Wall clock time and date at job start Tue Mar 31 2020 06:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47239 * 2 1 4 4 C 1.38149 * 120.02488 * 264.99823 * 3 2 1 5 5 C 1.38263 * 120.05518 * 179.97438 * 4 3 2 6 6 C 1.38273 * 120.11179 * 0.02562 * 5 4 3 7 7 C 1.38140 * 120.05512 * 359.97356 * 6 5 4 8 8 C 1.50696 * 120.02795 * 180.02562 * 7 6 5 9 9 C 1.52994 * 109.47304 * 265.00246 * 8 7 6 10 10 C 1.38728 * 120.03244 * 84.72150 * 3 2 1 11 11 O 1.35902 * 120.05267 * 359.97438 * 10 3 2 12 12 C 1.42906 * 116.99830 * 90.00326 * 11 10 3 13 13 C 1.53931 * 113.73316 * 248.76657 * 12 11 10 14 14 N 1.48187 * 86.10248 * 221.95675 * 13 12 11 15 15 C 1.46898 * 111.07278 * 137.51977 * 14 13 12 16 16 C 1.50697 * 109.47246 * 70.56795 * 15 14 13 17 17 H 1.08004 * 119.99874 * 359.97438 * 16 15 14 18 18 C 1.37872 * 120.00491 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99381 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00571 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46930 * 89.99769 * 20 18 16 22 22 H 1.48495 * 109.47413 * 209.99585 * 20 18 16 23 23 H 1.48502 * 109.46986 * 329.99920 * 20 18 16 24 24 C 1.47961 * 90.79632 * 24.59859 * 14 13 12 25 25 H 1.09001 * 109.47002 * 60.00070 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00336 * 1 2 3 28 28 H 1.09001 * 109.46998 * 119.99373 * 2 1 3 29 29 H 1.09000 * 109.47050 * 239.99664 * 2 1 3 30 30 H 1.08000 * 119.97121 * 0.02562 * 4 3 2 31 31 H 1.08000 * 119.94623 * 179.97438 * 5 4 3 32 32 H 1.08002 * 119.97304 * 180.02562 * 6 5 4 33 33 H 1.09000 * 109.47327 * 25.00760 * 8 7 6 34 34 H 1.09004 * 109.47214 * 145.00268 * 8 7 6 35 35 H 1.08997 * 109.47345 * 59.99815 * 9 8 7 36 36 H 1.09001 * 109.47412 * 180.02562 * 9 8 7 37 37 H 1.08998 * 109.47145 * 299.99564 * 9 8 7 38 38 H 1.08996 * 112.93599 * 20.32958 * 12 11 10 39 39 H 1.09009 * 113.75891 * 336.23434 * 13 12 11 40 40 H 1.09000 * 113.76190 * 107.60253 * 13 12 11 41 41 H 1.09002 * 109.47143 * 190.56888 * 15 14 13 42 42 H 1.09001 * 109.47293 * 310.56767 * 15 14 13 43 43 H 0.97006 * 119.99392 * 180.02562 * 19 18 16 44 44 H 1.09004 * 113.75984 * 221.08137 * 24 14 13 45 45 H 1.09005 * 113.75801 * 89.72454 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3612 2.0377 -1.1916 5 6 2.8216 3.3414 -1.1923 6 6 2.9548 4.0308 -0.0011 7 6 2.6274 3.4184 1.1930 8 6 2.7722 4.1704 2.4908 9 6 4.1296 3.8477 3.1186 10 6 2.1597 2.1122 1.1959 11 8 1.8311 1.5095 2.3688 12 6 2.8695 0.7988 3.0462 13 6 2.6693 -0.7274 3.0587 14 7 3.1148 -0.6728 4.4709 15 6 2.2856 -1.5381 5.3202 16 6 2.5836 -2.9821 5.0088 17 1 3.3156 -3.2320 4.2550 18 6 1.9212 -3.9843 5.6854 19 7 1.0295 -3.6799 6.6030 20 14 2.2902 -5.7742 5.2989 21 1 3.3914 -6.2525 6.1730 22 1 1.0754 -6.5934 5.5404 23 1 2.6972 -5.8997 3.8763 24 6 2.6854 0.7394 4.5733 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5137 0.8901 29 1 1.8934 -0.5139 -0.8900 30 1 2.2576 1.5015 -2.1233 31 1 3.0785 3.8219 -2.1248 32 1 3.3143 5.0492 -0.0044 33 1 2.7057 5.2414 2.2995 34 1 1.9762 3.8733 3.1737 35 1 4.9255 4.1447 2.4358 36 1 4.2341 4.3913 4.0576 37 1 4.1959 2.7767 3.3100 38 1 3.8677 1.1078 2.7363 39 1 1.6306 -1.0352 2.9375 40 1 3.3529 -1.2654 2.4018 41 1 2.5080 -1.3391 6.3686 42 1 1.2322 -1.3348 5.1274 43 1 0.5637 -4.3851 7.0793 44 1 3.3817 1.3714 5.1245 45 1 1.6514 0.8617 4.8961 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226177793.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:38 Heat of formation + Delta-G solvation = 5.135895 kcal Electronic energy + Delta-G solvation = -23654.929482 eV Core-core repulsion = 20445.140804 eV Total energy + Delta-G solvation = -3209.788678 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.50918 -38.87808 -36.39141 -35.03242 -32.88363 -32.76282 -29.71978 -29.04168 -28.51242 -25.76406 -24.99612 -24.05053 -23.71741 -21.99635 -21.12142 -20.28225 -19.37894 -17.80887 -16.53689 -16.18251 -15.69609 -15.56880 -14.83771 -14.44406 -14.21103 -13.97213 -13.86709 -13.74211 -13.37702 -13.17777 -12.78858 -12.44977 -12.41622 -12.12692 -12.09677 -11.93643 -11.61343 -11.57305 -11.44849 -11.19668 -10.94220 -10.86936 -10.73363 -10.64989 -10.53307 -10.26613 -9.70928 -9.34499 -9.17413 -8.64998 -8.52245 -8.45365 -7.82976 -6.06010 -4.08017 1.20847 1.30576 3.30621 3.36463 3.39845 3.44506 4.02409 4.40889 4.66545 4.70410 4.77939 4.85331 4.92657 5.11735 5.20478 5.26067 5.30505 5.32803 5.36270 5.42689 5.49311 5.51913 5.58221 5.70937 5.85361 5.94114 5.97097 6.02482 6.05928 6.07572 6.12148 6.20635 6.27635 6.33679 6.39059 6.42416 6.43640 6.49983 6.62483 6.67116 6.82857 7.21003 7.60915 7.80959 7.85640 8.08367 8.39191 8.98913 9.56476 11.05244 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020474 B = 0.004206 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.291319 B = 6655.263053 C = 7563.810660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 C -0.092 4.092 4 C -0.114 4.114 5 C -0.126 4.126 6 C -0.115 4.115 7 C -0.099 4.099 8 C -0.081 4.081 9 C -0.153 4.153 10 C 0.105 3.895 11 O -0.321 6.321 12 C 0.059 3.941 13 C 0.006 3.994 14 N -0.474 5.474 15 C 0.164 3.836 16 C -0.511 4.511 17 H 0.062 0.938 18 C 0.057 3.943 19 N -0.897 5.897 20 Si 0.898 3.102 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.273 1.273 24 C 0.003 3.997 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.033 0.967 42 H 0.001 0.999 43 H 0.262 0.738 44 H 0.083 0.917 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.548 15.327 -14.060 20.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.127 4.127 3 C -0.092 4.092 4 C -0.132 4.132 5 C -0.144 4.144 6 C -0.134 4.134 7 C -0.099 4.099 8 C -0.119 4.119 9 C -0.210 4.210 10 C 0.061 3.939 11 O -0.237 6.237 12 C 0.003 3.997 13 C -0.123 4.123 14 N -0.199 5.199 15 C 0.038 3.962 16 C -0.549 4.549 17 H 0.080 0.920 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.726 3.274 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.126 4.126 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.140 0.860 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.052 0.948 42 H 0.019 0.981 43 H 0.071 0.929 44 H 0.102 0.898 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.902 15.033 -13.635 20.501 hybrid contribution -0.588 -0.872 -0.344 1.106 sum 2.313 14.161 -13.979 20.032 Atomic orbital electron populations 1.21675 0.94466 1.01837 1.01907 1.20596 0.96617 0.92081 1.03417 1.20286 0.99401 0.96887 0.92662 1.20915 1.00133 0.95089 0.97110 1.21072 1.00632 0.94810 0.97881 1.20879 1.01015 0.99824 0.91636 1.20240 0.99164 0.94581 0.95932 1.20432 0.98935 0.98750 0.93762 1.21875 0.96077 1.02707 1.00316 1.18435 0.98725 0.90881 0.85832 1.86122 1.36378 1.68517 1.32718 1.24793 0.90297 0.91971 0.92609 1.24301 1.00878 0.93445 0.93695 1.68602 1.47460 1.01055 1.02769 1.20199 0.90458 0.92311 0.93247 1.21075 1.22442 0.90086 1.21342 0.92017 1.24982 0.95012 0.99395 0.95071 1.69963 1.26001 1.32984 1.24670 0.86493 0.77706 0.84443 0.78762 1.20568 1.21240 1.19833 1.24197 1.00746 0.94452 0.93167 0.93231 0.92306 0.92048 0.89682 0.91424 0.86006 0.86168 0.86091 0.91378 0.90236 0.92906 0.92250 0.91881 0.89137 0.90434 0.90279 0.94850 0.98110 0.92855 0.89843 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.90 37.16 0.37 -1.42 16 2 C -0.09 -1.18 5.78 -27.88 -0.16 -1.34 16 3 C -0.09 -1.22 5.15 -104.48 -0.54 -1.76 16 4 C -0.11 -1.29 9.68 -39.60 -0.38 -1.67 16 5 C -0.13 -1.29 10.04 -39.56 -0.40 -1.69 16 6 C -0.12 -1.24 9.68 -39.60 -0.38 -1.63 16 7 C -0.10 -1.24 5.15 -104.48 -0.54 -1.77 16 8 C -0.08 -0.91 5.79 -27.89 -0.16 -1.07 16 9 C -0.15 -1.64 9.89 37.15 0.37 -1.27 16 10 C 0.11 1.50 5.56 -39.22 -0.22 1.28 16 11 O -0.32 -5.13 8.51 -19.43 -0.17 -5.29 16 12 C 0.06 0.96 3.20 -25.80 -0.08 0.88 16 13 C 0.01 0.11 5.21 -2.64 -0.01 0.10 16 14 N -0.47 -10.33 6.25 -239.76 -1.50 -11.82 16 15 C 0.16 4.30 4.58 -4.98 -0.02 4.28 16 16 C -0.51 -14.46 8.84 -34.44 -0.30 -14.76 16 17 H 0.06 1.73 7.80 -52.48 -0.41 1.32 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 20 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 24 C 0.00 0.06 7.75 -2.76 -0.02 0.04 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.08 1.26 4.81 -51.93 -0.25 1.01 16 29 H 0.07 0.77 8.05 -51.93 -0.42 0.35 16 30 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 31 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.07 0.64 8.05 -51.93 -0.42 0.22 16 34 H 0.08 0.98 7.68 -51.93 -0.40 0.58 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.77 4.97 -51.93 -0.26 0.51 16 38 H 0.09 1.40 6.38 -51.93 -0.33 1.07 16 39 H 0.08 1.61 7.52 -51.92 -0.39 1.22 16 40 H 0.08 1.47 8.09 -51.93 -0.42 1.05 16 41 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.00 0.03 7.70 -51.93 -0.40 -0.37 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 44 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 45 H 0.07 1.36 7.79 -51.93 -0.40 0.96 16 LS Contribution 358.89 15.07 5.41 5.41 Total: -1.00 -30.19 358.89 -10.59 -40.78 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -7.46 Total: 0.51 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: -2.59 Total: -20.27 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: -0.76 Total: -37.81 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.17 Total: -5.29 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.19 -10.59 -40.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226177793.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.917 kcal (2) G-P(sol) polarization free energy of solvation -30.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds