Wall clock time and date at job start Tue Mar 31 2020 06:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50705 * 109.46715 * 2 1 4 4 C 1.38145 * 120.02939 * 265.25338 * 3 2 1 5 5 C 1.38269 * 120.05083 * 180.25353 * 4 3 2 6 6 C 1.38262 * 120.11783 * 359.77226 * 5 4 3 7 7 C 1.38154 * 120.05015 * 359.97183 * 6 5 4 8 8 C 1.50701 * 120.02207 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.47043 * 262.08316 * 8 7 6 10 10 C 1.38729 * 120.02540 * 85.00111 * 3 2 1 11 11 O 1.35904 * 120.05583 * 359.97438 * 10 3 2 12 12 C 1.42893 * 117.00209 * 271.62953 * 11 10 3 13 13 H 1.08998 * 110.64405 * 15.51440 * 12 11 10 14 14 C 1.55156 * 110.71917 * 138.65936 * 12 11 10 15 15 C 1.54912 * 101.58370 * 153.86666 * 14 12 11 16 16 N 1.47426 * 104.83131 * 322.98827 * 15 14 12 17 17 C 1.36933 * 125.65178 * 204.09272 * 16 15 14 18 18 H 1.07995 * 120.00539 * 180.02562 * 17 16 15 19 19 C 1.38816 * 119.99683 * 0.02562 * 17 16 15 20 20 N 1.31616 * 120.00202 * 359.72927 * 19 17 16 21 21 Si 1.86801 * 119.99941 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47107 * 60.00271 * 21 19 17 23 23 H 1.48499 * 109.47293 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47403 * 300.00259 * 21 19 17 25 25 C 1.47027 * 108.70091 * 24.35494 * 16 15 14 26 26 H 1.08998 * 109.47410 * 299.99350 * 1 2 3 27 27 H 1.09001 * 109.47495 * 60.00059 * 1 2 3 28 28 H 1.09003 * 109.46451 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47410 * 240.00650 * 2 1 3 30 30 H 1.08992 * 109.47294 * 119.99870 * 2 1 3 31 31 H 1.07997 * 119.97137 * 359.97438 * 4 3 2 32 32 H 1.07997 * 119.94067 * 179.74073 * 5 4 3 33 33 H 1.07998 * 119.97611 * 179.97438 * 6 5 4 34 34 H 1.08996 * 109.47511 * 22.08502 * 8 7 6 35 35 H 1.09004 * 109.46693 * 142.09294 * 8 7 6 36 36 H 1.09003 * 109.47413 * 180.02562 * 9 8 7 37 37 H 1.09002 * 109.47538 * 300.00330 * 9 8 7 38 38 H 1.09005 * 109.47012 * 60.00273 * 9 8 7 39 39 H 1.08993 * 111.00553 * 35.78986 * 14 12 11 40 40 H 1.09003 * 111.03926 * 271.95171 * 14 12 11 41 41 H 1.09001 * 110.36852 * 204.15020 * 15 14 12 42 42 H 1.09000 * 110.46348 * 81.87129 * 15 14 12 43 43 H 0.97000 * 119.99883 * 180.02562 * 20 19 17 44 44 H 1.08999 * 109.87990 * 118.13094 * 25 16 15 45 45 H 1.08997 * 109.88094 * 239.29649 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3560 2.0397 -1.1919 5 6 2.8218 3.3416 -1.1920 6 6 2.9604 4.0289 -0.0004 7 6 2.6330 3.4162 1.1938 8 6 2.7848 4.1658 2.4923 9 6 4.1103 3.7799 3.1520 10 6 2.1649 2.1103 1.1966 11 8 1.8418 1.5056 2.3700 12 6 0.4834 1.6097 2.8009 13 1 -0.1561 1.9357 1.9807 14 6 -0.0136 0.2593 3.3811 15 6 -1.1258 0.7283 4.3521 16 7 -0.6152 1.9836 4.9326 17 6 -0.9916 2.5175 6.1361 18 1 -0.5574 3.4467 6.4742 19 6 -1.9314 1.8642 6.9216 20 7 -2.4646 0.7345 6.5072 21 14 -2.4444 2.5921 8.5637 22 1 -3.0321 3.9385 8.3464 23 1 -3.4524 1.7089 9.2034 24 1 -1.2563 2.7073 9.4470 25 6 0.3604 2.5706 4.0024 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.2494 1.5047 -2.1240 32 1 3.0783 3.8222 -2.1245 33 1 3.3248 5.0456 -0.0030 34 1 2.7752 5.2379 2.2963 35 1 1.9601 3.9105 3.1577 36 1 4.2200 4.3217 4.0914 37 1 4.1200 2.7077 3.3480 38 1 4.9351 4.0350 2.4865 39 1 0.7846 -0.2522 3.9191 40 1 -0.4229 -0.3769 2.5963 41 1 -1.2846 -0.0142 5.1341 42 1 -2.0532 0.9110 3.8094 43 1 -3.1216 0.2783 7.0559 44 1 0.0104 3.5462 3.6651 45 1 1.3277 2.6713 4.4947 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226175686.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:54 Heat of formation + Delta-G solvation = 0.263103 kcal Electronic energy + Delta-G solvation = -24096.044300 eV Core-core repulsion = 20886.044322 eV Total energy + Delta-G solvation = -3209.999979 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.32323 -37.85326 -35.89972 -34.97667 -32.72659 -32.29266 -29.63391 -28.99629 -28.64036 -27.14279 -24.46016 -23.97091 -23.62818 -21.58061 -20.30361 -20.27920 -19.95660 -17.68915 -17.01052 -16.12572 -15.50335 -15.03764 -14.63805 -14.60585 -14.12608 -13.82378 -13.73551 -13.34539 -13.30854 -12.90877 -12.69711 -12.44228 -12.31943 -12.04565 -11.91447 -11.70201 -11.56469 -11.40049 -11.08996 -10.94447 -10.81939 -10.72446 -10.68953 -10.52521 -10.36019 -10.12932 -9.75760 -9.57292 -9.24481 -8.66140 -8.57208 -8.35964 -6.85460 -5.66221 -3.08115 1.29294 1.38191 3.40931 3.44771 3.46111 3.53914 4.14709 4.49737 4.75632 4.79432 4.92005 5.20141 5.24988 5.33734 5.37127 5.39803 5.46188 5.50078 5.50410 5.57103 5.59166 5.64541 5.69630 5.82035 5.88607 5.94213 6.03752 6.09534 6.13276 6.22710 6.32911 6.33609 6.43979 6.49168 6.51373 6.56204 6.57784 6.63966 6.67281 6.73616 6.96412 7.47056 7.61178 7.81415 7.97475 8.34131 9.20473 9.81245 10.45194 11.37922 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021052 B = 0.004659 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.734918 B = 6008.493071 C = 6986.565609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.081 4.081 3 C -0.099 4.099 4 C -0.116 4.116 5 C -0.127 4.127 6 C -0.115 4.115 7 C -0.092 4.092 8 C -0.093 4.093 9 C -0.140 4.140 10 C 0.107 3.893 11 O -0.322 6.322 12 C 0.084 3.916 13 H 0.067 0.933 14 C -0.145 4.145 15 C 0.153 3.847 16 N -0.600 5.600 17 C -0.223 4.223 18 H 0.077 0.923 19 C -0.010 4.010 20 N -0.923 5.923 21 Si 0.915 3.085 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.122 3.878 26 H 0.067 0.933 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.048 0.952 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.111 0.889 42 H 0.013 0.987 43 H 0.253 0.747 44 H 0.023 0.977 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.882 2.044 -15.031 18.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.118 4.118 3 C -0.099 4.099 4 C -0.134 4.134 5 C -0.145 4.145 6 C -0.133 4.133 7 C -0.093 4.093 8 C -0.131 4.131 9 C -0.198 4.198 10 C 0.063 3.937 11 O -0.239 6.239 12 C 0.029 3.971 13 H 0.085 0.915 14 C -0.184 4.184 15 C 0.028 3.972 16 N -0.328 5.328 17 C -0.351 4.351 18 H 0.095 0.905 19 C -0.205 4.205 20 N -0.572 5.572 21 Si 0.746 3.254 22 H -0.212 1.212 23 H -0.215 1.215 24 H -0.211 1.211 25 C -0.004 4.004 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.129 0.871 42 H 0.031 0.969 43 H 0.064 0.936 44 H 0.040 0.960 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 9.843 1.892 -14.719 17.808 hybrid contribution -0.407 0.618 0.531 0.911 sum 9.437 2.510 -14.189 17.224 Atomic orbital electron populations 1.21977 0.94738 1.02095 1.02612 1.20427 0.96264 0.92233 1.02865 1.20261 1.00093 0.97135 0.92438 1.20872 1.00431 0.95128 0.96962 1.21054 1.00744 0.94878 0.97841 1.20907 1.00945 0.99852 0.91629 1.20283 0.99668 0.93464 0.95871 1.20662 1.00019 0.98487 0.93886 1.21664 0.95867 1.02453 0.99767 1.18442 0.98987 0.90603 0.85650 1.86043 1.28715 1.73704 1.35411 1.23555 0.79635 0.98213 0.95733 0.91538 1.23343 1.00542 0.94912 0.99598 1.21953 0.90528 0.90218 0.94499 1.44383 1.46607 1.23538 1.18229 1.19032 1.18641 1.04513 0.92907 0.90485 1.24780 0.99133 0.97509 0.99093 1.69762 1.32220 1.17490 1.37694 0.86143 0.78008 0.77987 0.83299 1.21211 1.21530 1.21108 1.21689 0.94200 0.94149 0.90378 0.91380 0.93003 0.92235 0.91467 0.90201 0.86130 0.86227 0.86073 0.91593 0.89316 0.92509 0.91921 0.93322 0.90984 0.91650 0.87119 0.96859 0.93626 0.95976 0.94394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.54 37.16 0.35 -1.58 16 2 C -0.08 -1.00 5.79 -27.88 -0.16 -1.16 16 3 C -0.10 -1.35 5.15 -104.47 -0.54 -1.89 16 4 C -0.12 -1.36 9.68 -39.60 -0.38 -1.74 16 5 C -0.13 -1.41 10.04 -39.56 -0.40 -1.81 16 6 C -0.12 -1.40 9.67 -39.60 -0.38 -1.78 16 7 C -0.09 -1.32 5.15 -104.47 -0.54 -1.86 16 8 C -0.09 -1.30 5.75 -27.88 -0.16 -1.46 16 9 C -0.14 -1.83 9.89 37.16 0.37 -1.46 16 10 C 0.11 1.66 5.48 -39.22 -0.22 1.45 16 11 O -0.32 -5.61 8.26 -19.44 -0.16 -5.77 16 12 C 0.08 1.56 2.55 -24.89 -0.06 1.50 16 13 H 0.07 1.22 6.37 -51.93 -0.33 0.89 16 14 C -0.15 -2.83 6.56 -24.58 -0.16 -2.99 16 15 C 0.15 3.72 5.88 -2.53 -0.01 3.70 16 16 N -0.60 -15.57 3.39 -170.06 -0.58 -16.15 16 17 C -0.22 -6.25 10.27 -15.06 -0.15 -6.40 16 18 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 19 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 20 N -0.92 -26.80 10.09 55.49 0.56 -26.24 16 21 Si 0.92 22.07 29.55 -169.99 -5.02 17.05 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 25 C 0.12 2.64 5.21 -3.06 -0.02 2.62 16 26 H 0.07 0.97 3.57 -51.93 -0.19 0.79 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 30 H 0.08 1.08 7.69 -51.93 -0.40 0.68 16 31 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 32 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.12 1.21 8.05 -52.49 -0.42 0.79 16 34 H 0.07 0.80 8.03 -51.93 -0.42 0.38 16 35 H 0.09 1.42 4.21 -51.93 -0.22 1.21 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 40 H 0.06 1.11 6.57 -51.93 -0.34 0.77 16 41 H 0.11 3.01 5.88 -51.93 -0.31 2.71 16 42 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.02 0.48 7.74 -51.93 -0.40 0.08 16 45 H 0.04 0.84 7.29 -51.93 -0.38 0.46 16 LS Contribution 347.40 15.07 5.24 5.24 Total: -1.00 -29.76 347.40 -9.69 -39.45 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -7.17 Total: 1.65 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: -2.56 Total: -15.23 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: -0.02 Total: -42.39 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.16 Total: -5.77 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.76 -9.69 -39.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226175686.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.718 kcal (2) G-P(sol) polarization free energy of solvation -29.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds