Wall clock time and date at job start Tue Mar 31 2020 06:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.53447 * 2 1 4 4 C 1.53035 * 109.50493 * 239.90492 * 2 1 3 5 5 N 1.46842 * 109.52655 * 180.87704 * 4 2 1 6 6 C 1.46899 * 111.00224 * 185.83570 * 5 4 2 7 7 C 1.50703 * 109.47107 * 301.83739 * 6 5 4 8 8 C 1.38234 * 119.99770 * 269.72522 * 7 6 5 9 9 C 1.38235 * 119.99869 * 179.74639 * 8 7 6 10 10 C 1.38241 * 119.99812 * 0.54713 * 9 8 7 11 11 C 1.38227 * 120.00044 * 359.70483 * 10 9 8 12 12 C 1.38232 * 119.99860 * 89.99965 * 7 6 5 13 13 C 1.46847 * 111.19604 * 61.73774 * 5 4 2 14 14 C 1.53032 * 109.52682 * 298.25798 * 13 5 4 15 15 C 1.53115 * 109.50502 * 120.09509 * 2 1 3 16 16 H 1.09004 * 109.52022 * 57.69390 * 15 2 1 17 17 O 1.42894 * 109.57866 * 297.53333 * 15 2 1 18 18 C 1.34924 * 117.00108 * 150.28185 * 17 15 2 19 19 H 1.08003 * 120.00083 * 0.02562 * 18 17 15 20 20 C 1.38636 * 120.00242 * 180.02562 * 18 17 15 21 21 N 1.31586 * 119.99680 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00422 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47624 * 89.99801 * 22 20 18 24 24 H 1.48499 * 109.46971 * 210.00380 * 22 20 18 25 25 H 1.48507 * 109.46603 * 329.99775 * 22 20 18 26 26 H 1.09002 * 109.47091 * 299.89638 * 1 2 3 27 27 H 1.08996 * 109.47161 * 59.90426 * 1 2 3 28 28 H 1.09002 * 109.46811 * 179.90754 * 1 2 3 29 29 H 1.08998 * 109.47091 * 180.10339 * 3 2 1 30 30 H 1.09005 * 109.46775 * 300.10048 * 3 2 1 31 31 H 1.09001 * 109.47237 * 60.09866 * 3 2 1 32 32 H 1.09002 * 109.46524 * 60.85698 * 4 2 1 33 33 H 1.09008 * 109.45778 * 300.89161 * 4 2 1 34 34 H 1.09002 * 109.47043 * 61.83719 * 6 5 4 35 35 H 1.09001 * 109.47354 * 181.83780 * 6 5 4 36 36 H 1.08001 * 120.00330 * 359.97438 * 8 7 6 37 37 H 1.08002 * 120.00314 * 180.27289 * 9 8 7 38 38 H 1.08006 * 119.99799 * 179.72658 * 10 9 8 39 39 H 1.07996 * 120.00251 * 179.97438 * 11 10 9 40 40 H 1.07998 * 120.00407 * 0.02562 * 12 7 6 41 41 H 1.09003 * 109.46359 * 58.28217 * 13 5 4 42 42 H 1.09005 * 109.46108 * 178.25024 * 13 5 4 43 43 H 1.08997 * 109.50678 * 179.11835 * 14 13 5 44 44 H 1.08997 * 109.50578 * 299.23922 * 14 13 5 45 45 H 0.97001 * 119.99948 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4420 0.0000 4 6 2.0410 -0.7233 -1.2481 5 7 3.5092 -0.7420 -1.2380 6 6 4.0372 -1.3057 -2.4875 7 6 3.5011 -2.7016 -2.6748 8 6 4.1980 -3.7833 -2.1696 9 6 3.7035 -5.0633 -2.3368 10 6 2.5179 -5.2626 -3.0192 11 6 1.8237 -4.1814 -3.5289 12 6 2.3153 -2.9008 -3.3568 13 6 4.0229 -1.4728 -0.0725 14 6 3.5713 -0.7718 1.2107 15 6 2.0412 -0.7237 1.2487 16 1 1.6453 -1.7391 1.2690 17 8 1.6145 -0.0213 2.4177 18 6 1.4143 -0.7534 3.5332 19 1 1.5774 -1.8209 3.5152 20 6 0.9993 -0.1353 4.7028 21 7 0.8011 1.1654 4.7249 22 14 0.7228 -1.1486 6.2475 23 1 1.9853 -1.2189 7.0261 24 1 -0.3340 -0.5123 7.0742 25 1 0.2970 -2.5203 5.8699 26 1 -0.3633 0.5122 0.8909 27 1 -0.3633 0.5153 -0.8891 28 1 -0.3633 -1.0277 -0.0017 29 1 3.1316 1.4408 -0.0019 30 1 1.6773 1.9567 -0.8891 31 1 1.6803 1.9557 0.8909 32 1 1.6905 -0.2022 -2.1390 33 1 1.6648 -1.7464 -1.2544 34 1 3.7283 -0.6822 -3.3265 35 1 5.1257 -1.3379 -2.4402 36 1 5.1269 -3.6280 -1.6409 37 1 4.2457 -5.9080 -1.9382 38 1 2.1339 -6.2630 -3.1537 39 1 0.8977 -4.3371 -4.0624 40 1 1.7733 -2.0562 -3.7558 41 1 3.6376 -2.4924 -0.0844 42 1 5.1121 -1.4959 -0.1095 43 1 3.9396 -1.3233 2.0757 44 1 3.9678 0.2433 1.2297 45 1 0.5103 1.5978 5.5431 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224378728.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:32 Heat of formation + Delta-G solvation = -31.323998 kcal Electronic energy + Delta-G solvation = -24141.740455 eV Core-core repulsion = 20930.370757 eV Total energy + Delta-G solvation = -3211.369698 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.29448 -39.80956 -37.70811 -35.63287 -33.77121 -33.08584 -31.80523 -31.14585 -28.04756 -27.69506 -27.28872 -26.14957 -23.87107 -23.42620 -22.58865 -21.60746 -19.72960 -19.37894 -17.71582 -17.33815 -16.56899 -16.38457 -16.15190 -15.98028 -15.72804 -15.58591 -15.35902 -14.60829 -14.35534 -14.31055 -14.09211 -13.77066 -13.56821 -13.30216 -13.28350 -13.08870 -12.79892 -12.72154 -12.63045 -12.35957 -12.24827 -12.14898 -12.05136 -11.93187 -11.77056 -11.68910 -11.15632 -11.09959 -10.81255 -10.01521 -9.78293 -9.67295 -9.22326 -8.12623 -5.79021 0.43619 0.51291 1.37539 1.43251 1.51898 2.33838 2.80960 3.11443 3.19439 3.64416 3.80326 3.89968 3.94871 4.03267 4.15428 4.16887 4.26688 4.29179 4.41571 4.46754 4.51155 4.55898 4.63331 4.68496 4.76494 4.82407 4.89548 4.90133 4.94353 4.99945 5.11062 5.12318 5.14875 5.17189 5.18138 5.24590 5.34960 5.45330 5.55670 5.57933 5.63085 5.66739 5.71497 6.13245 6.13588 6.19489 6.26364 7.30903 8.15870 9.11764 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019443 B = 0.004527 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.764512 B = 6184.019503 C = 6695.991890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.055 4.055 3 C -0.112 4.112 4 C 0.082 3.918 5 N -0.525 5.525 6 C 0.094 3.906 7 C -0.128 4.128 8 C -0.122 4.122 9 C -0.134 4.134 10 C -0.132 4.132 11 C -0.132 4.132 12 C -0.118 4.118 13 C 0.071 3.929 14 C -0.132 4.132 15 C 0.103 3.897 16 H 0.013 0.987 17 O -0.311 6.311 18 C -0.365 4.365 19 H 0.060 0.940 20 C -0.039 4.039 21 N -0.936 5.936 22 Si 0.994 3.006 23 H -0.272 1.272 24 H -0.279 1.279 25 H -0.264 1.264 26 H 0.031 0.969 27 H 0.076 0.924 28 H 0.044 0.956 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.020 0.980 32 H 0.095 0.905 33 H 0.031 0.969 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.126 0.874 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.131 0.869 41 H 0.030 0.970 42 H 0.090 0.910 43 H 0.046 0.954 44 H 0.062 0.938 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.534 -10.037 -18.736 21.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.055 4.055 3 C -0.169 4.169 4 C -0.046 4.046 5 N -0.247 5.247 6 C -0.033 4.033 7 C -0.130 4.130 8 C -0.141 4.141 9 C -0.152 4.152 10 C -0.150 4.150 11 C -0.150 4.150 12 C -0.137 4.137 13 C -0.057 4.057 14 C -0.170 4.170 15 C 0.045 3.955 16 H 0.031 0.969 17 O -0.227 6.227 18 C -0.445 4.445 19 H 0.077 0.923 20 C -0.232 4.232 21 N -0.581 5.581 22 Si 0.817 3.183 23 H -0.197 1.197 24 H -0.204 1.204 25 H -0.188 1.188 26 H 0.050 0.950 27 H 0.095 0.905 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.040 0.960 32 H 0.113 0.887 33 H 0.049 0.951 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.144 0.856 37 H 0.152 0.848 38 H 0.154 0.846 39 H 0.155 0.845 40 H 0.149 0.851 41 H 0.048 0.952 42 H 0.108 0.892 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.638 -9.212 -18.602 21.510 hybrid contribution -0.527 -1.421 1.238 1.957 sum 5.111 -10.633 -17.364 20.993 Atomic orbital electron populations 1.21653 0.94644 1.00884 1.01357 1.20627 0.95250 0.96661 0.92971 1.21514 1.01185 0.94306 0.99870 1.22032 0.87357 0.98220 0.96983 1.62299 1.08140 1.52188 1.02042 1.21357 1.00528 0.89242 0.92146 1.20813 0.96307 0.97232 0.98668 1.21295 1.00375 0.92712 0.99691 1.21429 0.96944 0.97491 0.99319 1.21453 0.95476 0.99858 0.98182 1.21444 1.00518 0.92759 1.00244 1.21319 0.95820 0.97793 0.98752 1.21967 1.00162 0.94504 0.89072 1.22057 0.96890 1.01056 0.97003 1.22013 0.93184 0.93019 0.87334 0.96935 1.85632 1.85781 1.34510 1.16745 1.21220 1.43674 0.90757 0.88808 0.92256 1.26015 0.98889 0.97150 1.01129 1.70187 1.49696 1.10144 1.28085 0.84915 0.78143 0.77704 0.77493 1.19727 1.20405 1.18838 0.95007 0.90504 0.93658 0.92019 0.91700 0.96030 0.88668 0.95116 0.88356 0.88758 0.85574 0.84821 0.84553 0.84527 0.85074 0.95191 0.89191 0.93500 0.91960 0.93345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.72 8.36 71.98 0.60 -4.12 16 2 C -0.05 -2.01 0.60 -52.13 -0.03 -2.05 16 3 C -0.11 -4.18 7.87 71.98 0.57 -3.62 16 4 C 0.08 2.31 3.26 86.33 0.28 2.60 16 5 N -0.52 -13.77 4.14 -900.93 -3.73 -17.50 16 6 C 0.09 1.86 5.56 85.56 0.48 2.33 16 7 C -0.13 -2.66 4.03 -19.87 -0.08 -2.75 16 8 C -0.12 -2.52 8.13 22.27 0.18 -2.34 16 9 C -0.13 -2.61 10.05 22.27 0.22 -2.39 16 10 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 11 C -0.13 -2.48 10.05 22.27 0.22 -2.26 16 12 C -0.12 -2.35 8.02 22.27 0.18 -2.17 16 13 C 0.07 2.09 4.84 86.32 0.42 2.51 16 14 C -0.13 -5.21 5.36 30.65 0.16 -5.04 16 15 C 0.10 4.66 1.80 30.67 0.06 4.71 16 16 H 0.01 0.60 7.81 -2.39 -0.02 0.58 16 17 O -0.31 -18.11 8.11 -81.93 -0.66 -18.77 16 18 C -0.37 -22.00 9.78 67.92 0.66 -21.33 16 19 H 0.06 3.43 7.65 -2.91 -0.02 3.40 16 20 C -0.04 -2.33 5.49 84.82 0.47 -1.87 16 21 N -0.94 -60.41 13.68 21.61 0.30 -60.11 16 22 Si 0.99 46.38 29.55 68.60 2.03 48.41 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 24 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 25 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 26 H 0.03 1.43 7.76 -2.39 -0.02 1.41 16 27 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 2.28 6.01 -2.39 -0.01 2.26 16 30 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.02 0.97 7.63 -2.39 -0.02 0.95 16 32 H 0.10 2.25 8.12 -2.39 -0.02 2.23 16 33 H 0.03 0.91 6.47 -2.38 -0.02 0.90 16 34 H 0.10 1.65 8.09 -2.39 -0.02 1.63 16 35 H 0.09 1.63 8.00 -2.39 -0.02 1.62 16 36 H 0.13 2.33 8.05 -2.91 -0.02 2.31 16 37 H 0.13 2.10 8.06 -2.91 -0.02 2.07 16 38 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 39 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 40 H 0.13 2.22 8.02 -2.91 -0.02 2.20 16 41 H 0.03 0.91 6.56 -2.39 -0.02 0.90 16 42 H 0.09 2.25 8.06 -2.38 -0.02 2.24 16 43 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.06 2.60 6.58 -2.39 -0.02 2.58 16 45 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -72.01 349.91 3.48 -68.53 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 0.94 Total: 19.46 kcal Atomic # 6 Polarization: -44.62 SS G_CDS: 4.61 Total: -40.01 kcal Atomic # 7 Polarization: -74.18 SS G_CDS: -3.43 Total: -77.61 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.66 Total: -18.77 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -72.01 3.48 -68.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224378728.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.205 kcal (2) G-P(sol) polarization free energy of solvation -72.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds