Wall clock time and date at job start Tue Mar 31 2020 06:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46895 * 2 1 4 4 C 1.53000 * 109.46948 * 120.00059 * 2 1 3 5 5 C 1.50698 * 109.47291 * 239.99869 * 2 1 3 6 6 C 1.38271 * 119.94488 * 239.72561 * 5 2 1 7 7 C 1.38144 * 120.05281 * 179.72424 * 6 5 2 8 8 C 1.38733 * 119.94438 * 0.57466 * 7 6 5 9 9 O 1.35899 * 120.05469 * 179.67962 * 8 7 6 10 10 C 1.42898 * 116.99941 * 185.35902 * 9 8 7 11 11 H 1.08998 * 110.64227 * 38.16357 * 10 9 8 12 12 C 1.55159 * 110.71785 * 161.49846 * 10 9 8 13 13 C 1.54907 * 101.58107 * 153.86495 * 12 10 9 14 14 N 1.47423 * 104.83260 * 322.99245 * 13 12 10 15 15 C 1.36940 * 125.64534 * 204.09661 * 14 13 12 16 16 H 1.08002 * 119.99616 * 180.02562 * 15 14 13 17 17 C 1.38810 * 120.00141 * 0.03375 * 15 14 13 18 18 N 1.31616 * 120.00133 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00113 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47241 * 59.99766 * 19 17 15 21 21 H 1.48498 * 109.47437 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46986 * 300.00254 * 19 17 15 23 23 C 1.47022 * 108.70298 * 24.12474 * 14 13 12 24 24 C 1.38732 * 119.89027 * 359.70177 * 8 7 6 25 25 C 1.38149 * 119.94328 * 359.97438 * 24 8 7 26 26 H 1.09000 * 109.46745 * 60.00393 * 1 2 3 27 27 H 1.08999 * 109.46803 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47349 * 300.00207 * 1 2 3 29 29 H 1.09002 * 109.47103 * 60.00003 * 3 2 1 30 30 H 1.09010 * 109.47104 * 179.97438 * 3 2 1 31 31 H 1.08991 * 109.47218 * 299.99697 * 3 2 1 32 32 H 1.08999 * 109.47383 * 60.00338 * 4 2 1 33 33 H 1.09000 * 109.47028 * 180.02562 * 4 2 1 34 34 H 1.09002 * 109.47173 * 300.00072 * 4 2 1 35 35 H 1.07998 * 119.96820 * 359.97438 * 6 5 2 36 36 H 1.08003 * 120.02644 * 180.29473 * 7 6 5 37 37 H 1.09001 * 111.00155 * 271.93818 * 12 10 9 38 38 H 1.08996 * 111.00883 * 35.79026 * 12 10 9 39 39 H 1.08999 * 110.36623 * 204.14688 * 13 12 10 40 40 H 1.09001 * 110.36470 * 81.82809 * 13 12 10 41 41 H 0.97004 * 119.99927 * 180.02562 * 18 17 15 42 42 H 1.09001 * 109.87960 * 239.52215 * 23 14 13 43 43 H 1.09001 * 109.87988 * 118.36577 * 23 14 13 44 44 H 1.07993 * 120.02817 * 180.02562 * 24 8 7 45 45 H 1.07994 * 119.97416 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 2.0324 -0.7104 -1.2304 6 6 2.8319 -1.8312 -1.1022 7 6 3.2890 -2.4875 -2.2286 8 6 2.9550 -2.0142 -3.4892 9 8 3.4088 -2.6543 -4.5988 10 6 3.1249 -2.0461 -5.8603 11 1 3.2069 -0.9614 -5.7910 12 6 4.0655 -2.6022 -6.9618 13 6 3.2102 -2.3923 -8.2362 14 7 1.8264 -2.6730 -7.8124 15 6 0.8049 -3.0688 -8.6341 16 1 -0.1781 -3.2498 -8.2248 17 6 1.0328 -3.2376 -9.9929 18 7 2.2308 -3.0177 -10.4916 19 14 -0.3608 -3.7769 -11.1138 20 1 -1.4579 -2.7777 -11.0555 21 1 0.1385 -3.8836 -12.5083 22 1 -0.8709 -5.0986 -10.6687 23 6 1.7245 -2.4570 -6.3618 24 6 2.1573 -0.8862 -3.6152 25 6 1.6972 -0.2373 -2.4857 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 -1.7489 1.2492 33 1 3.1300 -0.7209 1.2495 34 1 1.6766 -0.2074 2.1392 35 1 3.0959 -2.1961 -0.1206 36 1 3.9096 -3.3657 -2.1279 37 1 4.9902 -2.0274 -7.0128 38 1 4.2733 -3.6600 -6.8007 39 1 3.5163 -3.0880 -9.0174 40 1 3.2983 -1.3640 -8.5870 41 1 2.3900 -3.1353 -11.4412 42 1 1.4105 -3.3782 -5.8710 43 1 1.0085 -1.6616 -6.1548 44 1 1.8956 -0.5161 -4.5954 45 1 1.0766 0.6411 -2.5831 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225257911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:35 Heat of formation + Delta-G solvation = 1.881567 kcal Electronic energy + Delta-G solvation = -22965.386714 eV Core-core repulsion = 19755.456917 eV Total energy + Delta-G solvation = -3209.929797 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.28493 -38.74027 -36.65380 -35.23698 -32.31731 -31.12078 -29.54917 -28.70245 -27.67311 -27.40576 -27.18280 -24.59372 -22.65872 -22.49477 -20.27665 -20.17400 -19.16813 -18.00632 -17.02404 -15.96814 -15.58164 -15.13348 -14.78674 -14.53435 -14.37803 -14.08022 -13.75508 -13.72881 -13.37555 -12.94961 -12.66858 -12.57729 -12.43844 -12.14075 -11.94442 -11.85910 -11.74461 -11.52721 -11.24256 -11.06177 -11.01580 -10.80210 -10.78201 -10.56436 -10.35633 -10.21561 -10.02879 -9.82551 -9.62140 -8.88285 -8.69386 -7.86151 -6.90004 -5.69662 -3.12040 1.45708 1.55330 3.39365 3.43055 3.44459 3.54360 3.85523 4.46437 4.50669 4.61245 4.84012 4.97707 5.06125 5.16074 5.23363 5.31680 5.37322 5.43376 5.44048 5.44341 5.56767 5.57712 5.62280 5.65836 5.69942 5.72291 5.80819 5.82638 5.89084 6.08952 6.11546 6.14044 6.25561 6.39952 6.43874 6.48107 6.50984 6.63283 6.64600 6.70614 6.97671 7.41688 7.57393 7.74122 7.82517 8.29939 9.16888 9.77175 10.40574 11.34660 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028252 B = 0.003169 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.854594 B = 8832.723040 C = 9349.532084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.023 4.023 3 C -0.138 4.138 4 C -0.143 4.143 5 C -0.120 4.120 6 C -0.084 4.084 7 C -0.158 4.158 8 C 0.137 3.863 9 O -0.306 6.306 10 C 0.070 3.930 11 H 0.075 0.925 12 C -0.135 4.135 13 C 0.153 3.847 14 N -0.601 5.601 15 C -0.225 4.225 16 H 0.078 0.922 17 C -0.010 4.010 18 N -0.924 5.924 19 Si 0.917 3.083 20 H -0.285 1.285 21 H -0.289 1.289 22 H -0.284 1.284 23 C 0.118 3.882 24 C -0.204 4.204 25 C -0.074 4.074 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.114 0.886 40 H 0.016 0.984 41 H 0.254 0.746 42 H 0.035 0.965 43 H 0.025 0.975 44 H 0.131 0.869 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.796 6.420 20.919 21.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.023 4.023 3 C -0.195 4.195 4 C -0.200 4.200 5 C -0.120 4.120 6 C -0.102 4.102 7 C -0.176 4.176 8 C 0.091 3.909 9 O -0.219 6.219 10 C 0.014 3.986 11 H 0.093 0.907 12 C -0.173 4.173 13 C 0.028 3.972 14 N -0.328 5.328 15 C -0.353 4.353 16 H 0.096 0.904 17 C -0.205 4.205 18 N -0.572 5.572 19 Si 0.747 3.253 20 H -0.211 1.211 21 H -0.215 1.215 22 H -0.211 1.211 23 C -0.008 4.008 24 C -0.223 4.223 25 C -0.092 4.092 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.132 0.868 40 H 0.034 0.966 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.043 0.957 44 H 0.149 0.851 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.866 6.192 20.659 21.648 hybrid contribution -0.880 -0.018 -0.719 1.136 sum 0.986 6.175 19.941 20.898 Atomic orbital electron populations 1.21897 0.93986 1.02060 1.01661 1.19388 0.95464 0.94953 0.92543 1.21895 1.01199 0.94789 1.01657 1.21955 1.01128 1.00405 0.96556 1.19608 1.01011 0.97410 0.94006 1.20902 0.96717 0.94770 0.97842 1.20423 1.04947 1.02606 0.89654 1.19131 0.92961 0.91366 0.87431 1.86153 1.73254 1.49320 1.13133 1.23646 0.97812 0.96678 0.80447 0.90675 1.23187 0.97516 1.01333 0.95294 1.22001 0.82242 1.00072 0.92894 1.44376 1.07801 1.79768 1.00886 1.19045 0.89542 1.38074 0.88606 0.90425 1.24797 0.97227 1.01850 0.96664 1.69746 1.19660 1.55424 1.12371 0.86111 0.80863 0.78537 0.79743 1.21148 1.21483 1.21070 1.21738 0.93338 0.98200 0.87544 1.21414 1.02776 0.98073 1.00035 1.20725 0.98277 0.98874 0.91371 0.92450 0.92474 0.92641 0.92644 0.92554 0.92479 0.92270 0.92316 0.92612 0.85436 0.85539 0.91505 0.90792 0.86847 0.96573 0.93533 0.94745 0.95676 0.85092 0.86260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.29 37.16 0.31 -0.89 16 2 C -0.02 -0.21 0.85 -155.66 -0.13 -0.34 16 3 C -0.14 -1.14 8.29 37.16 0.31 -0.83 16 4 C -0.14 -1.10 7.13 37.16 0.26 -0.84 16 5 C -0.12 -1.38 4.76 -104.60 -0.50 -1.88 16 6 C -0.08 -0.99 8.97 -39.60 -0.36 -1.35 16 7 C -0.16 -2.17 9.99 -39.43 -0.39 -2.57 16 8 C 0.14 2.19 6.63 -39.22 -0.26 1.93 16 9 O -0.31 -5.55 9.88 -19.42 -0.19 -5.74 16 10 C 0.07 1.33 2.77 -24.90 -0.07 1.26 16 11 H 0.08 1.32 6.58 -51.93 -0.34 0.98 16 12 C -0.13 -2.66 6.81 -24.58 -0.17 -2.82 16 13 C 0.15 3.72 5.89 -2.53 -0.01 3.71 16 14 N -0.60 -15.73 3.39 -170.08 -0.58 -16.31 16 15 C -0.22 -6.35 10.27 -15.06 -0.15 -6.50 16 16 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 17 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 18 N -0.92 -26.84 10.09 55.49 0.56 -26.28 16 19 Si 0.92 22.11 29.55 -169.99 -5.02 17.09 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C 0.12 2.60 6.51 -3.07 -0.02 2.58 16 24 C -0.20 -3.05 8.77 -39.43 -0.35 -3.40 16 25 C -0.07 -0.95 8.70 -39.60 -0.34 -1.29 16 26 H 0.06 0.50 7.38 -51.93 -0.38 0.12 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.06 0.48 7.38 -51.93 -0.38 0.10 16 32 H 0.06 0.45 7.52 -51.93 -0.39 0.06 16 33 H 0.06 0.44 7.50 -51.93 -0.39 0.05 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.13 1.20 5.89 -52.49 -0.31 0.89 16 36 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.11 3.08 5.87 -51.93 -0.30 2.78 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.03 0.79 8.06 -51.93 -0.42 0.37 16 43 H 0.03 0.54 7.42 -51.93 -0.39 0.16 16 44 H 0.13 2.01 5.31 -52.49 -0.28 1.73 16 45 H 0.12 1.31 7.09 -52.49 -0.37 0.94 16 LS Contribution 349.70 15.07 5.27 5.27 Total: -1.00 -29.98 349.70 -9.24 -39.23 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -7.31 Total: 0.35 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -1.97 Total: -13.60 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: -0.02 Total: -42.59 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.19 Total: -5.74 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.98 -9.24 -39.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225257911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.108 kcal (2) G-P(sol) polarization free energy of solvation -29.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds