Wall clock time and date at job start Tue Mar 31 2020 06:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46894 * 2 1 4 4 C 1.52997 * 109.47261 * 240.00039 * 2 1 3 5 5 C 1.50695 * 109.47250 * 119.99714 * 2 1 3 6 6 C 1.38269 * 119.94370 * 60.00418 * 5 2 1 7 7 C 1.38148 * 120.05554 * 179.97438 * 6 5 2 8 8 C 1.38728 * 119.94355 * 359.97438 * 7 6 5 9 9 O 1.35905 * 120.05655 * 180.02562 * 8 7 6 10 10 C 1.42896 * 116.99728 * 354.59161 * 9 8 7 11 11 H 1.08997 * 110.64481 * 322.85930 * 10 9 8 12 12 C 1.55153 * 110.72079 * 199.52004 * 10 9 8 13 13 C 1.55131 * 101.48857 * 205.96909 * 12 10 9 14 14 N 1.47420 * 104.72002 * 37.29794 * 13 12 10 15 15 C 1.36935 * 125.64602 * 155.82111 * 14 13 12 16 16 H 1.08000 * 120.00123 * 196.84352 * 15 14 13 17 17 C 1.38811 * 120.00378 * 16.84303 * 15 14 13 18 18 N 1.31625 * 119.99745 * 25.76554 * 17 15 14 19 19 Si 1.86799 * 120.00188 * 205.76777 * 17 15 14 20 20 H 1.48505 * 109.47256 * 179.97438 * 19 17 15 21 21 H 1.48499 * 109.47030 * 60.00030 * 19 17 15 22 22 H 1.48494 * 109.47081 * 300.00049 * 19 17 15 23 23 C 1.47022 * 108.70504 * 335.54913 * 14 13 12 24 24 C 1.38732 * 119.89200 * 0.27352 * 8 7 6 25 25 C 1.38150 * 119.93904 * 359.43226 * 24 8 7 26 26 H 1.09007 * 109.47214 * 299.99659 * 1 2 3 27 27 H 1.08996 * 109.47438 * 59.99857 * 1 2 3 28 28 H 1.09003 * 109.47315 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47123 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.46944 * 300.00316 * 3 2 1 31 31 H 1.09000 * 109.47425 * 59.99732 * 3 2 1 32 32 H 1.09003 * 109.46616 * 300.00011 * 4 2 1 33 33 H 1.09005 * 109.46915 * 59.99476 * 4 2 1 34 34 H 1.08995 * 109.47001 * 179.97438 * 4 2 1 35 35 H 1.07994 * 119.97328 * 359.96896 * 6 5 2 36 36 H 1.08001 * 120.02838 * 180.02562 * 7 6 5 37 37 H 1.09002 * 111.00504 * 324.20851 * 12 10 9 38 38 H 1.09007 * 111.00543 * 88.01915 * 12 10 9 39 39 H 1.08998 * 110.49557 * 278.45126 * 13 12 10 40 40 H 1.08998 * 110.34359 * 156.06279 * 13 12 10 41 41 H 0.96998 * 119.99965 * 6.28190 * 18 17 15 42 42 H 1.09000 * 109.87853 * 120.70519 * 23 14 13 43 43 H 1.08998 * 109.88357 * 241.87261 * 23 14 13 44 44 H 1.08003 * 120.03173 * 179.71734 * 24 8 7 45 45 H 1.08001 * 119.97038 * 180.27631 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7103 1.2304 6 6 1.6977 -2.0341 1.4481 7 6 2.1574 -2.6877 2.5751 8 6 2.9558 -2.0148 3.4885 9 8 3.4097 -2.6557 4.5976 10 6 2.9306 -3.9832 4.8215 11 1 1.8851 -4.0694 4.5256 12 6 3.1205 -4.3923 6.3060 13 6 3.2082 -5.9369 6.1921 14 7 3.9578 -6.1786 4.9459 15 6 4.6783 -7.3059 4.6539 16 1 5.4051 -7.2904 3.8552 17 6 4.4744 -8.4686 5.3843 18 7 3.3170 -8.6809 5.9739 19 14 5.8428 -9.7318 5.5304 20 1 5.3760 -10.8738 6.3571 21 1 7.0266 -9.1070 6.1734 22 1 6.2137 -10.2185 4.1774 23 6 3.7983 -5.0117 4.0659 24 6 3.2860 -0.6851 3.2704 25 6 2.8288 -0.0378 2.1388 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6766 -1.7489 -1.2491 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2494 35 1 1.0764 -2.5576 0.7366 36 1 1.8961 -3.7218 2.7445 37 1 4.0417 -3.9742 6.7118 38 1 2.2610 -4.0941 6.9065 39 1 2.2110 -6.3719 6.1255 40 1 3.7469 -6.3498 7.0450 41 1 2.5774 -8.0715 5.8242 42 1 4.7739 -4.5803 3.8420 43 1 3.3012 -5.3089 3.1425 44 1 3.9037 -0.1578 3.9823 45 1 3.0892 0.9960 1.9663 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225257913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:38 Heat of formation + Delta-G solvation = -2.582934 kcal Electronic energy + Delta-G solvation = -22997.032160 eV Core-core repulsion = 19786.908768 eV Total energy + Delta-G solvation = -3210.123392 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.35694 -38.84061 -36.86926 -35.34341 -32.49630 -31.17316 -29.50654 -28.79165 -27.73209 -27.43038 -27.28793 -24.41959 -22.73762 -22.59064 -20.37472 -20.28650 -19.21547 -18.11820 -17.61107 -16.07615 -15.67951 -15.30026 -14.68355 -14.47056 -14.37213 -13.99309 -13.85302 -13.68162 -13.42452 -13.17354 -13.00180 -12.70091 -12.53309 -12.36781 -12.10763 -11.95849 -11.86887 -11.53639 -11.30281 -11.10826 -10.90294 -10.81085 -10.71069 -10.57556 -10.51501 -10.22355 -10.09013 -9.99708 -9.51639 -8.93464 -8.48494 -7.92487 -6.99862 -6.11448 -3.19598 1.40527 1.49681 3.41611 3.49304 3.54024 3.71289 3.80134 4.47207 4.56538 4.58038 4.81165 4.91038 4.98887 5.08753 5.12152 5.14800 5.33899 5.34398 5.35848 5.41664 5.43765 5.48529 5.55133 5.58100 5.67565 5.68488 5.73546 5.77552 5.86232 5.98717 6.05436 6.06418 6.11434 6.13391 6.26388 6.37764 6.44621 6.53044 6.56588 6.65888 6.87272 6.91731 6.95045 7.68086 7.75241 8.44393 8.97601 9.77210 10.29885 11.20526 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028743 B = 0.003155 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.925037 B = 8873.265280 C = 9256.541683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.024 4.024 3 C -0.143 4.143 4 C -0.139 4.139 5 C -0.118 4.118 6 C -0.074 4.074 7 C -0.204 4.204 8 C 0.136 3.864 9 O -0.305 6.305 10 C 0.071 3.929 11 H 0.077 0.923 12 C -0.127 4.127 13 C 0.145 3.855 14 N -0.600 5.600 15 C -0.335 4.335 16 H 0.066 0.934 17 C -0.025 4.025 18 N -0.920 5.920 19 Si 1.067 2.933 20 H -0.284 1.284 21 H -0.293 1.293 22 H -0.293 1.293 23 C 0.118 3.882 24 C -0.157 4.157 25 C -0.084 4.084 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.120 0.880 36 H 0.131 0.869 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.031 0.969 40 H 0.060 0.940 41 H 0.268 0.732 42 H 0.037 0.963 43 H 0.027 0.973 44 H 0.127 0.873 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.116 19.320 -9.781 22.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.024 4.024 3 C -0.201 4.201 4 C -0.196 4.196 5 C -0.119 4.119 6 C -0.092 4.092 7 C -0.222 4.222 8 C 0.090 3.910 9 O -0.218 6.218 10 C 0.015 3.985 11 H 0.095 0.905 12 C -0.165 4.165 13 C 0.019 3.981 14 N -0.329 5.329 15 C -0.463 4.463 16 H 0.084 0.916 17 C -0.227 4.227 18 N -0.561 5.561 19 Si 0.897 3.103 20 H -0.210 1.210 21 H -0.220 1.220 22 H -0.220 1.220 23 C -0.008 4.008 24 C -0.175 4.175 25 C -0.102 4.102 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.138 0.862 36 H 0.148 0.852 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.049 0.951 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.055 0.945 43 H 0.045 0.955 44 H 0.145 0.855 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.485 17.853 -8.942 20.465 hybrid contribution -0.567 1.203 -0.938 1.627 sum -5.052 19.056 -9.880 22.052 Atomic orbital electron populations 1.21895 0.94006 1.02027 1.01619 1.19395 0.95431 0.94808 0.92739 1.21959 1.01203 0.95147 1.01743 1.21901 1.01326 1.00263 0.96138 1.19623 1.00919 0.94338 0.96982 1.20733 0.98363 0.93863 0.96251 1.21402 1.03025 1.01245 0.96568 1.19109 0.93173 0.91945 0.86787 1.86130 1.66376 1.29245 1.40089 1.23580 0.97544 0.79278 0.98109 0.90467 1.22994 1.02247 0.98405 0.92874 1.21631 0.95997 0.89627 0.90824 1.44443 1.59813 1.15960 1.12664 1.19777 1.16173 0.88857 1.21496 0.91640 1.25810 1.01146 0.97121 0.98594 1.70799 1.00891 1.37792 1.46658 0.83490 0.74877 0.75809 0.76150 1.20983 1.22016 1.21959 1.21779 0.97064 0.88587 0.93353 1.20423 1.04978 0.92304 0.99814 1.20912 0.96679 0.99668 0.92957 0.92553 0.92591 0.92476 0.92266 0.92569 0.92309 0.92438 0.92597 0.92468 0.86195 0.85157 0.90337 0.91023 0.95143 0.92194 0.91990 0.94534 0.95515 0.85507 0.85360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.29 37.16 0.31 -0.83 16 2 C -0.02 -0.21 0.85 -155.66 -0.13 -0.35 16 3 C -0.14 -1.09 7.13 37.16 0.26 -0.82 16 4 C -0.14 -1.19 8.29 37.16 0.31 -0.89 16 5 C -0.12 -1.35 4.76 -104.60 -0.50 -1.85 16 6 C -0.07 -0.94 8.70 -39.60 -0.34 -1.28 16 7 C -0.20 -3.03 8.80 -39.43 -0.35 -3.38 16 8 C 0.14 2.14 6.63 -39.22 -0.26 1.88 16 9 O -0.31 -5.42 9.87 -19.44 -0.19 -5.61 16 10 C 0.07 1.32 2.76 -24.90 -0.07 1.25 16 11 H 0.08 1.33 6.52 -51.93 -0.34 1.00 16 12 C -0.13 -2.37 6.82 -24.46 -0.17 -2.54 16 13 C 0.14 3.39 5.26 -2.41 -0.01 3.38 16 14 N -0.60 -15.67 3.30 -169.94 -0.56 -16.23 16 15 C -0.34 -9.68 10.05 -15.06 -0.15 -9.83 16 16 H 0.07 1.89 7.95 -52.49 -0.42 1.47 16 17 C -0.03 -0.73 5.13 -17.43 -0.09 -0.82 16 18 N -0.92 -27.86 12.90 55.49 0.72 -27.15 16 19 Si 1.07 25.57 29.99 -169.99 -5.10 20.47 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 C 0.12 2.61 6.56 -3.06 -0.02 2.59 16 24 C -0.16 -2.12 9.99 -39.43 -0.39 -2.52 16 25 C -0.08 -0.98 8.97 -39.60 -0.36 -1.33 16 26 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.48 7.38 -51.93 -0.38 0.10 16 29 H 0.06 0.45 7.51 -51.93 -0.39 0.06 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.43 7.51 -51.93 -0.39 0.04 16 32 H 0.06 0.51 7.38 -51.93 -0.38 0.12 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.12 1.32 7.09 -52.49 -0.37 0.95 16 36 H 0.13 2.01 5.37 -52.49 -0.28 1.73 16 37 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.03 0.74 6.76 -51.93 -0.35 0.39 16 40 H 0.06 1.52 7.90 -51.93 -0.41 1.11 16 41 H 0.27 8.08 5.85 -40.82 -0.24 7.84 16 42 H 0.04 0.84 8.06 -51.93 -0.42 0.42 16 43 H 0.03 0.59 7.49 -51.93 -0.39 0.21 16 44 H 0.13 1.56 8.06 -52.48 -0.42 1.13 16 45 H 0.13 1.18 5.89 -52.49 -0.31 0.87 16 LS Contribution 350.08 15.07 5.28 5.28 Total: -1.00 -31.41 350.08 -9.07 -40.48 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -7.25 Total: 0.10 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: -1.96 Total: -17.34 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 0.16 Total: -43.38 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -0.19 Total: -5.61 kcal Atomic # 14 Polarization: 25.57 SS G_CDS: -5.10 Total: 20.47 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.41 -9.07 -40.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225257913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.900 kcal (2) G-P(sol) polarization free energy of solvation -31.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds