Wall clock time and date at job start Tue Mar 31 2020 06:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.53447 * 2 1 4 4 C 1.53035 * 109.50493 * 239.90492 * 2 1 3 5 5 N 1.46842 * 109.52655 * 180.87704 * 4 2 1 6 6 C 1.46899 * 111.00224 * 185.83570 * 5 4 2 7 7 C 1.50703 * 109.47107 * 301.83739 * 6 5 4 8 8 C 1.38234 * 119.99770 * 269.72522 * 7 6 5 9 9 C 1.38235 * 119.99869 * 179.74639 * 8 7 6 10 10 C 1.38241 * 119.99812 * 0.54713 * 9 8 7 11 11 C 1.38227 * 120.00044 * 359.70483 * 10 9 8 12 12 C 1.38232 * 119.99860 * 89.99965 * 7 6 5 13 13 C 1.46847 * 111.19604 * 61.73774 * 5 4 2 14 14 C 1.53032 * 109.52682 * 298.25798 * 13 5 4 15 15 C 1.53115 * 109.50502 * 120.09509 * 2 1 3 16 16 H 1.09004 * 109.52022 * 57.69390 * 15 2 1 17 17 O 1.42894 * 109.57866 * 297.53333 * 15 2 1 18 18 C 1.34924 * 117.00108 * 150.28185 * 17 15 2 19 19 H 1.08003 * 120.00083 * 0.02562 * 18 17 15 20 20 C 1.38636 * 120.00242 * 180.02562 * 18 17 15 21 21 N 1.31586 * 119.99680 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00422 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47624 * 89.99801 * 22 20 18 24 24 H 1.48499 * 109.46971 * 210.00380 * 22 20 18 25 25 H 1.48507 * 109.46603 * 329.99775 * 22 20 18 26 26 H 1.09002 * 109.47091 * 299.89638 * 1 2 3 27 27 H 1.08996 * 109.47161 * 59.90426 * 1 2 3 28 28 H 1.09002 * 109.46811 * 179.90754 * 1 2 3 29 29 H 1.08998 * 109.47091 * 180.10339 * 3 2 1 30 30 H 1.09005 * 109.46775 * 300.10048 * 3 2 1 31 31 H 1.09001 * 109.47237 * 60.09866 * 3 2 1 32 32 H 1.09002 * 109.46524 * 60.85698 * 4 2 1 33 33 H 1.09008 * 109.45778 * 300.89161 * 4 2 1 34 34 H 1.09002 * 109.47043 * 61.83719 * 6 5 4 35 35 H 1.09001 * 109.47354 * 181.83780 * 6 5 4 36 36 H 1.08001 * 120.00330 * 359.97438 * 8 7 6 37 37 H 1.08002 * 120.00314 * 180.27289 * 9 8 7 38 38 H 1.08006 * 119.99799 * 179.72658 * 10 9 8 39 39 H 1.07996 * 120.00251 * 179.97438 * 11 10 9 40 40 H 1.07998 * 120.00407 * 0.02562 * 12 7 6 41 41 H 1.09003 * 109.46359 * 58.28217 * 13 5 4 42 42 H 1.09005 * 109.46108 * 178.25024 * 13 5 4 43 43 H 1.08997 * 109.50678 * 179.11835 * 14 13 5 44 44 H 1.08997 * 109.50578 * 299.23922 * 14 13 5 45 45 H 0.97001 * 119.99948 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4420 0.0000 4 6 2.0410 -0.7233 -1.2481 5 7 3.5092 -0.7420 -1.2380 6 6 4.0372 -1.3057 -2.4875 7 6 3.5011 -2.7016 -2.6748 8 6 4.1980 -3.7833 -2.1696 9 6 3.7035 -5.0633 -2.3368 10 6 2.5179 -5.2626 -3.0192 11 6 1.8237 -4.1814 -3.5289 12 6 2.3153 -2.9008 -3.3568 13 6 4.0229 -1.4728 -0.0725 14 6 3.5713 -0.7718 1.2107 15 6 2.0412 -0.7237 1.2487 16 1 1.6453 -1.7391 1.2690 17 8 1.6145 -0.0213 2.4177 18 6 1.4143 -0.7534 3.5332 19 1 1.5774 -1.8209 3.5152 20 6 0.9993 -0.1353 4.7028 21 7 0.8011 1.1654 4.7249 22 14 0.7228 -1.1486 6.2475 23 1 1.9853 -1.2189 7.0261 24 1 -0.3340 -0.5123 7.0742 25 1 0.2970 -2.5203 5.8699 26 1 -0.3633 0.5122 0.8909 27 1 -0.3633 0.5153 -0.8891 28 1 -0.3633 -1.0277 -0.0017 29 1 3.1316 1.4408 -0.0019 30 1 1.6773 1.9567 -0.8891 31 1 1.6803 1.9557 0.8909 32 1 1.6905 -0.2022 -2.1390 33 1 1.6648 -1.7464 -1.2544 34 1 3.7283 -0.6822 -3.3265 35 1 5.1257 -1.3379 -2.4402 36 1 5.1269 -3.6280 -1.6409 37 1 4.2457 -5.9080 -1.9382 38 1 2.1339 -6.2630 -3.1537 39 1 0.8977 -4.3371 -4.0624 40 1 1.7733 -2.0562 -3.7558 41 1 3.6376 -2.4924 -0.0844 42 1 5.1121 -1.4959 -0.1095 43 1 3.9396 -1.3233 2.0757 44 1 3.9678 0.2433 1.2297 45 1 0.5103 1.5978 5.5431 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224378728.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:32 Heat of formation + Delta-G solvation = -12.697216 kcal Electronic energy + Delta-G solvation = -24140.932737 eV Core-core repulsion = 20930.370757 eV Total energy + Delta-G solvation = -3210.561980 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.14501 -38.64162 -36.07265 -34.11967 -32.02527 -31.45132 -31.00542 -29.92635 -26.54844 -26.49063 -25.61888 -24.32383 -22.71431 -22.35760 -21.38519 -20.53167 -17.99850 -17.45155 -16.80040 -15.79902 -15.37440 -15.18791 -15.01609 -14.52488 -14.28611 -14.07991 -13.87919 -13.51978 -13.21627 -12.93706 -12.64642 -12.53058 -12.19378 -12.01014 -11.62645 -11.44648 -11.30054 -11.26403 -11.21249 -11.05664 -10.88572 -10.83649 -10.68824 -10.31764 -10.22623 -10.10846 -9.48519 -9.25234 -8.97880 -8.91464 -8.82958 -8.08537 -7.87703 -5.88510 -3.50150 1.24587 1.31025 3.33540 3.36783 3.40037 3.66698 4.20645 4.35571 4.72742 4.74656 4.90197 5.01622 5.13668 5.24318 5.29688 5.36328 5.41183 5.49411 5.59390 5.65813 5.73114 5.75546 5.88785 5.92816 5.94060 5.97418 6.04271 6.11542 6.22381 6.35290 6.36490 6.41048 6.45988 6.52494 6.56954 6.65952 6.70323 6.80381 6.91005 6.92725 7.03794 7.10303 7.27287 7.38281 7.39370 7.53625 8.49981 9.55572 10.26890 11.32402 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019443 B = 0.004527 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.764512 B = 6184.019503 C = 6695.991890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.054 4.054 3 C -0.122 4.122 4 C 0.069 3.931 5 N -0.520 5.520 6 C 0.091 3.909 7 C -0.117 4.117 8 C -0.109 4.109 9 C -0.122 4.122 10 C -0.123 4.123 11 C -0.122 4.122 12 C -0.108 4.108 13 C 0.057 3.943 14 C -0.138 4.138 15 C 0.112 3.888 16 H 0.029 0.971 17 O -0.277 6.277 18 C -0.354 4.354 19 H 0.058 0.942 20 C 0.023 3.977 21 N -0.888 5.888 22 Si 0.918 3.082 23 H -0.282 1.282 24 H -0.284 1.284 25 H -0.277 1.277 26 H 0.075 0.925 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.060 0.940 30 H 0.034 0.966 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.035 0.965 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.033 0.967 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.077 -8.611 -16.993 19.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.055 4.055 3 C -0.180 4.180 4 C -0.059 4.059 5 N -0.242 5.242 6 C -0.037 4.037 7 C -0.119 4.119 8 C -0.128 4.128 9 C -0.140 4.140 10 C -0.142 4.142 11 C -0.140 4.140 12 C -0.126 4.126 13 C -0.071 4.071 14 C -0.176 4.176 15 C 0.052 3.948 16 H 0.047 0.953 17 O -0.192 6.192 18 C -0.434 4.434 19 H 0.076 0.924 20 C -0.175 4.175 21 N -0.532 5.532 22 Si 0.746 3.254 23 H -0.208 1.208 24 H -0.210 1.210 25 H -0.202 1.202 26 H 0.094 0.906 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.053 0.947 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.051 0.949 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.165 -7.765 -16.826 19.237 hybrid contribution -0.401 -1.833 0.792 2.037 sum 4.763 -9.599 -16.034 19.285 Atomic orbital electron populations 1.21726 0.94527 1.00919 1.01919 1.20585 0.95207 0.96750 0.92932 1.21638 1.01295 0.94321 1.00713 1.22198 0.86612 0.98772 0.98339 1.62341 1.08863 1.51798 1.01203 1.21293 0.99834 0.89103 0.93496 1.20765 0.95887 0.97210 0.98004 1.21090 0.99891 0.92334 0.99442 1.21146 0.96547 0.97062 0.99244 1.21132 0.95584 0.98819 0.98644 1.21141 0.99799 0.92819 1.00234 1.21093 0.95788 0.97059 0.98709 1.22146 0.98910 0.95394 0.90616 1.22188 0.98906 1.01531 0.94999 1.21685 0.91525 0.93841 0.87764 0.95255 1.85680 1.85091 1.32842 1.15545 1.20832 1.44155 0.90501 0.87878 0.92443 1.24868 0.99219 0.95827 0.97536 1.70013 1.48215 1.07997 1.26945 0.86066 0.77894 0.79055 0.82370 1.20849 1.20995 1.20243 0.90622 0.93915 0.93875 0.92075 0.94660 0.91578 0.91275 0.94720 0.90020 0.90083 0.86240 0.86268 0.86358 0.86242 0.86182 0.94909 0.91512 0.91754 0.90670 0.93401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 8.36 37.16 0.31 -2.15 16 2 C -0.05 -1.01 0.60 -154.43 -0.09 -1.10 16 3 C -0.12 -2.30 7.87 37.16 0.29 -2.01 16 4 C 0.07 1.05 3.26 -3.84 -0.01 1.03 16 5 N -0.52 -7.46 4.14 -236.11 -0.98 -8.44 16 6 C 0.09 1.04 5.56 -4.98 -0.03 1.01 16 7 C -0.12 -1.36 4.03 -104.62 -0.42 -1.79 16 8 C -0.11 -1.24 8.13 -39.58 -0.32 -1.56 16 9 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 10 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 11 C -0.12 -1.30 10.05 -39.58 -0.40 -1.69 16 12 C -0.11 -1.22 8.02 -39.58 -0.32 -1.53 16 13 C 0.06 0.88 4.84 -3.84 -0.02 0.86 16 14 C -0.14 -2.68 5.36 -26.65 -0.14 -2.82 16 15 C 0.11 2.44 1.80 -26.61 -0.05 2.39 16 16 H 0.03 0.67 7.81 -51.93 -0.41 0.27 16 17 O -0.28 -7.67 8.11 -16.49 -0.13 -7.81 16 18 C -0.35 -10.29 9.78 30.88 0.30 -9.99 16 19 H 0.06 1.61 7.65 -52.48 -0.40 1.21 16 20 C 0.02 0.68 5.49 -17.51 -0.10 0.59 16 21 N -0.89 -27.68 13.68 55.48 0.76 -26.92 16 22 Si 0.92 22.26 29.55 -169.99 -5.02 17.23 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H 0.07 1.64 7.76 -51.93 -0.40 1.24 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 1.14 6.01 -51.93 -0.31 0.82 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 1.46 7.63 -51.93 -0.40 1.06 16 32 H 0.07 0.96 8.12 -51.93 -0.42 0.53 16 33 H 0.03 0.55 6.47 -51.92 -0.34 0.22 16 34 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 35 H 0.08 0.85 8.00 -51.93 -0.42 0.43 16 36 H 0.12 1.23 8.05 -52.49 -0.42 0.81 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 39 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.12 1.22 8.02 -52.49 -0.42 0.80 16 41 H 0.03 0.52 6.56 -51.93 -0.34 0.18 16 42 H 0.07 0.91 8.06 -51.93 -0.42 0.49 16 43 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.07 1.53 6.58 -51.93 -0.34 1.19 16 45 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 349.91 15.07 5.27 5.27 Total: -1.00 -31.92 349.91 -9.44 -41.36 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -7.55 Total: 1.45 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: -1.79 Total: -22.14 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: -0.22 Total: -35.36 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -0.13 Total: -7.81 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.92 -9.44 -41.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224378728.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.661 kcal (2) G-P(sol) polarization free energy of solvation -31.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds