Wall clock time and date at job start Tue Mar 31 2020 06:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47345 * 2 1 4 4 C 1.53003 * 109.47274 * 239.99603 * 2 1 3 5 5 C 1.50707 * 109.46843 * 119.99941 * 2 1 3 6 6 C 1.38169 * 120.03003 * 0.31633 * 5 2 1 7 7 C 1.38244 * 120.05434 * 180.29739 * 6 5 2 8 8 C 1.38281 * 120.11053 * 359.68400 * 7 6 5 9 9 C 1.38124 * 120.05958 * 359.97438 * 8 7 6 10 10 C 1.38715 * 120.02796 * 179.97438 * 5 2 1 11 11 O 1.35901 * 120.05017 * 359.97438 * 10 5 2 12 12 C 1.42908 * 116.99396 * 174.35120 * 11 10 5 13 13 H 1.08999 * 110.64520 * 321.84152 * 12 11 10 14 14 C 1.55158 * 110.86895 * 198.59664 * 12 11 10 15 15 C 1.55129 * 101.48470 * 205.89942 * 14 12 11 16 16 N 1.47425 * 104.72497 * 37.29521 * 15 14 12 17 17 C 1.36934 * 125.65378 * 155.81791 * 16 15 14 18 18 H 1.07994 * 120.00094 * 179.69417 * 17 16 15 19 19 C 1.38809 * 119.99650 * 359.41775 * 17 16 15 20 20 N 1.31617 * 119.99959 * 0.27597 * 19 17 16 21 21 Si 1.86801 * 119.99922 * 180.27560 * 19 17 16 22 22 H 1.48503 * 109.47231 * 60.00215 * 21 19 17 23 23 H 1.48500 * 109.47054 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47229 * 299.99644 * 21 19 17 25 25 C 1.47025 * 108.70146 * 335.55417 * 16 15 14 26 26 H 1.08997 * 109.47638 * 300.00266 * 1 2 3 27 27 H 1.09004 * 109.47121 * 60.00064 * 1 2 3 28 28 H 1.09003 * 109.47511 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47233 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47067 * 300.00045 * 3 2 1 31 31 H 1.09001 * 109.46816 * 59.99798 * 3 2 1 32 32 H 1.08994 * 109.47027 * 300.00161 * 4 2 1 33 33 H 1.08994 * 109.46712 * 60.00216 * 4 2 1 34 34 H 1.08997 * 109.47254 * 180.02562 * 4 2 1 35 35 H 1.07996 * 119.97173 * 0.02562 * 6 5 2 36 36 H 1.08000 * 119.93956 * 179.70861 * 7 6 5 37 37 H 1.08008 * 119.97252 * 180.02562 * 8 7 6 38 38 H 1.08000 * 120.02770 * 179.97438 * 9 8 7 39 39 H 1.09003 * 111.00778 * 324.13488 * 14 12 11 40 40 H 1.08995 * 111.00535 * 87.99215 * 14 12 11 41 41 H 1.09003 * 110.49886 * 278.45427 * 15 14 12 42 42 H 1.09002 * 110.34734 * 156.05958 * 15 14 12 43 43 H 0.97003 * 120.00207 * 180.02562 * 20 19 17 44 44 H 1.09005 * 109.88290 * 120.70082 * 25 16 15 45 45 H 1.09004 * 109.88355 * 241.86846 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0322 -0.7104 1.2305 6 6 1.1349 -1.2415 2.1371 7 6 1.5950 -1.8879 3.2692 8 6 2.9539 -2.0105 3.4940 9 6 3.8551 -1.4875 2.5872 10 6 3.3959 -0.8380 1.4504 11 8 4.2805 -0.3231 0.5564 12 6 5.6648 -0.3811 0.9066 13 1 5.8001 -0.1909 1.9713 14 6 6.4916 0.6226 0.0602 15 6 7.8929 -0.0426 0.0741 16 7 7.6217 -1.4895 -0.0057 17 6 8.4871 -2.4388 -0.4800 18 1 8.1945 -3.4783 -0.4924 19 6 9.7383 -2.0643 -0.9503 20 7 10.0948 -0.7975 -0.9352 21 14 10.9159 -3.3584 -1.6046 22 1 10.2933 -4.0564 -2.7580 23 1 12.1753 -2.7051 -2.0431 24 1 11.2151 -4.3423 -0.5333 25 6 6.2705 -1.7453 0.5143 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6767 -1.7489 -1.2491 33 1 1.6767 -0.2075 -2.1391 34 1 3.1300 -0.7217 -1.2490 35 1 0.0731 -1.1476 1.9634 36 1 0.8919 -2.2981 3.9789 37 1 3.3110 -2.5163 4.3790 38 1 4.9163 -1.5832 2.7635 39 1 6.0995 0.6941 -0.9543 40 1 6.5216 1.6028 0.5358 41 1 8.4188 0.1943 0.9991 42 1 8.4753 0.2822 -0.7881 43 1 10.9690 -0.5357 -1.2642 44 1 5.6592 -2.2144 -0.2567 45 1 6.3265 -2.3916 1.3903 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227470092.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:40 Heat of formation + Delta-G solvation = -9.161480 kcal Electronic energy + Delta-G solvation = -23885.046611 eV Core-core repulsion = 20674.637952 eV Total energy + Delta-G solvation = -3210.408659 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.60979 -39.54993 -37.64887 -37.11132 -34.30539 -31.47310 -31.19001 -30.32645 -29.10661 -28.10589 -28.03592 -26.51803 -23.93887 -23.34745 -22.17956 -21.53488 -20.23466 -19.04041 -18.89121 -17.12793 -16.77900 -16.64911 -16.54848 -15.56518 -15.52485 -15.16802 -15.13306 -14.94475 -14.46808 -14.31096 -14.18297 -13.66719 -13.43394 -13.16071 -13.00298 -12.94408 -12.84249 -12.66933 -12.64656 -12.44248 -12.31150 -12.23759 -12.08341 -11.86404 -11.76752 -11.64237 -11.49803 -11.42411 -11.15547 -10.79064 -9.73170 -9.01356 -8.94880 -7.82038 -5.28016 0.44122 0.57041 1.45429 1.48707 1.55251 2.21047 2.48281 2.87135 3.28452 3.60101 3.66072 3.73125 3.89168 3.92471 4.01775 4.14512 4.20572 4.22776 4.35308 4.53167 4.56369 4.57581 4.59885 4.78650 4.83460 4.84444 4.85534 4.94300 4.97805 5.01232 5.01831 5.11999 5.14029 5.21594 5.34900 5.39998 5.42718 5.51067 5.53642 5.57895 5.66785 5.71083 5.75113 5.98667 6.24550 6.55669 7.05001 7.70070 8.33222 9.19666 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023273 B = 0.004072 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.806321 B = 6874.801736 C = 7307.935568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.017 4.017 3 C -0.139 4.139 4 C -0.139 4.139 5 C -0.117 4.117 6 C -0.088 4.088 7 C -0.158 4.158 8 C -0.093 4.093 9 C -0.224 4.224 10 C 0.115 3.885 11 O -0.297 6.297 12 C 0.087 3.913 13 H 0.085 0.915 14 C -0.118 4.118 15 C 0.155 3.845 16 N -0.622 5.622 17 C -0.247 4.247 18 H 0.077 0.923 19 C -0.060 4.060 20 N -0.946 5.946 21 Si 0.983 3.017 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.278 1.278 25 C 0.121 3.879 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.045 0.955 35 H 0.156 0.844 36 H 0.149 0.851 37 H 0.139 0.861 38 H 0.118 0.882 39 H 0.070 0.930 40 H 0.095 0.905 41 H -0.001 1.001 42 H 0.083 0.917 43 H 0.250 0.750 44 H 0.022 0.978 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.549 2.564 6.144 21.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.017 4.017 3 C -0.196 4.196 4 C -0.197 4.197 5 C -0.118 4.118 6 C -0.106 4.106 7 C -0.176 4.176 8 C -0.111 4.111 9 C -0.243 4.243 10 C 0.070 3.930 11 O -0.210 6.210 12 C 0.030 3.970 13 H 0.103 0.897 14 C -0.157 4.157 15 C 0.030 3.970 16 N -0.349 5.349 17 C -0.376 4.376 18 H 0.095 0.905 19 C -0.253 4.253 20 N -0.595 5.595 21 Si 0.810 3.190 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.204 1.204 25 C -0.005 4.005 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.173 0.827 36 H 0.167 0.833 37 H 0.157 0.843 38 H 0.136 0.864 39 H 0.088 0.912 40 H 0.113 0.887 41 H 0.017 0.983 42 H 0.101 0.899 43 H 0.060 0.940 44 H 0.040 0.960 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -20.385 2.641 5.865 21.376 hybrid contribution 1.468 -0.846 -0.117 1.699 sum -18.917 1.795 5.749 19.852 Atomic orbital electron populations 1.21940 0.92437 1.02418 1.02730 1.19339 0.96513 0.94621 0.91253 1.21862 1.01404 0.94612 1.01698 1.21872 1.01091 0.99732 0.96967 1.19535 0.89389 1.03594 0.99234 1.21326 1.00338 0.95974 0.92930 1.21366 0.95438 1.01922 0.98912 1.21203 0.93524 0.97753 0.98591 1.21475 1.00804 1.05090 0.96909 1.19200 0.90026 0.94444 0.89347 1.86194 1.15591 1.75962 1.43262 1.23270 0.78667 0.95676 0.99378 0.89702 1.22993 0.94881 0.97821 0.99975 1.21837 0.92649 0.82440 1.00075 1.44650 1.12530 1.04265 1.73477 1.19386 0.95085 0.88986 1.34145 0.90482 1.25628 0.99102 0.98651 1.01915 1.69981 1.20875 1.15642 1.53042 0.85101 0.77785 0.77835 0.78277 1.20364 1.21481 1.20382 1.21792 0.86794 0.95807 0.96097 0.91380 0.91549 0.91804 0.93124 0.91683 0.92670 0.93303 0.91628 0.93641 0.82677 0.83301 0.84332 0.86398 0.91173 0.88693 0.98350 0.89865 0.93997 0.96026 0.95664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 7.13 71.98 0.51 -1.70 16 2 C -0.02 -0.39 0.75 -52.93 -0.04 -0.43 16 3 C -0.14 -3.18 8.26 71.98 0.59 -2.59 16 4 C -0.14 -3.54 8.26 71.98 0.59 -2.95 16 5 C -0.12 -2.98 4.77 -19.76 -0.09 -3.08 16 6 C -0.09 -1.82 8.97 22.25 0.20 -1.62 16 7 C -0.16 -3.15 10.04 22.28 0.22 -2.92 16 8 C -0.09 -2.17 10.04 22.25 0.22 -1.95 16 9 C -0.22 -6.54 8.77 22.36 0.20 -6.34 16 10 C 0.11 3.50 6.22 22.51 0.14 3.64 16 11 O -0.30 -10.07 5.55 -92.43 -0.51 -10.58 16 12 C 0.09 3.21 2.76 31.78 0.09 3.30 16 13 H 0.09 2.94 6.58 -2.39 -0.02 2.93 16 14 C -0.12 -4.59 6.83 32.06 0.22 -4.37 16 15 C 0.15 7.72 5.91 86.93 0.51 8.24 16 16 N -0.62 -33.19 3.39 -691.52 -2.35 -35.54 16 17 C -0.25 -14.25 10.27 84.03 0.86 -13.39 16 18 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 19 C -0.06 -3.43 5.49 84.86 0.47 -2.97 16 20 N -0.95 -56.22 10.08 21.65 0.22 -56.01 16 21 Si 0.98 45.89 29.55 68.60 2.03 47.91 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 24 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 25 C 0.12 5.37 6.51 86.73 0.56 5.94 16 26 H 0.07 0.94 7.53 -2.39 -0.02 0.92 16 27 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 28 H 0.06 0.94 7.50 -2.39 -0.02 0.92 16 29 H 0.05 1.40 6.14 -2.39 -0.01 1.39 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.04 1.43 6.14 -2.39 -0.01 1.41 16 35 H 0.16 2.29 5.90 -2.91 -0.02 2.27 16 36 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 37 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 38 H 0.12 3.65 5.31 -2.91 -0.02 3.63 16 39 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 40 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 41 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 42 H 0.08 4.69 5.85 -2.39 -0.01 4.67 16 43 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 44 H 0.02 1.01 8.06 -2.38 -0.02 0.99 16 45 H 0.03 1.11 7.42 -2.38 -0.02 1.09 16 Total: -1.00 -64.99 344.70 5.61 -59.38 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.96 Total: 18.00 kcal Atomic # 6 Polarization: -28.44 SS G_CDS: 5.27 Total: -23.18 kcal Atomic # 7 Polarization: -89.41 SS G_CDS: -2.13 Total: -91.54 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: -0.51 Total: -10.58 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Total: -64.99 5.61 -59.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227470092.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.220 kcal (2) G-P(sol) polarization free energy of solvation -64.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds