Wall clock time and date at job start Tue Mar 31 2020 06:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46895 * 2 1 4 4 C 1.53000 * 109.46948 * 120.00059 * 2 1 3 5 5 C 1.50698 * 109.47291 * 239.99869 * 2 1 3 6 6 C 1.38271 * 119.94488 * 239.72561 * 5 2 1 7 7 C 1.38144 * 120.05281 * 179.72424 * 6 5 2 8 8 C 1.38733 * 119.94438 * 0.57466 * 7 6 5 9 9 O 1.35899 * 120.05469 * 179.67962 * 8 7 6 10 10 C 1.42898 * 116.99941 * 185.35902 * 9 8 7 11 11 H 1.08998 * 110.64227 * 38.16357 * 10 9 8 12 12 C 1.55159 * 110.71785 * 161.49846 * 10 9 8 13 13 C 1.54907 * 101.58107 * 153.86495 * 12 10 9 14 14 N 1.47423 * 104.83260 * 322.99245 * 13 12 10 15 15 C 1.36940 * 125.64534 * 204.09661 * 14 13 12 16 16 H 1.08002 * 119.99616 * 180.02562 * 15 14 13 17 17 C 1.38810 * 120.00141 * 0.03375 * 15 14 13 18 18 N 1.31616 * 120.00133 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00113 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47241 * 59.99766 * 19 17 15 21 21 H 1.48498 * 109.47437 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46986 * 300.00254 * 19 17 15 23 23 C 1.47022 * 108.70298 * 24.12474 * 14 13 12 24 24 C 1.38732 * 119.89027 * 359.70177 * 8 7 6 25 25 C 1.38149 * 119.94328 * 359.97438 * 24 8 7 26 26 H 1.09000 * 109.46745 * 60.00393 * 1 2 3 27 27 H 1.08999 * 109.46803 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47349 * 300.00207 * 1 2 3 29 29 H 1.09002 * 109.47103 * 60.00003 * 3 2 1 30 30 H 1.09010 * 109.47104 * 179.97438 * 3 2 1 31 31 H 1.08991 * 109.47218 * 299.99697 * 3 2 1 32 32 H 1.08999 * 109.47383 * 60.00338 * 4 2 1 33 33 H 1.09000 * 109.47028 * 180.02562 * 4 2 1 34 34 H 1.09002 * 109.47173 * 300.00072 * 4 2 1 35 35 H 1.07998 * 119.96820 * 359.97438 * 6 5 2 36 36 H 1.08003 * 120.02644 * 180.29473 * 7 6 5 37 37 H 1.09001 * 111.00155 * 271.93818 * 12 10 9 38 38 H 1.08996 * 111.00883 * 35.79026 * 12 10 9 39 39 H 1.08999 * 110.36623 * 204.14688 * 13 12 10 40 40 H 1.09001 * 110.36470 * 81.82809 * 13 12 10 41 41 H 0.97004 * 119.99927 * 180.02562 * 18 17 15 42 42 H 1.09001 * 109.87960 * 239.52215 * 23 14 13 43 43 H 1.09001 * 109.87988 * 118.36577 * 23 14 13 44 44 H 1.07993 * 120.02817 * 180.02562 * 24 8 7 45 45 H 1.07994 * 119.97416 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 2.0324 -0.7104 -1.2304 6 6 2.8319 -1.8312 -1.1022 7 6 3.2890 -2.4875 -2.2286 8 6 2.9550 -2.0142 -3.4892 9 8 3.4088 -2.6543 -4.5988 10 6 3.1249 -2.0461 -5.8603 11 1 3.2069 -0.9614 -5.7910 12 6 4.0655 -2.6022 -6.9618 13 6 3.2102 -2.3923 -8.2362 14 7 1.8264 -2.6730 -7.8124 15 6 0.8049 -3.0688 -8.6341 16 1 -0.1781 -3.2498 -8.2248 17 6 1.0328 -3.2376 -9.9929 18 7 2.2308 -3.0177 -10.4916 19 14 -0.3608 -3.7769 -11.1138 20 1 -1.4579 -2.7777 -11.0555 21 1 0.1385 -3.8836 -12.5083 22 1 -0.8709 -5.0986 -10.6687 23 6 1.7245 -2.4570 -6.3618 24 6 2.1573 -0.8862 -3.6152 25 6 1.6972 -0.2373 -2.4857 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 -1.7489 1.2492 33 1 3.1300 -0.7209 1.2495 34 1 1.6766 -0.2074 2.1392 35 1 3.0959 -2.1961 -0.1206 36 1 3.9096 -3.3657 -2.1279 37 1 4.9902 -2.0274 -7.0128 38 1 4.2733 -3.6600 -6.8007 39 1 3.5163 -3.0880 -9.0174 40 1 3.2983 -1.3640 -8.5870 41 1 2.3900 -3.1353 -11.4412 42 1 1.4105 -3.3782 -5.8710 43 1 1.0085 -1.6616 -6.1548 44 1 1.8956 -0.5161 -4.5954 45 1 1.0766 0.6411 -2.5831 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225257911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:34 Heat of formation + Delta-G solvation = -12.939245 kcal Electronic energy + Delta-G solvation = -22966.029392 eV Core-core repulsion = 19755.456917 eV Total energy + Delta-G solvation = -3210.572475 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.44302 -39.93273 -38.19190 -36.33216 -34.29209 -32.15924 -31.32987 -29.92544 -29.07798 -28.14299 -28.04884 -26.54936 -23.79993 -23.58900 -22.15849 -21.61529 -20.05300 -19.28223 -19.01941 -17.22785 -16.70399 -16.67891 -16.48082 -15.65149 -15.50066 -15.37233 -15.00363 -14.77841 -14.43156 -14.31253 -14.14904 -13.73916 -13.59516 -13.47723 -13.21409 -13.00509 -12.76050 -12.73227 -12.61576 -12.48598 -12.39359 -12.10207 -12.08900 -11.89551 -11.79174 -11.57281 -11.51293 -11.40346 -11.26406 -10.79526 -9.91884 -9.01562 -8.95313 -7.83027 -5.29101 0.42099 0.49233 1.45384 1.48935 1.55481 2.18034 2.47772 2.81612 3.27681 3.57912 3.63620 3.73916 3.83379 3.90621 3.94012 4.05397 4.15706 4.18526 4.40322 4.45118 4.49756 4.55646 4.59668 4.73445 4.82972 4.83267 4.86914 4.92594 4.95675 4.97792 5.04706 5.09028 5.09837 5.15304 5.26473 5.38242 5.40500 5.47176 5.49279 5.52637 5.55272 5.71167 5.76003 5.91457 6.23209 6.50464 7.03990 7.68777 8.32017 9.19130 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028252 B = 0.003169 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.854594 B = 8832.723040 C = 9349.532084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.024 4.024 3 C -0.138 4.138 4 C -0.144 4.144 5 C -0.112 4.112 6 C -0.081 4.081 7 C -0.162 4.162 8 C 0.103 3.897 9 O -0.317 6.317 10 C 0.089 3.911 11 H 0.090 0.910 12 C -0.122 4.122 13 C 0.155 3.845 14 N -0.623 5.623 15 C -0.248 4.248 16 H 0.079 0.921 17 C -0.062 4.062 18 N -0.947 5.947 19 Si 0.985 3.015 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.277 1.277 23 C 0.119 3.881 24 C -0.216 4.216 25 C -0.079 4.079 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.156 0.844 36 H 0.136 0.864 37 H 0.098 0.902 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.001 0.999 41 H 0.251 0.749 42 H 0.022 0.978 43 H 0.030 0.970 44 H 0.121 0.879 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.426 7.075 23.341 24.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.024 4.024 3 C -0.195 4.195 4 C -0.201 4.201 5 C -0.112 4.112 6 C -0.099 4.099 7 C -0.181 4.181 8 C 0.059 3.941 9 O -0.231 6.231 10 C 0.032 3.968 11 H 0.108 0.892 12 C -0.160 4.160 13 C 0.031 3.969 14 N -0.351 5.351 15 C -0.377 4.377 16 H 0.096 0.904 17 C -0.255 4.255 18 N -0.596 5.596 19 Si 0.812 3.188 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.203 1.203 23 C -0.007 4.007 24 C -0.235 4.235 25 C -0.097 4.097 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.173 0.827 36 H 0.154 0.846 37 H 0.116 0.884 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.019 0.981 41 H 0.061 0.939 42 H 0.040 0.960 43 H 0.048 0.952 44 H 0.138 0.862 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.496 6.854 23.120 24.161 hybrid contribution -0.799 -0.179 -1.325 1.558 sum 0.696 6.675 21.795 22.805 Atomic orbital electron populations 1.21903 0.93594 1.01822 1.02307 1.19473 0.95733 0.95323 0.91871 1.21892 1.01021 0.94246 1.02316 1.21966 1.01403 1.00439 0.96263 1.20003 0.99631 0.96944 0.94659 1.21247 0.95893 0.94360 0.98393 1.20675 1.04984 1.03039 0.89353 1.19420 0.94841 0.92526 0.87353 1.86103 1.73870 1.49927 1.13164 1.23309 0.95198 0.97312 0.80982 0.89216 1.23001 0.98034 1.01769 0.93187 1.21785 0.82557 0.98155 0.94449 1.44667 1.08114 1.79806 1.02469 1.19403 0.90334 1.38440 0.89503 0.90353 1.25665 0.99736 1.02079 0.97988 1.69988 1.21320 1.56022 1.12289 0.85070 0.78031 0.78304 0.77407 1.20287 1.21489 1.20331 1.21810 0.95735 0.97669 0.85473 1.21423 1.03331 0.98326 1.00394 1.20942 0.98273 0.99244 0.91277 0.92952 0.93154 0.90941 0.91016 0.92839 0.92885 0.92192 0.91927 0.91171 0.82675 0.84641 0.88382 0.91198 0.89887 0.98117 0.93941 0.96008 0.95249 0.86153 0.84770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.29 71.98 0.60 -1.44 16 2 C -0.02 -0.36 0.85 -52.93 -0.05 -0.41 16 3 C -0.14 -1.89 8.29 71.98 0.60 -1.29 16 4 C -0.14 -1.71 7.13 71.98 0.51 -1.20 16 5 C -0.11 -2.34 4.76 -19.85 -0.09 -2.44 16 6 C -0.08 -1.72 8.97 22.26 0.20 -1.52 16 7 C -0.16 -4.25 9.99 22.37 0.22 -4.03 16 8 C 0.10 3.26 6.63 22.51 0.15 3.41 16 9 O -0.32 -11.45 9.88 -92.41 -0.91 -12.36 16 10 C 0.09 3.36 2.77 31.78 0.09 3.44 16 11 H 0.09 3.13 6.58 -2.39 -0.02 3.11 16 12 C -0.12 -4.79 6.81 31.99 0.22 -4.58 16 13 C 0.16 7.80 5.89 86.85 0.51 8.31 16 14 N -0.62 -33.52 3.39 -692.01 -2.35 -35.87 16 15 C -0.25 -14.35 10.27 84.03 0.86 -13.49 16 16 H 0.08 4.37 7.83 -2.91 -0.02 4.34 16 17 C -0.06 -3.55 5.49 84.86 0.47 -3.08 16 18 N -0.95 -56.47 10.09 21.65 0.22 -56.25 16 19 Si 0.98 45.94 29.55 68.60 2.03 47.97 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 23 C 0.12 5.34 6.51 86.73 0.56 5.90 16 24 C -0.22 -6.37 8.77 22.37 0.20 -6.17 16 25 C -0.08 -1.91 8.70 22.26 0.19 -1.72 16 26 H 0.05 0.81 7.38 -2.39 -0.02 0.79 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.05 0.77 7.38 -2.39 -0.02 0.75 16 32 H 0.06 0.72 7.52 -2.39 -0.02 0.70 16 33 H 0.06 0.71 7.50 -2.39 -0.02 0.69 16 34 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.16 2.39 5.89 -2.91 -0.02 2.37 16 36 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16 37 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 38 H 0.07 2.80 8.14 -2.39 -0.02 2.79 16 39 H 0.08 4.70 5.87 -2.39 -0.01 4.68 16 40 H 0.00 0.04 8.14 -2.39 -0.02 0.03 16 41 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 42 H 0.02 1.03 8.06 -2.39 -0.02 1.01 16 43 H 0.03 1.29 7.42 -2.39 -0.02 1.27 16 44 H 0.12 3.72 5.31 -2.91 -0.02 3.71 16 45 H 0.13 2.75 7.09 -2.91 -0.02 2.73 16 Total: -1.00 -65.48 349.70 5.18 -60.30 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.96 Total: 16.50 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: 5.24 Total: -20.28 kcal Atomic # 7 Polarization: -89.99 SS G_CDS: -2.13 Total: -92.12 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: -0.91 Total: -12.36 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -65.48 5.18 -60.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225257911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.358 kcal (2) G-P(sol) polarization free energy of solvation -65.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds