Wall clock time and date at job start Tue Mar 31 2020 06:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47345 * 2 1 4 4 C 1.53003 * 109.47274 * 239.99603 * 2 1 3 5 5 C 1.50707 * 109.46843 * 119.99941 * 2 1 3 6 6 C 1.38169 * 120.03003 * 0.31633 * 5 2 1 7 7 C 1.38244 * 120.05434 * 180.29739 * 6 5 2 8 8 C 1.38281 * 120.11053 * 359.68400 * 7 6 5 9 9 C 1.38124 * 120.05958 * 359.97438 * 8 7 6 10 10 C 1.38715 * 120.02796 * 179.97438 * 5 2 1 11 11 O 1.35901 * 120.05017 * 359.97438 * 10 5 2 12 12 C 1.42908 * 116.99396 * 174.35120 * 11 10 5 13 13 H 1.08999 * 110.64520 * 321.84152 * 12 11 10 14 14 C 1.55158 * 110.86895 * 198.59664 * 12 11 10 15 15 C 1.55129 * 101.48470 * 205.89942 * 14 12 11 16 16 N 1.47425 * 104.72497 * 37.29521 * 15 14 12 17 17 C 1.36934 * 125.65378 * 155.81791 * 16 15 14 18 18 H 1.07994 * 120.00094 * 179.69417 * 17 16 15 19 19 C 1.38809 * 119.99650 * 359.41775 * 17 16 15 20 20 N 1.31617 * 119.99959 * 0.27597 * 19 17 16 21 21 Si 1.86801 * 119.99922 * 180.27560 * 19 17 16 22 22 H 1.48503 * 109.47231 * 60.00215 * 21 19 17 23 23 H 1.48500 * 109.47054 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47229 * 299.99644 * 21 19 17 25 25 C 1.47025 * 108.70146 * 335.55417 * 16 15 14 26 26 H 1.08997 * 109.47638 * 300.00266 * 1 2 3 27 27 H 1.09004 * 109.47121 * 60.00064 * 1 2 3 28 28 H 1.09003 * 109.47511 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47233 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47067 * 300.00045 * 3 2 1 31 31 H 1.09001 * 109.46816 * 59.99798 * 3 2 1 32 32 H 1.08994 * 109.47027 * 300.00161 * 4 2 1 33 33 H 1.08994 * 109.46712 * 60.00216 * 4 2 1 34 34 H 1.08997 * 109.47254 * 180.02562 * 4 2 1 35 35 H 1.07996 * 119.97173 * 0.02562 * 6 5 2 36 36 H 1.08000 * 119.93956 * 179.70861 * 7 6 5 37 37 H 1.08008 * 119.97252 * 180.02562 * 8 7 6 38 38 H 1.08000 * 120.02770 * 179.97438 * 9 8 7 39 39 H 1.09003 * 111.00778 * 324.13488 * 14 12 11 40 40 H 1.08995 * 111.00535 * 87.99215 * 14 12 11 41 41 H 1.09003 * 110.49886 * 278.45427 * 15 14 12 42 42 H 1.09002 * 110.34734 * 156.05958 * 15 14 12 43 43 H 0.97003 * 120.00207 * 180.02562 * 20 19 17 44 44 H 1.09005 * 109.88290 * 120.70082 * 25 16 15 45 45 H 1.09004 * 109.88355 * 241.86846 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0322 -0.7104 1.2305 6 6 1.1349 -1.2415 2.1371 7 6 1.5950 -1.8879 3.2692 8 6 2.9539 -2.0105 3.4940 9 6 3.8551 -1.4875 2.5872 10 6 3.3959 -0.8380 1.4504 11 8 4.2805 -0.3231 0.5564 12 6 5.6648 -0.3811 0.9066 13 1 5.8001 -0.1909 1.9713 14 6 6.4916 0.6226 0.0602 15 6 7.8929 -0.0426 0.0741 16 7 7.6217 -1.4895 -0.0057 17 6 8.4871 -2.4388 -0.4800 18 1 8.1945 -3.4783 -0.4924 19 6 9.7383 -2.0643 -0.9503 20 7 10.0948 -0.7975 -0.9352 21 14 10.9159 -3.3584 -1.6046 22 1 10.2933 -4.0564 -2.7580 23 1 12.1753 -2.7051 -2.0431 24 1 11.2151 -4.3423 -0.5333 25 6 6.2705 -1.7453 0.5143 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6767 -1.7489 -1.2491 33 1 1.6767 -0.2075 -2.1391 34 1 3.1300 -0.7217 -1.2490 35 1 0.0731 -1.1476 1.9634 36 1 0.8919 -2.2981 3.9789 37 1 3.3110 -2.5163 4.3790 38 1 4.9163 -1.5832 2.7635 39 1 6.0995 0.6941 -0.9543 40 1 6.5216 1.6028 0.5358 41 1 8.4188 0.1943 0.9991 42 1 8.4753 0.2822 -0.7881 43 1 10.9690 -0.5357 -1.2642 44 1 5.6592 -2.2144 -0.2567 45 1 6.3265 -2.3916 1.3903 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227470092.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:41 Heat of formation + Delta-G solvation = 4.798206 kcal Electronic energy + Delta-G solvation = -23884.441273 eV Core-core repulsion = 20674.637952 eV Total energy + Delta-G solvation = -3209.803322 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.47138 -38.17733 -36.20588 -36.01300 -32.32898 -30.27981 -29.74813 -28.95333 -27.64599 -27.05702 -27.01157 -24.56785 -22.90292 -22.12902 -20.36379 -20.08914 -19.17450 -17.74825 -16.99457 -15.80899 -15.69268 -15.15644 -14.74003 -14.41365 -14.25273 -14.09591 -13.76378 -13.66745 -13.43822 -12.82346 -12.47968 -12.22193 -12.10269 -11.90567 -11.85451 -11.77068 -11.54652 -11.36927 -11.30943 -11.02426 -10.84499 -10.81257 -10.67938 -10.52191 -10.24907 -10.18986 -10.03515 -9.80589 -9.61520 -8.72809 -8.69462 -7.89047 -6.89887 -5.69582 -3.12025 1.44660 1.60212 3.39183 3.42969 3.44240 3.52647 3.88467 4.46407 4.65736 4.83313 5.06883 5.08447 5.13335 5.20223 5.29656 5.32970 5.44898 5.48523 5.54641 5.61905 5.65208 5.67252 5.73778 5.82598 5.88191 5.93268 6.02241 6.08461 6.12002 6.21969 6.25920 6.39744 6.41066 6.47915 6.50906 6.53410 6.57343 6.63910 6.66802 6.74244 7.01995 7.41374 7.57451 7.74287 7.82582 8.30224 9.16921 9.77321 10.40580 11.34422 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023273 B = 0.004072 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.806321 B = 6874.801736 C = 7307.935568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.016 4.016 3 C -0.141 4.141 4 C -0.142 4.142 5 C -0.109 4.109 6 C -0.089 4.089 7 C -0.166 4.166 8 C -0.086 4.086 9 C -0.206 4.206 10 C 0.145 3.855 11 O -0.295 6.295 12 C 0.068 3.932 13 H 0.074 0.926 14 C -0.133 4.133 15 C 0.152 3.848 16 N -0.600 5.600 17 C -0.224 4.224 18 H 0.077 0.923 19 C -0.009 4.009 20 N -0.923 5.923 21 Si 0.916 3.084 22 H -0.284 1.284 23 H -0.289 1.289 24 H -0.285 1.285 25 C 0.119 3.881 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.127 0.873 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.131 0.869 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.015 0.985 42 H 0.114 0.886 43 H 0.254 0.746 44 H 0.034 0.966 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.963 2.869 5.314 18.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.016 4.016 3 C -0.198 4.198 4 C -0.199 4.199 5 C -0.110 4.110 6 C -0.107 4.107 7 C -0.184 4.184 8 C -0.104 4.104 9 C -0.225 4.225 10 C 0.099 3.901 11 O -0.208 6.208 12 C 0.011 3.989 13 H 0.092 0.908 14 C -0.172 4.172 15 C 0.027 3.973 16 N -0.328 5.328 17 C -0.352 4.352 18 H 0.095 0.905 19 C -0.205 4.205 20 N -0.572 5.572 21 Si 0.747 3.253 22 H -0.211 1.211 23 H -0.215 1.215 24 H -0.212 1.212 25 C -0.007 4.007 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.145 0.855 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.149 0.851 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.033 0.967 42 H 0.132 0.868 43 H 0.064 0.936 44 H 0.052 0.948 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -17.765 2.949 5.022 18.696 hybrid contribution 0.763 -0.901 0.092 1.185 sum -17.002 2.048 5.114 17.872 Atomic orbital electron populations 1.21974 0.94847 1.01570 1.01581 1.19284 0.94630 0.95181 0.92471 1.21895 1.02929 0.94191 1.00803 1.21909 1.03095 0.99322 0.95583 1.19230 0.89990 1.03493 0.98306 1.20942 0.99191 0.97055 0.93523 1.20951 0.95464 1.03295 0.98717 1.20908 0.93057 0.98051 0.98410 1.21426 1.00897 1.04014 0.96153 1.18889 0.89430 0.92846 0.88906 1.86197 1.16625 1.75361 1.42572 1.23652 0.77577 0.98417 0.99222 0.90827 1.23208 0.97842 0.96672 0.99476 1.22059 0.90224 0.82578 1.02412 1.44368 1.11328 1.03816 1.73256 1.19037 0.94163 0.88309 1.33727 0.90473 1.24783 0.97572 0.96575 1.01531 1.69736 1.20854 1.14055 1.52527 0.86126 0.80193 0.80227 0.78797 1.21083 1.21484 1.21171 1.21731 0.88587 0.93623 0.96795 0.92590 0.92547 0.92536 0.90776 0.92881 0.93308 0.93212 0.92912 0.90611 0.85496 0.86478 0.86260 0.85108 0.90806 0.91631 0.96658 0.86797 0.93555 0.94761 0.95822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 7.13 37.15 0.26 -1.12 16 2 C -0.02 -0.19 0.75 -155.66 -0.12 -0.31 16 3 C -0.14 -1.72 8.26 37.16 0.31 -1.41 16 4 C -0.14 -1.85 8.26 37.16 0.31 -1.55 16 5 C -0.11 -1.49 4.77 -104.47 -0.50 -1.99 16 6 C -0.09 -1.07 8.97 -39.60 -0.36 -1.42 16 7 C -0.17 -1.94 10.04 -39.56 -0.40 -2.33 16 8 C -0.09 -1.10 10.04 -39.61 -0.40 -1.49 16 9 C -0.21 -3.06 8.77 -39.44 -0.35 -3.41 16 10 C 0.15 2.25 6.22 -39.22 -0.24 2.00 16 11 O -0.29 -4.94 5.55 -19.43 -0.11 -5.05 16 12 C 0.07 1.23 2.76 -24.89 -0.07 1.16 16 13 H 0.07 1.27 6.58 -51.93 -0.34 0.93 16 14 C -0.13 -2.55 6.83 -24.46 -0.17 -2.71 16 15 C 0.15 3.65 5.91 -2.41 -0.01 3.63 16 16 N -0.60 -15.46 3.39 -169.93 -0.58 -16.04 16 17 C -0.22 -6.28 10.27 -15.06 -0.15 -6.43 16 18 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 19 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 20 N -0.92 -26.62 10.08 55.49 0.56 -26.06 16 21 Si 0.92 22.00 29.55 -169.99 -5.02 16.98 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.12 2.56 6.51 -3.06 -0.02 2.54 16 26 H 0.06 0.50 7.53 -51.93 -0.39 0.11 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.52 7.50 -51.93 -0.39 0.13 16 29 H 0.07 1.04 6.14 -51.93 -0.32 0.72 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 1.17 6.14 -51.93 -0.32 0.85 16 35 H 0.13 1.23 5.90 -52.49 -0.31 0.92 16 36 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 37 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 38 H 0.13 1.99 5.31 -52.49 -0.28 1.71 16 39 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.11 3.06 5.85 -51.93 -0.30 2.76 16 43 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.03 0.77 8.06 -51.93 -0.42 0.35 16 45 H 0.02 0.51 7.42 -51.93 -0.39 0.12 16 LS Contribution 344.70 15.07 5.19 5.19 Total: -1.00 -29.30 344.70 -9.18 -38.48 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -7.23 Total: 1.68 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -2.00 Total: -15.19 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: -0.02 Total: -42.10 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.11 Total: -5.05 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.30 -9.18 -38.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227470092.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.281 kcal (2) G-P(sol) polarization free energy of solvation -29.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds