Wall clock time and date at job start Tue Mar 31 2020 06:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47336 * 2 1 4 4 C 1.53007 * 109.47079 * 240.00298 * 2 1 3 5 5 C 1.50701 * 109.47182 * 120.00760 * 2 1 3 6 6 C 1.38167 * 120.02717 * 0.27033 * 5 2 1 7 7 C 1.38241 * 120.05266 * 180.25866 * 6 5 2 8 8 C 1.38284 * 120.11623 * 359.76834 * 7 6 5 9 9 C 1.38126 * 120.05350 * 359.95282 * 8 7 6 10 10 C 1.38710 * 120.02745 * 180.02562 * 5 2 1 11 11 O 1.35900 * 120.05650 * 359.97438 * 10 5 2 12 12 C 1.42902 * 116.99868 * 182.54908 * 11 10 5 13 13 H 1.09000 * 110.64417 * 33.35663 * 12 11 10 14 14 C 1.55154 * 110.71768 * 156.50424 * 12 11 10 15 15 C 1.54914 * 101.58191 * 154.04562 * 14 12 11 16 16 N 1.47430 * 104.82962 * 322.98364 * 15 14 12 17 17 C 1.36935 * 125.65013 * 204.09197 * 16 15 14 18 18 H 1.07993 * 120.00063 * 163.76090 * 17 16 15 19 19 C 1.38814 * 120.00018 * 343.76614 * 17 16 15 20 20 N 1.31625 * 119.99551 * 331.96750 * 19 17 16 21 21 Si 1.86791 * 120.00261 * 151.96877 * 19 17 16 22 22 H 1.48501 * 109.47229 * 179.97438 * 21 19 17 23 23 H 1.48499 * 109.47071 * 299.99624 * 21 19 17 24 24 H 1.48506 * 109.47353 * 59.99679 * 21 19 17 25 25 C 1.47022 * 108.69874 * 24.36218 * 16 15 14 26 26 H 1.09000 * 109.47163 * 299.99924 * 1 2 3 27 27 H 1.08998 * 109.46937 * 59.99854 * 1 2 3 28 28 H 1.08999 * 109.47191 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47047 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47349 * 300.00497 * 3 2 1 31 31 H 1.09001 * 109.46639 * 60.00394 * 3 2 1 32 32 H 1.08998 * 109.46888 * 300.00351 * 4 2 1 33 33 H 1.08996 * 109.46867 * 59.99955 * 4 2 1 34 34 H 1.09000 * 109.47275 * 179.97438 * 4 2 1 35 35 H 1.08001 * 119.97238 * 0.02562 * 6 5 2 36 36 H 1.08000 * 119.94393 * 179.74659 * 7 6 5 37 37 H 1.08005 * 119.97399 * 179.97438 * 8 7 6 38 38 H 1.07998 * 120.02838 * 180.02562 * 9 8 7 39 39 H 1.08993 * 111.00808 * 35.97022 * 14 12 11 40 40 H 1.08999 * 111.00342 * 272.11374 * 14 12 11 41 41 H 1.09001 * 110.36319 * 204.15599 * 15 14 12 42 42 H 1.08991 * 110.37357 * 81.82270 * 15 14 12 43 43 H 0.96998 * 120.00055 * 354.73459 * 20 19 17 44 44 H 1.08999 * 109.88371 * 118.13190 * 25 16 15 45 45 H 1.09008 * 109.87581 * 239.29068 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7106 1.2304 6 6 1.1350 -1.2409 2.1373 7 6 1.5952 -1.8881 3.2688 8 6 2.9541 -2.0108 3.4937 9 6 3.8553 -1.4874 2.5871 10 6 3.3960 -0.8372 1.4507 11 8 4.2806 -0.3212 0.5573 12 6 5.6685 -0.5376 0.8198 13 1 5.8222 -1.5017 1.3046 14 6 6.4960 -0.4432 -0.4892 15 6 7.8863 -0.0251 0.0511 16 7 7.5967 0.8952 1.1659 17 6 8.4423 1.8602 1.6444 18 1 8.0597 2.6490 2.2750 19 6 9.7912 1.8246 1.3188 20 7 10.3745 0.6743 1.0557 21 14 10.7786 3.4089 1.2542 22 1 12.1842 3.1015 0.8865 23 1 10.1887 4.3188 0.2397 24 1 10.7482 4.0659 2.5857 25 6 6.2523 0.6009 1.6830 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9562 0.8901 32 1 1.6766 -1.7488 -1.2494 33 1 1.6767 -0.2073 -2.1392 34 1 3.1300 -0.7208 -1.2496 35 1 0.0732 -1.1464 1.9640 36 1 0.8922 -2.2984 3.9787 37 1 3.3112 -2.5166 4.3787 38 1 4.9165 -1.5838 2.7629 39 1 6.0899 0.3190 -1.1541 40 1 6.5462 -1.4099 -0.9902 41 1 8.4566 0.4863 -0.7244 42 1 8.4315 -0.8974 0.4112 43 1 9.8826 -0.1547 1.1633 44 1 6.3166 0.2840 2.7239 45 1 5.6217 1.4863 1.6012 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227470094.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:43 Heat of formation + Delta-G solvation = 0.647924 kcal Electronic energy + Delta-G solvation = -23900.101213 eV Core-core repulsion = 20690.117922 eV Total energy + Delta-G solvation = -3209.983291 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.55180 -38.32264 -36.35572 -36.16749 -32.51746 -30.33337 -29.74052 -29.03472 -27.73614 -27.13821 -27.10002 -24.38425 -22.99836 -22.25108 -20.43482 -20.21760 -19.25195 -17.87724 -17.58091 -15.89853 -15.80794 -15.28876 -14.53837 -14.45069 -14.20099 -14.14167 -13.82175 -13.69146 -13.50276 -13.18503 -12.81849 -12.34664 -12.22104 -12.14810 -11.94759 -11.90410 -11.60012 -11.44625 -11.37032 -10.95844 -10.89573 -10.74031 -10.63207 -10.56093 -10.39946 -10.26792 -10.02999 -9.96821 -9.55140 -8.78788 -8.45161 -7.95548 -6.99276 -6.14103 -3.17882 1.38653 1.53888 3.39229 3.49399 3.54053 3.71417 3.82148 4.56719 4.60079 4.77365 4.97989 5.01796 5.04029 5.10434 5.15004 5.21855 5.33448 5.40062 5.42972 5.49095 5.56474 5.61057 5.68983 5.72743 5.83001 5.88510 5.96564 5.98152 6.03229 6.06311 6.10463 6.20810 6.25810 6.33956 6.44404 6.46717 6.49143 6.57611 6.59656 6.66884 6.87618 6.94547 6.94910 7.68177 7.75818 8.44787 8.97307 9.77546 10.30642 11.19301 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023311 B = 0.004075 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.835704 B = 6869.020175 C = 7291.152618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.016 4.016 3 C -0.142 4.142 4 C -0.141 4.141 5 C -0.109 4.109 6 C -0.088 4.088 7 C -0.165 4.165 8 C -0.085 4.085 9 C -0.207 4.207 10 C 0.144 3.856 11 O -0.294 6.294 12 C 0.067 3.933 13 H 0.077 0.923 14 C -0.127 4.127 15 C 0.145 3.855 16 N -0.599 5.599 17 C -0.338 4.338 18 H 0.066 0.934 19 C -0.024 4.024 20 N -0.916 5.916 21 Si 1.066 2.934 22 H -0.285 1.285 23 H -0.293 1.293 24 H -0.293 1.293 25 C 0.120 3.880 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.128 0.872 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.130 0.870 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.059 0.941 42 H 0.029 0.971 43 H 0.268 0.732 44 H 0.026 0.974 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.124 -5.359 -1.100 19.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.016 4.016 3 C -0.199 4.199 4 C -0.198 4.198 5 C -0.109 4.109 6 C -0.106 4.106 7 C -0.183 4.183 8 C -0.103 4.103 9 C -0.226 4.226 10 C 0.099 3.901 11 O -0.206 6.206 12 C 0.011 3.989 13 H 0.095 0.905 14 C -0.165 4.165 15 C 0.019 3.981 16 N -0.327 5.327 17 C -0.465 4.465 18 H 0.083 0.917 19 C -0.226 4.226 20 N -0.557 5.557 21 Si 0.895 3.105 22 H -0.210 1.210 23 H -0.220 1.220 24 H -0.220 1.220 25 C -0.006 4.006 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.146 0.854 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.148 0.852 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.047 0.953 43 H 0.080 0.920 44 H 0.044 0.956 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -17.591 -4.517 -1.593 18.232 hybrid contribution -1.374 -0.817 0.838 1.805 sum -18.966 -5.334 -0.755 19.716 Atomic orbital electron populations 1.21975 0.94773 1.01526 1.01712 1.19290 0.94701 0.95267 0.92332 1.21908 1.03026 0.94042 1.00938 1.21898 1.02826 0.99279 0.95797 1.19221 0.89916 1.03417 0.98368 1.20953 0.99234 0.96969 0.93480 1.20965 0.95464 1.03210 0.98666 1.20912 0.93058 0.98068 0.98291 1.21383 1.00856 1.04309 0.96051 1.18877 0.89421 0.92797 0.89051 1.86183 1.16147 1.72198 1.46096 1.23599 0.77807 0.98954 0.98558 0.90497 1.22948 0.96570 1.01581 0.95397 1.21560 0.92148 0.93498 0.90858 1.44437 1.13584 1.40276 1.34430 1.19742 0.90494 1.02691 1.33617 0.91652 1.25776 0.93427 1.03491 0.99866 1.70807 1.37762 0.97824 1.49344 0.83512 0.76068 0.74667 0.76248 1.21020 1.22028 1.21974 1.21716 0.88858 0.95020 0.94968 0.92500 0.92508 0.92561 0.90696 0.92866 0.93170 0.93262 0.92850 0.90868 0.85408 0.86386 0.86190 0.85187 0.90386 0.91127 0.92316 0.95329 0.92048 0.95636 0.94583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 7.13 37.16 0.27 -1.08 16 2 C -0.02 -0.19 0.75 -155.66 -0.12 -0.31 16 3 C -0.14 -1.82 8.26 37.16 0.31 -1.51 16 4 C -0.14 -1.67 8.26 37.16 0.31 -1.37 16 5 C -0.11 -1.45 4.77 -104.47 -0.50 -1.95 16 6 C -0.09 -1.04 8.97 -39.61 -0.36 -1.39 16 7 C -0.16 -1.89 10.04 -39.56 -0.40 -2.29 16 8 C -0.09 -1.07 10.04 -39.61 -0.40 -1.47 16 9 C -0.21 -3.03 8.95 -39.43 -0.35 -3.39 16 10 C 0.14 2.19 6.27 -39.22 -0.25 1.95 16 11 O -0.29 -4.80 5.55 -19.43 -0.11 -4.90 16 12 C 0.07 1.19 2.74 -24.89 -0.07 1.13 16 13 H 0.08 1.30 6.14 -51.93 -0.32 0.98 16 14 C -0.13 -2.29 6.81 -24.58 -0.17 -2.46 16 15 C 0.14 3.34 5.28 -2.52 -0.01 3.32 16 16 N -0.60 -15.37 3.30 -170.06 -0.56 -15.93 16 17 C -0.34 -9.66 10.02 -15.06 -0.15 -9.81 16 18 H 0.07 1.87 7.97 -52.49 -0.42 1.46 16 19 C -0.02 -0.69 5.08 -17.43 -0.09 -0.77 16 20 N -0.92 -27.59 12.94 55.49 0.72 -26.87 16 21 Si 1.07 25.44 30.00 -169.99 -5.10 20.34 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 25 C 0.12 2.60 6.87 -3.06 -0.02 2.58 16 26 H 0.06 0.51 7.53 -51.93 -0.39 0.12 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.49 7.50 -51.93 -0.39 0.10 16 29 H 0.07 1.14 6.14 -51.93 -0.32 0.82 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 1.00 6.14 -51.93 -0.32 0.68 16 35 H 0.13 1.20 5.90 -52.49 -0.31 0.89 16 36 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 38 H 0.13 1.95 5.71 -52.49 -0.30 1.65 16 39 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.06 1.47 7.92 -51.93 -0.41 1.06 16 42 H 0.03 0.69 6.80 -51.93 -0.35 0.34 16 43 H 0.27 8.05 5.99 -40.82 -0.24 7.80 16 44 H 0.03 0.56 7.95 -51.93 -0.41 0.15 16 45 H 0.04 0.81 8.06 -51.92 -0.42 0.39 16 LS Contribution 346.20 15.07 5.22 5.22 Total: -1.00 -30.75 346.20 -9.03 -39.78 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -7.20 Total: 1.18 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -1.99 Total: -18.82 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: 0.16 Total: -42.80 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -0.11 Total: -4.90 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -5.10 Total: 20.34 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.75 -9.03 -39.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227470094.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.433 kcal (2) G-P(sol) polarization free energy of solvation -30.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds