Wall clock time and date at job start Tue Mar 31 2020 06:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.47562 * 2 1 4 4 C 1.53000 * 109.47262 * 240.00041 * 2 1 3 5 5 C 1.50700 * 109.47100 * 120.00421 * 2 1 3 6 6 C 1.38263 * 119.94557 * 59.99552 * 5 2 1 7 7 C 1.38143 * 120.05419 * 180.02562 * 6 5 2 8 8 C 1.38730 * 119.94684 * 359.97438 * 7 6 5 9 9 O 1.35901 * 120.05822 * 180.02562 * 8 7 6 10 10 C 1.42907 * 116.99831 * 5.72769 * 9 8 7 11 11 C 1.53512 * 114.16688 * 156.74383 * 10 9 8 12 12 N 1.47486 * 87.93260 * 87.81475 * 11 10 9 13 13 C 1.46894 * 110.99862 * 138.70269 * 12 11 10 14 14 C 1.50705 * 109.46758 * 170.00231 * 13 12 11 15 15 H 1.07997 * 120.00121 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99540 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99400 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00293 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.46690 * 269.99953 * 18 16 14 20 20 H 1.48493 * 109.47092 * 29.99781 * 18 16 14 21 21 H 1.48500 * 109.46943 * 150.00255 * 18 16 14 22 22 C 1.47481 * 87.83479 * 27.00646 * 12 11 10 23 23 C 1.38730 * 119.88672 * 0.27622 * 8 7 6 24 24 C 1.38149 * 119.94393 * 359.46896 * 23 8 7 25 25 H 1.09003 * 109.47161 * 299.99926 * 1 2 3 26 26 H 1.09002 * 109.47118 * 59.99718 * 1 2 3 27 27 H 1.08996 * 109.47822 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47701 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47134 * 300.00272 * 3 2 1 30 30 H 1.09000 * 109.47324 * 59.99882 * 3 2 1 31 31 H 1.09002 * 109.47142 * 300.00604 * 4 2 1 32 32 H 1.09002 * 109.47375 * 59.99989 * 4 2 1 33 33 H 1.08990 * 109.47707 * 180.02562 * 4 2 1 34 34 H 1.08001 * 119.97152 * 359.97438 * 6 5 2 35 35 H 1.07999 * 120.02775 * 179.97438 * 7 6 5 36 36 H 1.08996 * 113.25289 * 23.79478 * 10 9 8 37 37 H 1.08999 * 113.47878 * 333.04390 * 11 10 9 38 38 H 1.09000 * 113.47592 * 202.58041 * 11 10 9 39 39 H 1.08993 * 109.47557 * 49.99841 * 13 12 11 40 40 H 1.08999 * 109.47097 * 289.99722 * 13 12 11 41 41 H 0.97002 * 120.00039 * 179.97438 * 17 16 14 42 42 H 1.09007 * 113.47525 * 87.75708 * 22 12 11 43 43 H 1.09001 * 113.47594 * 218.22648 * 22 12 11 44 44 H 1.08000 * 120.02876 * 179.72013 * 23 8 7 45 45 H 1.08001 * 119.97184 * 180.22746 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7105 1.2304 6 6 1.6975 -2.0342 1.4480 7 6 2.1563 -2.6875 2.5754 8 6 2.9540 -2.0145 3.4894 9 8 3.4070 -2.6552 4.5990 10 6 3.1297 -4.0535 4.6994 11 6 4.0917 -4.8206 5.6174 12 7 3.1982 -4.4880 6.7427 13 6 3.0354 -5.6372 7.6430 14 6 2.3255 -5.1961 8.8971 15 1 2.0257 -4.1651 9.0137 16 6 2.0587 -6.1088 9.8955 17 7 1.4397 -5.7238 10.9901 18 14 2.5766 -7.8922 9.6935 19 1 1.4804 -8.6554 9.0447 20 1 3.7954 -7.9609 8.8480 21 1 2.8655 -8.4778 11.0272 22 6 2.0917 -4.4174 5.7702 23 6 3.2842 -0.6849 3.2713 24 6 2.8272 -0.0375 2.1397 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6765 -1.7489 -1.2493 32 1 1.6767 -0.2074 -2.1393 33 1 3.1299 -0.7217 -1.2491 34 1 1.0761 -2.5576 0.7365 35 1 1.8942 -3.7214 2.7452 36 1 2.9601 -4.5290 3.7334 37 1 5.0771 -4.3613 5.6948 38 1 4.1393 -5.8880 5.4017 39 1 4.0154 -6.0376 7.9020 40 1 2.4478 -6.4084 7.1451 41 1 1.2516 -6.3659 11.6924 42 1 1.6055 -5.3772 5.5952 43 1 1.3822 -3.6162 5.9771 44 1 3.9013 -0.1574 3.9836 45 1 3.0871 0.9966 1.9677 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225256884.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:21 Heat of formation + Delta-G solvation = 23.279750 kcal Electronic energy + Delta-G solvation = -22485.332575 eV Core-core repulsion = 19276.330673 eV Total energy + Delta-G solvation = -3209.001902 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.61484 -39.52722 -37.65004 -35.38387 -32.78407 -31.28962 -29.99889 -28.83991 -27.64185 -27.49068 -25.78668 -25.46821 -22.92981 -22.70525 -21.17199 -19.86322 -19.14336 -18.04238 -16.79426 -16.04992 -15.85904 -15.48736 -14.98482 -14.61130 -14.51708 -14.45106 -14.01281 -13.85389 -13.49236 -13.44786 -12.96340 -12.77719 -12.62567 -12.44854 -12.28050 -12.17614 -11.95682 -11.79694 -11.66133 -11.23061 -11.17507 -10.98432 -10.87121 -10.66770 -10.44568 -10.11956 -10.01534 -9.79594 -9.37053 -9.01689 -8.59562 -8.03198 -7.97531 -6.06002 -4.03588 1.32463 1.41893 3.21808 3.24680 3.32908 3.33669 3.71559 4.39326 4.41204 4.50531 4.60096 4.65031 4.76005 4.80486 4.91979 5.06572 5.10727 5.23668 5.29277 5.30730 5.35813 5.39437 5.49970 5.58416 5.61764 5.63295 5.70018 5.70734 5.73193 5.81586 5.91693 5.99327 6.01176 6.04153 6.05788 6.19015 6.34878 6.39335 6.43292 6.58641 6.64326 6.80636 7.28034 7.58460 7.66755 7.80446 8.61950 9.05575 9.54662 11.07474 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.037063 B = 0.002689 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.280397 B =10411.329680 C =10439.926118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.024 4.024 3 C -0.144 4.144 4 C -0.138 4.138 5 C -0.118 4.118 6 C -0.075 4.075 7 C -0.209 4.209 8 C 0.135 3.865 9 O -0.276 6.276 10 C 0.046 3.954 11 C -0.004 4.004 12 N -0.444 5.444 13 C 0.125 3.875 14 C -0.506 4.506 15 H 0.081 0.919 16 C 0.067 3.933 17 N -0.899 5.899 18 Si 0.875 3.125 19 H -0.277 1.277 20 H -0.268 1.268 21 H -0.284 1.284 22 C -0.007 4.007 23 C -0.153 4.153 24 C -0.082 4.082 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.120 0.880 35 H 0.129 0.871 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.029 0.971 40 H -0.004 1.004 41 H 0.264 0.736 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.130 0.870 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.274 9.347 -25.859 27.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.024 4.024 3 C -0.201 4.201 4 C -0.195 4.195 5 C -0.118 4.118 6 C -0.093 4.093 7 C -0.227 4.227 8 C 0.089 3.911 9 O -0.188 6.188 10 C -0.011 4.011 11 C -0.133 4.133 12 N -0.166 5.166 13 C -0.002 4.002 14 C -0.544 4.544 15 H 0.099 0.901 16 C -0.135 4.135 17 N -0.538 5.538 18 Si 0.703 3.297 19 H -0.203 1.203 20 H -0.193 1.193 21 H -0.210 1.210 22 C -0.136 4.136 23 C -0.171 4.171 24 C -0.100 4.100 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.138 0.862 35 H 0.147 0.853 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.047 0.953 40 H 0.014 0.986 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.105 0.895 44 H 0.148 0.852 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.467 9.891 -25.010 26.935 hybrid contribution -0.134 -2.059 -0.330 2.089 sum 1.333 7.832 -25.340 26.556 Atomic orbital electron populations 1.21897 0.93930 1.02015 1.01762 1.19398 0.95494 0.94859 0.92653 1.21963 1.01173 0.95127 1.01877 1.21892 1.01218 1.00166 0.96246 1.19631 1.00827 0.94341 0.97011 1.20704 0.98310 0.93964 0.96309 1.21279 1.03321 1.01193 0.96943 1.19161 0.93208 0.92471 0.86296 1.86195 1.72955 1.22022 1.37661 1.23642 0.99306 0.80068 0.98059 1.24062 0.99355 0.97968 0.91941 1.69049 1.03402 1.37311 1.06851 1.20772 0.96897 0.88371 0.94168 1.20958 1.36306 0.98193 0.98992 0.90132 1.24936 0.94887 0.98515 0.95123 1.69895 1.41717 1.34872 1.07345 0.86858 0.79422 0.85713 0.77737 1.20307 1.19266 1.21014 1.24276 0.96019 1.01696 0.91628 1.20461 1.04643 0.92516 0.99501 1.20947 0.96489 0.99694 0.92876 0.92412 0.92584 0.92511 0.92273 0.92539 0.92200 0.92550 0.92580 0.92534 0.86233 0.85302 0.89551 0.89389 0.90556 0.95305 0.98628 0.92631 0.90590 0.89517 0.85235 0.85251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 8.29 37.15 0.31 -0.73 16 2 C -0.02 -0.19 0.85 -155.67 -0.13 -0.32 16 3 C -0.14 -0.99 7.13 37.15 0.26 -0.73 16 4 C -0.14 -0.98 8.29 37.16 0.31 -0.67 16 5 C -0.12 -1.20 4.76 -104.60 -0.50 -1.70 16 6 C -0.07 -0.80 8.70 -39.61 -0.34 -1.15 16 7 C -0.21 -2.59 9.03 -39.43 -0.36 -2.94 16 8 C 0.13 1.92 6.68 -39.22 -0.26 1.66 16 9 O -0.28 -4.59 10.19 -19.43 -0.20 -4.79 16 10 C 0.05 0.71 4.06 -26.20 -0.11 0.61 16 11 C 0.00 -0.07 7.52 -7.54 -0.06 -0.12 16 12 N -0.44 -9.65 6.32 -246.10 -1.55 -11.20 16 13 C 0.13 3.07 3.64 -4.98 -0.02 3.05 16 14 C -0.51 -14.86 9.94 -34.44 -0.34 -15.21 16 15 H 0.08 2.62 8.06 -52.49 -0.42 2.20 16 16 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 17 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 18 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 20 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 C -0.01 -0.12 7.56 -7.54 -0.06 -0.18 16 23 C -0.15 -1.95 9.99 -39.43 -0.39 -2.35 16 24 C -0.08 -0.88 8.97 -39.60 -0.36 -1.24 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.42 7.38 -51.93 -0.38 0.04 16 28 H 0.06 0.39 7.51 -51.93 -0.39 0.00 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.42 7.51 -51.93 -0.39 0.03 16 31 H 0.06 0.39 7.38 -51.93 -0.38 0.01 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.12 1.06 7.09 -52.49 -0.37 0.68 16 35 H 0.13 1.46 5.89 -52.49 -0.31 1.15 16 36 H 0.09 1.07 5.90 -51.93 -0.31 0.77 16 37 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.08 1.15 7.91 -51.93 -0.41 0.74 16 39 H 0.03 0.71 7.14 -51.93 -0.37 0.34 16 40 H 0.00 -0.09 6.73 -51.93 -0.35 -0.44 16 41 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 42 H 0.08 1.30 7.42 -51.93 -0.39 0.91 16 43 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 44 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 45 H 0.13 1.11 5.88 -52.49 -0.31 0.80 16 LS Contribution 354.73 15.07 5.35 5.35 Total: -1.00 -32.37 354.73 -9.77 -42.14 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -7.33 Total: -0.95 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -2.14 Total: -20.14 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: -0.78 Total: -38.46 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: -0.20 Total: -4.79 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.37 -9.77 -42.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225256884.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.419 kcal (2) G-P(sol) polarization free energy of solvation -32.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds