48.37 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 26 H 0.02 0.97 7.63 -2.39 -0.02 0.95 16 27 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 28 H 0.06 2.28 6.01 -2.39 -0.01 2.26 16 29 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.03 1.43 7.76 -2.39 -0.02 1.41 16 32 H 0.03 0.91 6.48 -2.38 -0.02 0.90 16 33 H 0.10 2.25 8.12 -2.39 -0.02 2.23 16 34 H 0.09 1.64 8.01 -2.39 -0.02 1.62 16 35 H 0.10 1.65 8.08 -2.39 -0.02 1.63 16 36 H 0.13 2.22 8.03 -2.91 -0.02 2.20 16 37 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 38 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 39 H 0.13 2.10 8.06 -2.91 -0.02 2.07 16 40 H 0.13 2.34 8.03 -2.91 -0.02 2.31 16 41 H 0.03 0.92 6.55 -2.39 -0.02 0.90 16 42 H 0.09 2.26 8.06 -2.38 -0.02 2.24 16 43 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.06 2.59 6.58 -2.39 -0.02 2.58 16 45 H 0.26 15.61 8.31 -92.70 -0.77 14.84 16 Total: -1.00 -71.96 349.89 3.48 -68.48 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.94 Total: 19.59 kcal Atomic # 6 Polarization: -44.67 SS G_CDS: 4.61 Total: -40.06 kcal Atomic # 7 Polarization: -74.18 SS G_CDS: -3.43 Total: -77.61 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.66 Total: -18.77 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -71.96 3.48 -68.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224378727.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.263 kcal (2) G-P(sol) polarization free energy of solvation -71.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds