Wall clock time and date at job start Tue Mar 31 2020 06:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50705 * 109.46715 * 2 1 4 4 C 1.38145 * 120.02939 * 265.25338 * 3 2 1 5 5 C 1.38269 * 120.05083 * 180.25353 * 4 3 2 6 6 C 1.38262 * 120.11783 * 359.77226 * 5 4 3 7 7 C 1.38154 * 120.05015 * 359.97183 * 6 5 4 8 8 C 1.50701 * 120.02207 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.47043 * 262.08316 * 8 7 6 10 10 C 1.38729 * 120.02540 * 85.00111 * 3 2 1 11 11 O 1.35904 * 120.05583 * 359.97438 * 10 3 2 12 12 C 1.42893 * 117.00209 * 271.62953 * 11 10 3 13 13 H 1.08998 * 110.64405 * 15.51440 * 12 11 10 14 14 C 1.55156 * 110.71917 * 138.65936 * 12 11 10 15 15 C 1.54912 * 101.58370 * 153.86666 * 14 12 11 16 16 N 1.47426 * 104.83131 * 322.98827 * 15 14 12 17 17 C 1.36933 * 125.65178 * 204.09272 * 16 15 14 18 18 H 1.07995 * 120.00539 * 180.02562 * 17 16 15 19 19 C 1.38816 * 119.99683 * 0.02562 * 17 16 15 20 20 N 1.31616 * 120.00202 * 359.72927 * 19 17 16 21 21 Si 1.86801 * 119.99941 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47107 * 60.00271 * 21 19 17 23 23 H 1.48499 * 109.47293 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47403 * 300.00259 * 21 19 17 25 25 C 1.47027 * 108.70091 * 24.35494 * 16 15 14 26 26 H 1.08998 * 109.47410 * 299.99350 * 1 2 3 27 27 H 1.09001 * 109.47495 * 60.00059 * 1 2 3 28 28 H 1.09003 * 109.46451 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47410 * 240.00650 * 2 1 3 30 30 H 1.08992 * 109.47294 * 119.99870 * 2 1 3 31 31 H 1.07997 * 119.97137 * 359.97438 * 4 3 2 32 32 H 1.07997 * 119.94067 * 179.74073 * 5 4 3 33 33 H 1.07998 * 119.97611 * 179.97438 * 6 5 4 34 34 H 1.08996 * 109.47511 * 22.08502 * 8 7 6 35 35 H 1.09004 * 109.46693 * 142.09294 * 8 7 6 36 36 H 1.09003 * 109.47413 * 180.02562 * 9 8 7 37 37 H 1.09002 * 109.47538 * 300.00330 * 9 8 7 38 38 H 1.09005 * 109.47012 * 60.00273 * 9 8 7 39 39 H 1.08993 * 111.00553 * 35.78986 * 14 12 11 40 40 H 1.09003 * 111.03926 * 271.95171 * 14 12 11 41 41 H 1.09001 * 110.36852 * 204.15020 * 15 14 12 42 42 H 1.09000 * 110.46348 * 81.87129 * 15 14 12 43 43 H 0.97000 * 119.99883 * 180.02562 * 20 19 17 44 44 H 1.08999 * 109.87990 * 118.13094 * 25 16 15 45 45 H 1.08997 * 109.88094 * 239.29649 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3560 2.0397 -1.1919 5 6 2.8218 3.3416 -1.1920 6 6 2.9604 4.0289 -0.0004 7 6 2.6330 3.4162 1.1938 8 6 2.7848 4.1658 2.4923 9 6 4.1103 3.7799 3.1520 10 6 2.1649 2.1103 1.1966 11 8 1.8418 1.5056 2.3700 12 6 0.4834 1.6097 2.8009 13 1 -0.1561 1.9357 1.9807 14 6 -0.0136 0.2593 3.3811 15 6 -1.1258 0.7283 4.3521 16 7 -0.6152 1.9836 4.9326 17 6 -0.9916 2.5175 6.1361 18 1 -0.5574 3.4467 6.4742 19 6 -1.9314 1.8642 6.9216 20 7 -2.4646 0.7345 6.5072 21 14 -2.4444 2.5921 8.5637 22 1 -3.0321 3.9385 8.3464 23 1 -3.4524 1.7089 9.2034 24 1 -1.2563 2.7073 9.4470 25 6 0.3604 2.5706 4.0024 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.2494 1.5047 -2.1240 32 1 3.0783 3.8222 -2.1245 33 1 3.3248 5.0456 -0.0030 34 1 2.7752 5.2379 2.2963 35 1 1.9601 3.9105 3.1577 36 1 4.2200 4.3217 4.0914 37 1 4.1200 2.7077 3.3480 38 1 4.9351 4.0350 2.4865 39 1 0.7846 -0.2522 3.9191 40 1 -0.4229 -0.3769 2.5963 41 1 -1.2846 -0.0142 5.1341 42 1 -2.0532 0.9110 3.8094 43 1 -3.1216 0.2783 7.0559 44 1 0.0104 3.5462 3.6651 45 1 1.3277 2.6713 4.4947 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226175686.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:54 Heat of formation + Delta-G solvation = -14.294152 kcal Electronic energy + Delta-G solvation = -24096.675550 eV Core-core repulsion = 20886.044322 eV Total energy + Delta-G solvation = -3210.631228 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.45972 -39.29954 -37.44417 -35.97528 -34.28472 -33.71114 -31.36329 -30.08693 -29.87875 -28.81141 -26.42758 -24.93137 -24.69185 -22.80056 -22.12225 -21.59224 -21.16740 -19.09684 -18.83296 -17.24558 -16.84707 -16.49623 -16.28256 -16.03006 -15.27100 -15.13020 -14.93939 -14.74621 -14.42543 -14.34784 -13.97555 -13.74664 -13.61335 -13.57701 -13.24830 -12.99326 -12.94172 -12.78713 -12.65672 -12.35905 -12.26440 -12.14598 -12.03507 -11.91227 -11.75414 -11.62737 -11.56291 -11.33709 -10.76593 -10.63664 -9.52443 -9.40494 -8.93979 -7.79635 -5.25090 0.27407 0.42816 1.46366 1.49849 1.56260 2.40282 2.52560 3.00725 3.31392 3.62538 3.76591 3.79021 3.86239 4.00943 4.01988 4.09075 4.27348 4.35368 4.40844 4.49538 4.51228 4.58761 4.59482 4.61141 4.68372 4.74019 4.82174 4.90573 4.95683 4.96195 5.06134 5.09935 5.12059 5.16214 5.25584 5.37244 5.42119 5.43409 5.56510 5.57292 5.60685 5.72459 5.74808 5.95124 6.26447 6.70930 7.07309 7.73119 8.36890 9.22459 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021052 B = 0.004659 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.734918 B = 6008.493071 C = 6986.565609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.079 4.079 3 C -0.107 4.107 4 C -0.117 4.117 5 C -0.118 4.118 6 C -0.119 4.119 7 C -0.106 4.106 8 C -0.095 4.095 9 C -0.135 4.135 10 C 0.069 3.931 11 O -0.328 6.328 12 C 0.106 3.894 13 H 0.071 0.929 14 C -0.128 4.128 15 C 0.156 3.844 16 N -0.622 5.622 17 C -0.245 4.245 18 H 0.079 0.921 19 C -0.062 4.062 20 N -0.948 5.948 21 Si 0.982 3.018 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.277 1.277 25 C 0.124 3.876 26 H 0.043 0.957 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.062 0.938 31 H 0.149 0.851 32 H 0.154 0.846 33 H 0.144 0.856 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.039 0.961 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.080 0.920 42 H -0.005 1.005 43 H 0.249 0.751 44 H 0.022 0.978 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.999 2.967 -17.305 20.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.116 4.116 3 C -0.108 4.108 4 C -0.134 4.134 5 C -0.135 4.135 6 C -0.137 4.137 7 C -0.107 4.107 8 C -0.132 4.132 9 C -0.192 4.192 10 C 0.026 3.974 11 O -0.244 6.244 12 C 0.050 3.950 13 H 0.089 0.911 14 C -0.167 4.167 15 C 0.032 3.968 16 N -0.349 5.349 17 C -0.373 4.373 18 H 0.097 0.903 19 C -0.255 4.255 20 N -0.597 5.597 21 Si 0.810 3.190 22 H -0.204 1.204 23 H -0.216 1.216 24 H -0.203 1.203 25 C -0.001 4.001 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.110 0.890 30 H 0.081 0.919 31 H 0.167 0.833 32 H 0.171 0.829 33 H 0.162 0.838 34 H 0.102 0.898 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.058 0.942 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.111 0.889 41 H 0.098 0.902 42 H 0.013 0.987 43 H 0.059 0.941 44 H 0.040 0.960 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 10.987 2.825 -17.014 20.450 hybrid contribution -0.683 0.385 1.122 1.369 sum 10.304 3.210 -15.892 19.211 Atomic orbital electron populations 1.21947 0.94766 1.02627 1.01885 1.20438 0.96167 0.91798 1.03210 1.20470 1.00130 0.97642 0.92511 1.21238 0.99414 0.95587 0.97199 1.21491 0.98712 0.94541 0.98786 1.21219 1.00433 1.00926 0.91121 1.20420 1.00271 0.93260 0.96733 1.20648 0.99235 0.99635 0.93661 1.21611 0.96206 1.00968 1.00406 1.18766 1.01402 0.91760 0.85483 1.86037 1.27337 1.74095 1.36953 1.23135 0.81069 0.96244 0.94537 0.91074 1.23120 0.98667 0.95775 0.99102 1.21726 0.91579 0.89214 0.94323 1.44682 1.47328 1.24377 1.18554 1.19403 1.18961 1.04857 0.94097 0.90292 1.25635 0.99301 0.98015 1.02524 1.70009 1.32458 1.18523 1.38707 0.85104 0.77577 0.77301 0.79039 1.20386 1.21622 1.20298 1.21769 0.92699 0.94797 0.90883 0.93783 0.91930 0.91103 0.89001 0.91942 0.83348 0.82854 0.83796 0.89766 0.92070 0.92045 0.94156 0.91597 0.91614 0.88928 0.90224 0.98748 0.94104 0.96023 0.95056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 9.54 71.98 0.69 -2.87 16 2 C -0.08 -1.81 5.79 29.85 0.17 -1.63 16 3 C -0.11 -2.71 5.15 -19.77 -0.10 -2.81 16 4 C -0.12 -2.31 9.68 22.26 0.22 -2.09 16 5 C -0.12 -2.13 10.04 22.28 0.22 -1.91 16 6 C -0.12 -2.53 9.67 22.26 0.22 -2.31 16 7 C -0.11 -2.90 5.15 -19.77 -0.10 -3.00 16 8 C -0.09 -2.59 5.75 29.85 0.17 -2.42 16 9 C -0.13 -3.46 9.89 71.98 0.71 -2.75 16 10 C 0.07 2.09 5.48 22.50 0.12 2.22 16 11 O -0.33 -11.55 8.26 -92.47 -0.76 -12.31 16 12 C 0.11 4.03 2.55 31.79 0.08 4.11 16 13 H 0.07 2.63 6.37 -2.39 -0.02 2.62 16 14 C -0.13 -5.11 6.56 31.99 0.21 -4.90 16 15 C 0.16 7.95 5.88 86.86 0.51 8.46 16 16 N -0.62 -33.48 3.39 -691.96 -2.35 -35.83 16 17 C -0.24 -14.11 10.27 84.04 0.86 -13.25 16 18 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 19 C -0.06 -3.56 5.49 84.86 0.47 -3.10 16 20 N -0.95 -56.80 10.09 21.65 0.22 -56.58 16 21 Si 0.98 46.06 29.55 68.60 2.03 48.09 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 23 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 24 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 25 C 0.12 5.55 5.21 86.73 0.45 6.00 16 26 H 0.04 1.22 3.57 -2.39 -0.01 1.21 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.09 1.62 8.05 -2.39 -0.02 1.60 16 30 H 0.06 1.64 7.69 -2.39 -0.02 1.62 16 31 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 32 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 33 H 0.14 2.33 8.05 -2.91 -0.02 2.31 16 34 H 0.08 1.93 8.03 -2.39 -0.02 1.91 16 35 H 0.06 2.01 4.21 -2.39 -0.01 2.00 16 36 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.09 3.15 6.57 -2.39 -0.02 3.13 16 41 H 0.08 4.56 5.88 -2.39 -0.01 4.54 16 42 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 43 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 44 H 0.02 0.97 7.74 -2.39 -0.02 0.95 16 45 H 0.03 1.44 7.29 -2.39 -0.02 1.42 16 Total: -1.00 -66.25 347.40 5.00 -61.25 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.96 Total: 17.65 kcal Atomic # 6 Polarization: -27.16 SS G_CDS: 4.90 Total: -22.26 kcal Atomic # 7 Polarization: -90.28 SS G_CDS: -2.13 Total: -92.41 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -0.76 Total: -12.31 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -66.25 5.00 -61.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226175686.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.957 kcal (2) G-P(sol) polarization free energy of solvation -66.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds