Wall clock time and date at job start Tue Mar 31 2020 06:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.47562 * 2 1 4 4 C 1.53000 * 109.47262 * 240.00041 * 2 1 3 5 5 C 1.50700 * 109.47100 * 120.00421 * 2 1 3 6 6 C 1.38263 * 119.94557 * 59.99552 * 5 2 1 7 7 C 1.38143 * 120.05419 * 180.02562 * 6 5 2 8 8 C 1.38730 * 119.94684 * 359.97438 * 7 6 5 9 9 O 1.35901 * 120.05822 * 180.02562 * 8 7 6 10 10 C 1.42907 * 116.99831 * 5.72769 * 9 8 7 11 11 C 1.53512 * 114.16688 * 156.74383 * 10 9 8 12 12 N 1.47486 * 87.93260 * 87.81475 * 11 10 9 13 13 C 1.46894 * 110.99862 * 138.70269 * 12 11 10 14 14 C 1.50705 * 109.46758 * 170.00231 * 13 12 11 15 15 H 1.07997 * 120.00121 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99540 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99400 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00293 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.46690 * 269.99953 * 18 16 14 20 20 H 1.48493 * 109.47092 * 29.99781 * 18 16 14 21 21 H 1.48500 * 109.46943 * 150.00255 * 18 16 14 22 22 C 1.47481 * 87.83479 * 27.00646 * 12 11 10 23 23 C 1.38730 * 119.88672 * 0.27622 * 8 7 6 24 24 C 1.38149 * 119.94393 * 359.46896 * 23 8 7 25 25 H 1.09003 * 109.47161 * 299.99926 * 1 2 3 26 26 H 1.09002 * 109.47118 * 59.99718 * 1 2 3 27 27 H 1.08996 * 109.47822 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47701 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47134 * 300.00272 * 3 2 1 30 30 H 1.09000 * 109.47324 * 59.99882 * 3 2 1 31 31 H 1.09002 * 109.47142 * 300.00604 * 4 2 1 32 32 H 1.09002 * 109.47375 * 59.99989 * 4 2 1 33 33 H 1.08990 * 109.47707 * 180.02562 * 4 2 1 34 34 H 1.08001 * 119.97152 * 359.97438 * 6 5 2 35 35 H 1.07999 * 120.02775 * 179.97438 * 7 6 5 36 36 H 1.08996 * 113.25289 * 23.79478 * 10 9 8 37 37 H 1.08999 * 113.47878 * 333.04390 * 11 10 9 38 38 H 1.09000 * 113.47592 * 202.58041 * 11 10 9 39 39 H 1.08993 * 109.47557 * 49.99841 * 13 12 11 40 40 H 1.08999 * 109.47097 * 289.99722 * 13 12 11 41 41 H 0.97002 * 120.00039 * 179.97438 * 17 16 14 42 42 H 1.09007 * 113.47525 * 87.75708 * 22 12 11 43 43 H 1.09001 * 113.47594 * 218.22648 * 22 12 11 44 44 H 1.08000 * 120.02876 * 179.72013 * 23 8 7 45 45 H 1.08001 * 119.97184 * 180.22746 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7105 1.2304 6 6 1.6975 -2.0342 1.4480 7 6 2.1563 -2.6875 2.5754 8 6 2.9540 -2.0145 3.4894 9 8 3.4070 -2.6552 4.5990 10 6 3.1297 -4.0535 4.6994 11 6 4.0917 -4.8206 5.6174 12 7 3.1982 -4.4880 6.7427 13 6 3.0354 -5.6372 7.6430 14 6 2.3255 -5.1961 8.8971 15 1 2.0257 -4.1651 9.0137 16 6 2.0587 -6.1088 9.8955 17 7 1.4397 -5.7238 10.9901 18 14 2.5766 -7.8922 9.6935 19 1 1.4804 -8.6554 9.0447 20 1 3.7954 -7.9609 8.8480 21 1 2.8655 -8.4778 11.0272 22 6 2.0917 -4.4174 5.7702 23 6 3.2842 -0.6849 3.2713 24 6 2.8272 -0.0375 2.1397 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6765 -1.7489 -1.2493 32 1 1.6767 -0.2074 -2.1393 33 1 3.1299 -0.7217 -1.2491 34 1 1.0761 -2.5576 0.7365 35 1 1.8942 -3.7214 2.7452 36 1 2.9601 -4.5290 3.7334 37 1 5.0771 -4.3613 5.6948 38 1 4.1393 -5.8880 5.4017 39 1 4.0154 -6.0376 7.9020 40 1 2.4478 -6.4084 7.1451 41 1 1.2516 -6.3659 11.6924 42 1 1.6055 -5.3772 5.5952 43 1 1.3822 -3.6162 5.9771 44 1 3.9013 -0.1574 3.9836 45 1 3.0871 0.9966 1.9677 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225256884.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:20 Heat of formation + Delta-G solvation = 2.145555 kcal Electronic energy + Delta-G solvation = -22486.249023 eV Core-core repulsion = 19276.330673 eV Total energy + Delta-G solvation = -3209.918349 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.76984 -40.58404 -38.73995 -36.27763 -34.94339 -32.22954 -31.70287 -29.84455 -28.25399 -28.03731 -27.46350 -26.90339 -24.10789 -23.63254 -22.83460 -20.99330 -19.96739 -19.14989 -18.99090 -17.20314 -17.04510 -16.51730 -16.37714 -16.04524 -15.63361 -15.35591 -15.07226 -14.90396 -14.70894 -14.55919 -14.34670 -14.14295 -13.68991 -13.49082 -13.41496 -13.09932 -13.00467 -12.73867 -12.57539 -12.48401 -12.41309 -12.05287 -11.82973 -11.76922 -11.61820 -11.57288 -11.51746 -11.29482 -11.23595 -10.82361 -9.91387 -9.61578 -8.96539 -8.31897 -6.37202 0.42859 0.49493 1.32051 1.35845 1.46609 2.11029 2.32013 2.80464 3.00121 3.24856 3.31516 3.71560 3.75725 3.84946 3.98707 4.16469 4.18582 4.26964 4.36337 4.40589 4.47044 4.48378 4.53011 4.62274 4.69131 4.70780 4.83191 4.84173 4.86382 4.91425 4.95839 5.04867 5.09291 5.10617 5.14907 5.26829 5.38949 5.44778 5.46226 5.50240 5.55469 5.68346 5.76647 5.90551 5.95529 6.51198 6.56964 6.68886 7.26203 8.85796 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.037063 B = 0.002689 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.280397 B =10411.329680 C =10439.926118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.024 4.024 3 C -0.145 4.145 4 C -0.137 4.137 5 C -0.113 4.113 6 C -0.077 4.077 7 C -0.213 4.213 8 C 0.103 3.897 9 O -0.305 6.305 10 C 0.067 3.933 11 C -0.001 4.001 12 N -0.489 5.489 13 C 0.137 3.863 14 C -0.523 4.523 15 H 0.023 0.977 16 C 0.002 3.998 17 N -0.951 5.951 18 Si 0.957 3.043 19 H -0.261 1.261 20 H -0.245 1.245 21 H -0.281 1.281 22 C -0.012 4.012 23 C -0.168 4.168 24 C -0.084 4.084 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.125 0.875 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.031 0.969 40 H 0.012 0.988 41 H 0.268 0.732 42 H 0.093 0.907 43 H 0.062 0.938 44 H 0.126 0.874 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.662 7.908 -29.220 30.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.024 4.024 3 C -0.202 4.202 4 C -0.194 4.194 5 C -0.113 4.113 6 C -0.095 4.095 7 C -0.231 4.231 8 C 0.058 3.942 9 O -0.218 6.218 10 C 0.010 3.990 11 C -0.129 4.129 12 N -0.212 5.212 13 C 0.009 3.991 14 C -0.561 4.561 15 H 0.042 0.958 16 C -0.195 4.195 17 N -0.592 5.592 18 Si 0.779 3.221 19 H -0.186 1.186 20 H -0.168 1.168 21 H -0.207 1.207 22 C -0.142 4.142 23 C -0.187 4.187 24 C -0.101 4.101 25 H 0.066 0.934 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.160 0.840 35 H 0.157 0.843 36 H 0.143 0.857 37 H 0.107 0.893 38 H 0.122 0.878 39 H 0.049 0.951 40 H 0.030 0.970 41 H 0.077 0.923 42 H 0.111 0.889 43 H 0.081 0.919 44 H 0.144 0.856 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.860 8.477 -28.404 29.701 hybrid contribution -0.317 -1.401 0.671 1.585 sum 1.543 7.077 -27.734 28.664 Atomic orbital electron populations 1.21900 0.93464 1.02178 1.02044 1.19469 0.95799 0.95291 0.91868 1.21975 1.01310 0.94521 1.02431 1.21883 1.00950 1.00333 0.96208 1.20003 0.99560 0.94326 0.97450 1.20996 0.98111 0.94298 0.96098 1.21437 1.02915 1.01755 0.96994 1.19426 0.95035 0.93147 0.86554 1.86148 1.73709 1.22668 1.39291 1.23491 0.96667 0.80061 0.98733 1.24159 0.98839 0.99891 0.90048 1.68935 1.06353 1.36792 1.09071 1.20538 0.96154 0.89637 0.92782 1.21224 1.37134 0.95899 1.01872 0.95837 1.26023 0.94567 1.04563 0.94310 1.70077 1.43315 1.37143 1.08635 0.85569 0.80150 0.78055 0.78279 1.18606 1.16825 1.20673 1.24351 0.95742 1.01855 0.92204 1.20649 1.05200 0.92459 1.00387 1.21206 0.96171 1.00594 0.92158 0.93379 0.91103 0.92434 0.92117 0.91224 0.92492 0.92384 0.91186 0.92960 0.84041 0.84264 0.85732 0.89280 0.87767 0.95100 0.96990 0.92311 0.88944 0.91908 0.85638 0.83319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.29 71.98 0.60 -1.14 16 2 C -0.02 -0.32 0.85 -52.93 -0.05 -0.37 16 3 C -0.15 -1.65 7.13 71.98 0.51 -1.14 16 4 C -0.14 -1.54 8.29 71.98 0.60 -0.95 16 5 C -0.11 -2.09 4.76 -19.85 -0.09 -2.19 16 6 C -0.08 -1.50 8.70 22.25 0.19 -1.30 16 7 C -0.21 -4.96 9.03 22.36 0.20 -4.76 16 8 C 0.10 2.93 6.68 22.51 0.15 3.08 16 9 O -0.30 -10.20 10.19 -92.43 -0.94 -11.15 16 10 C 0.07 1.99 4.06 30.94 0.13 2.11 16 11 C 0.00 -0.02 7.52 83.58 0.63 0.61 16 12 N -0.49 -21.41 6.32 -932.89 -5.89 -27.30 16 13 C 0.14 6.64 3.64 85.56 0.31 6.96 16 14 C -0.52 -31.85 9.94 25.60 0.25 -31.59 16 15 H 0.02 1.63 8.06 -2.91 -0.02 1.61 16 16 C 0.00 0.13 5.47 84.66 0.46 0.60 16 17 N -0.95 -61.32 13.96 21.45 0.30 -61.02 16 18 Si 0.96 44.04 27.47 68.60 1.88 45.93 16 19 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 20 H -0.24 -10.29 6.54 99.48 0.65 -9.64 16 21 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 22 C -0.01 -0.45 7.56 83.58 0.63 0.19 16 23 C -0.17 -4.33 9.99 22.37 0.22 -4.11 16 24 C -0.08 -1.71 8.97 22.26 0.20 -1.51 16 25 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.06 0.71 7.38 -2.39 -0.02 0.69 16 28 H 0.06 0.67 7.51 -2.39 -0.02 0.66 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.68 7.51 -2.39 -0.02 0.66 16 31 H 0.06 0.64 7.38 -2.39 -0.02 0.62 16 32 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.14 2.08 7.09 -2.91 -0.02 2.06 16 35 H 0.14 2.83 5.89 -2.91 -0.02 2.82 16 36 H 0.13 2.72 5.90 -2.39 -0.01 2.71 16 37 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 38 H 0.10 2.78 7.91 -2.39 -0.02 2.76 16 39 H 0.03 1.48 7.14 -2.39 -0.02 1.46 16 40 H 0.01 0.56 6.73 -2.39 -0.02 0.54 16 41 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 42 H 0.09 3.03 7.42 -2.38 -0.02 3.01 16 43 H 0.06 2.53 8.14 -2.39 -0.02 2.52 16 44 H 0.13 3.18 8.06 -2.91 -0.02 3.16 16 45 H 0.15 2.35 5.88 -2.91 -0.02 2.33 16 Total: -1.00 -73.78 354.73 1.20 -72.57 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.90 Total: 16.49 kcal Atomic # 6 Polarization: -40.47 SS G_CDS: 4.95 Total: -35.52 kcal Atomic # 7 Polarization: -82.73 SS G_CDS: -5.59 Total: -88.33 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: -0.94 Total: -11.15 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.88 Total: 45.93 kcal Total: -73.78 1.20 -72.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225256884.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.721 kcal (2) G-P(sol) polarization free energy of solvation -73.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds