Wall clock time and date at job start Tue Mar 31 2020 06:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46894 * 2 1 4 4 C 1.52997 * 109.47261 * 240.00039 * 2 1 3 5 5 C 1.50695 * 109.47250 * 119.99714 * 2 1 3 6 6 C 1.38269 * 119.94370 * 60.00418 * 5 2 1 7 7 C 1.38148 * 120.05554 * 179.97438 * 6 5 2 8 8 C 1.38728 * 119.94355 * 359.97438 * 7 6 5 9 9 O 1.35905 * 120.05655 * 180.02562 * 8 7 6 10 10 C 1.42896 * 116.99728 * 354.59161 * 9 8 7 11 11 H 1.08997 * 110.64481 * 322.85930 * 10 9 8 12 12 C 1.55153 * 110.72079 * 199.52004 * 10 9 8 13 13 C 1.55131 * 101.48857 * 205.96909 * 12 10 9 14 14 N 1.47420 * 104.72002 * 37.29794 * 13 12 10 15 15 C 1.36935 * 125.64602 * 155.82111 * 14 13 12 16 16 H 1.08000 * 120.00123 * 196.84352 * 15 14 13 17 17 C 1.38811 * 120.00378 * 16.84303 * 15 14 13 18 18 N 1.31625 * 119.99745 * 25.76554 * 17 15 14 19 19 Si 1.86799 * 120.00188 * 205.76777 * 17 15 14 20 20 H 1.48505 * 109.47256 * 179.97438 * 19 17 15 21 21 H 1.48499 * 109.47030 * 60.00030 * 19 17 15 22 22 H 1.48494 * 109.47081 * 300.00049 * 19 17 15 23 23 C 1.47022 * 108.70504 * 335.54913 * 14 13 12 24 24 C 1.38732 * 119.89200 * 0.27352 * 8 7 6 25 25 C 1.38150 * 119.93904 * 359.43226 * 24 8 7 26 26 H 1.09007 * 109.47214 * 299.99659 * 1 2 3 27 27 H 1.08996 * 109.47438 * 59.99857 * 1 2 3 28 28 H 1.09003 * 109.47315 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47123 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.46944 * 300.00316 * 3 2 1 31 31 H 1.09000 * 109.47425 * 59.99732 * 3 2 1 32 32 H 1.09003 * 109.46616 * 300.00011 * 4 2 1 33 33 H 1.09005 * 109.46915 * 59.99476 * 4 2 1 34 34 H 1.08995 * 109.47001 * 179.97438 * 4 2 1 35 35 H 1.07994 * 119.97328 * 359.96896 * 6 5 2 36 36 H 1.08001 * 120.02838 * 180.02562 * 7 6 5 37 37 H 1.09002 * 111.00504 * 324.20851 * 12 10 9 38 38 H 1.09007 * 111.00543 * 88.01915 * 12 10 9 39 39 H 1.08998 * 110.49557 * 278.45126 * 13 12 10 40 40 H 1.08998 * 110.34359 * 156.06279 * 13 12 10 41 41 H 0.96998 * 119.99965 * 6.28190 * 18 17 15 42 42 H 1.09000 * 109.87853 * 120.70519 * 23 14 13 43 43 H 1.08998 * 109.88357 * 241.87261 * 23 14 13 44 44 H 1.08003 * 120.03173 * 179.71734 * 24 8 7 45 45 H 1.08001 * 119.97038 * 180.27631 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7103 1.2304 6 6 1.6977 -2.0341 1.4481 7 6 2.1574 -2.6877 2.5751 8 6 2.9558 -2.0148 3.4885 9 8 3.4097 -2.6557 4.5976 10 6 2.9306 -3.9832 4.8215 11 1 1.8851 -4.0694 4.5256 12 6 3.1205 -4.3923 6.3060 13 6 3.2082 -5.9369 6.1921 14 7 3.9578 -6.1786 4.9459 15 6 4.6783 -7.3059 4.6539 16 1 5.4051 -7.2904 3.8552 17 6 4.4744 -8.4686 5.3843 18 7 3.3170 -8.6809 5.9739 19 14 5.8428 -9.7318 5.5304 20 1 5.3760 -10.8738 6.3571 21 1 7.0266 -9.1070 6.1734 22 1 6.2137 -10.2185 4.1774 23 6 3.7983 -5.0117 4.0659 24 6 3.2860 -0.6851 3.2704 25 6 2.8288 -0.0378 2.1388 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6766 -1.7489 -1.2491 33 1 1.6766 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2494 35 1 1.0764 -2.5576 0.7366 36 1 1.8961 -3.7218 2.7445 37 1 4.0417 -3.9742 6.7118 38 1 2.2610 -4.0941 6.9065 39 1 2.2110 -6.3719 6.1255 40 1 3.7469 -6.3498 7.0450 41 1 2.5774 -8.0715 5.8242 42 1 4.7739 -4.5803 3.8420 43 1 3.3012 -5.3089 3.1425 44 1 3.9037 -0.1578 3.9823 45 1 3.0892 0.9960 1.9663 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225257913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:37 Heat of formation + Delta-G solvation = -18.776795 kcal Electronic energy + Delta-G solvation = -22997.734379 eV Core-core repulsion = 19786.908768 eV Total energy + Delta-G solvation = -3210.825610 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.51806 -40.04000 -38.41338 -36.41101 -34.48254 -32.20345 -31.27572 -30.04019 -29.16621 -28.17161 -28.07632 -26.43094 -23.90893 -23.64908 -22.22559 -21.73550 -20.09639 -19.69301 -19.37534 -17.29946 -16.92285 -16.54001 -16.18552 -15.66107 -15.57282 -15.44154 -15.17402 -15.01490 -14.78567 -14.44208 -14.21023 -14.03411 -13.64181 -13.53135 -13.21115 -12.82979 -12.73560 -12.68230 -12.63012 -12.56114 -12.51087 -12.23935 -11.94422 -11.89008 -11.73411 -11.65263 -11.59724 -11.49033 -11.30834 -10.62786 -9.96526 -9.14277 -9.03335 -8.38554 -5.44351 0.37408 0.44277 1.55525 1.63695 1.83213 2.08241 2.60209 2.76857 3.12368 3.40117 3.49732 3.70427 3.72594 3.78161 3.82716 3.97501 4.10895 4.15903 4.26969 4.34995 4.40163 4.41930 4.49646 4.65123 4.69390 4.79001 4.80614 4.83567 4.88419 4.93235 4.93299 5.01529 5.06184 5.06762 5.10571 5.15220 5.23906 5.36001 5.43101 5.46536 5.51614 5.56464 5.72305 5.86068 6.23915 6.42399 6.80165 7.60314 8.15903 8.92936 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028743 B = 0.003155 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.925037 B = 8873.265280 C = 9256.541683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.024 4.024 3 C -0.144 4.144 4 C -0.139 4.139 5 C -0.111 4.111 6 C -0.080 4.080 7 C -0.217 4.217 8 C 0.103 3.897 9 O -0.314 6.314 10 C 0.090 3.910 11 H 0.090 0.910 12 C -0.112 4.112 13 C 0.147 3.853 14 N -0.624 5.624 15 C -0.353 4.353 16 H 0.058 0.942 17 C -0.073 4.073 18 N -0.944 5.944 19 Si 1.119 2.881 20 H -0.287 1.287 21 H -0.280 1.280 22 H -0.274 1.274 23 C 0.119 3.881 24 C -0.159 4.159 25 C -0.081 4.081 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.133 0.867 36 H 0.117 0.883 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.019 0.981 40 H 0.033 0.967 41 H 0.258 0.742 42 H 0.025 0.975 43 H 0.022 0.978 44 H 0.138 0.862 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.230 21.501 -10.893 24.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.024 4.024 3 C -0.201 4.201 4 C -0.197 4.197 5 C -0.111 4.111 6 C -0.098 4.098 7 C -0.236 4.236 8 C 0.058 3.942 9 O -0.228 6.228 10 C 0.033 3.967 11 H 0.108 0.892 12 C -0.150 4.150 13 C 0.022 3.978 14 N -0.352 5.352 15 C -0.481 4.481 16 H 0.075 0.925 17 C -0.269 4.269 18 N -0.586 5.586 19 Si 0.943 3.057 20 H -0.212 1.212 21 H -0.206 1.206 22 H -0.200 1.200 23 C -0.007 4.007 24 C -0.178 4.178 25 C -0.098 4.098 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.151 0.849 36 H 0.135 0.865 37 H 0.098 0.902 38 H 0.125 0.875 39 H 0.037 0.963 40 H 0.051 0.949 41 H 0.068 0.932 42 H 0.043 0.957 43 H 0.040 0.960 44 H 0.156 0.844 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -4.607 20.077 -10.076 22.931 hybrid contribution -0.568 0.642 -0.729 1.125 sum -5.175 20.719 -10.805 23.933 Atomic orbital electron populations 1.21893 0.93292 1.01960 1.02341 1.19479 0.95969 0.95529 0.91446 1.21968 1.01313 0.94026 1.02750 1.21908 1.00911 1.00148 0.96696 1.20012 0.99593 0.93832 0.97644 1.20936 0.98452 0.94655 0.95775 1.21398 1.03758 1.00862 0.97556 1.19401 0.94966 0.92969 0.86873 1.86088 1.67081 1.28279 1.41311 1.23248 0.97265 0.79176 0.97029 0.89192 1.22870 1.03924 0.94488 0.93684 1.21555 0.94424 0.92941 0.88894 1.44708 1.59873 1.16142 1.14474 1.20034 1.16405 0.90160 1.21548 0.92461 1.27264 1.02409 0.99206 0.98064 1.70903 1.01456 1.38171 1.48085 0.82812 0.72427 0.73491 0.77009 1.21230 1.20637 1.19969 1.21821 0.97183 0.88429 0.93249 1.20688 1.04900 0.91492 1.00707 1.21269 0.95759 1.00866 0.91938 0.92777 0.90958 0.92996 0.92137 0.91138 0.91852 0.93072 0.90882 0.93124 0.84916 0.86489 0.90188 0.87502 0.96291 0.94862 0.93158 0.95743 0.96017 0.84392 0.82503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.29 71.98 0.60 -1.30 16 2 C -0.02 -0.37 0.85 -52.93 -0.05 -0.41 16 3 C -0.14 -1.68 7.13 71.98 0.51 -1.17 16 4 C -0.14 -2.07 8.29 71.98 0.60 -1.47 16 5 C -0.11 -2.30 4.76 -19.85 -0.09 -2.40 16 6 C -0.08 -1.96 8.70 22.26 0.19 -1.76 16 7 C -0.22 -6.45 8.80 22.37 0.20 -6.25 16 8 C 0.10 3.19 6.63 22.51 0.15 3.34 16 9 O -0.31 -11.03 9.87 -92.48 -0.91 -11.94 16 10 C 0.09 3.32 2.76 31.78 0.09 3.41 16 11 H 0.09 3.10 6.52 -2.39 -0.02 3.09 16 12 C -0.11 -4.12 6.82 32.06 0.22 -3.91 16 13 C 0.15 7.07 5.26 86.93 0.46 7.53 16 14 N -0.62 -33.54 3.30 -691.55 -2.28 -35.82 16 15 C -0.35 -20.94 10.05 84.03 0.84 -20.09 16 16 H 0.06 3.39 7.95 -2.91 -0.02 3.37 16 17 C -0.07 -4.31 5.13 84.86 0.43 -3.87 16 18 N -0.94 -58.53 12.90 21.65 0.28 -58.25 16 19 Si 1.12 52.01 29.99 68.60 2.06 54.06 16 20 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 C 0.12 5.39 6.56 86.73 0.57 5.96 16 24 C -0.16 -4.08 9.99 22.37 0.22 -3.86 16 25 C -0.08 -1.68 8.97 22.26 0.20 -1.48 16 26 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.05 0.77 7.38 -2.39 -0.02 0.75 16 29 H 0.06 0.70 7.51 -2.38 -0.02 0.69 16 30 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.06 0.70 7.51 -2.39 -0.02 0.68 16 32 H 0.05 0.81 7.38 -2.39 -0.02 0.80 16 33 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.13 2.81 7.09 -2.91 -0.02 2.79 16 36 H 0.12 3.71 5.37 -2.91 -0.02 3.69 16 37 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 38 H 0.11 3.21 8.14 -2.38 -0.02 3.19 16 39 H 0.02 0.96 6.76 -2.39 -0.02 0.95 16 40 H 0.03 1.74 7.90 -2.39 -0.02 1.72 16 41 H 0.26 16.08 5.85 -92.71 -0.54 15.54 16 42 H 0.02 1.16 8.06 -2.39 -0.02 1.14 16 43 H 0.02 1.00 7.49 -2.39 -0.02 0.99 16 44 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 45 H 0.16 2.33 5.89 -2.91 -0.02 2.31 16 Total: -1.00 -69.04 350.08 5.47 -63.57 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 1.18 Total: 16.11 kcal Atomic # 6 Polarization: -32.87 SS G_CDS: 5.14 Total: -27.72 kcal Atomic # 7 Polarization: -92.07 SS G_CDS: -2.00 Total: -94.07 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -0.91 Total: -11.94 kcal Atomic # 14 Polarization: 52.01 SS G_CDS: 2.06 Total: 54.06 kcal Total: -69.04 5.47 -63.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225257913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.791 kcal (2) G-P(sol) polarization free energy of solvation -69.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds