Wall clock time and date at job start Tue Mar 31 2020 06:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47336 * 2 1 4 4 C 1.53007 * 109.47079 * 240.00298 * 2 1 3 5 5 C 1.50701 * 109.47182 * 120.00760 * 2 1 3 6 6 C 1.38167 * 120.02717 * 0.27033 * 5 2 1 7 7 C 1.38241 * 120.05266 * 180.25866 * 6 5 2 8 8 C 1.38284 * 120.11623 * 359.76834 * 7 6 5 9 9 C 1.38126 * 120.05350 * 359.95282 * 8 7 6 10 10 C 1.38710 * 120.02745 * 180.02562 * 5 2 1 11 11 O 1.35900 * 120.05650 * 359.97438 * 10 5 2 12 12 C 1.42902 * 116.99868 * 182.54908 * 11 10 5 13 13 H 1.09000 * 110.64417 * 33.35663 * 12 11 10 14 14 C 1.55154 * 110.71768 * 156.50424 * 12 11 10 15 15 C 1.54914 * 101.58191 * 154.04562 * 14 12 11 16 16 N 1.47430 * 104.82962 * 322.98364 * 15 14 12 17 17 C 1.36935 * 125.65013 * 204.09197 * 16 15 14 18 18 H 1.07993 * 120.00063 * 163.76090 * 17 16 15 19 19 C 1.38814 * 120.00018 * 343.76614 * 17 16 15 20 20 N 1.31625 * 119.99551 * 331.96750 * 19 17 16 21 21 Si 1.86791 * 120.00261 * 151.96877 * 19 17 16 22 22 H 1.48501 * 109.47229 * 179.97438 * 21 19 17 23 23 H 1.48499 * 109.47071 * 299.99624 * 21 19 17 24 24 H 1.48506 * 109.47353 * 59.99679 * 21 19 17 25 25 C 1.47022 * 108.69874 * 24.36218 * 16 15 14 26 26 H 1.09000 * 109.47163 * 299.99924 * 1 2 3 27 27 H 1.08998 * 109.46937 * 59.99854 * 1 2 3 28 28 H 1.08999 * 109.47191 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47047 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47349 * 300.00497 * 3 2 1 31 31 H 1.09001 * 109.46639 * 60.00394 * 3 2 1 32 32 H 1.08998 * 109.46888 * 300.00351 * 4 2 1 33 33 H 1.08996 * 109.46867 * 59.99955 * 4 2 1 34 34 H 1.09000 * 109.47275 * 179.97438 * 4 2 1 35 35 H 1.08001 * 119.97238 * 0.02562 * 6 5 2 36 36 H 1.08000 * 119.94393 * 179.74659 * 7 6 5 37 37 H 1.08005 * 119.97399 * 179.97438 * 8 7 6 38 38 H 1.07998 * 120.02838 * 180.02562 * 9 8 7 39 39 H 1.08993 * 111.00808 * 35.97022 * 14 12 11 40 40 H 1.08999 * 111.00342 * 272.11374 * 14 12 11 41 41 H 1.09001 * 110.36319 * 204.15599 * 15 14 12 42 42 H 1.08991 * 110.37357 * 81.82270 * 15 14 12 43 43 H 0.96998 * 120.00055 * 354.73459 * 20 19 17 44 44 H 1.08999 * 109.88371 * 118.13190 * 25 16 15 45 45 H 1.09008 * 109.87581 * 239.29068 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7106 1.2304 6 6 1.1350 -1.2409 2.1373 7 6 1.5952 -1.8881 3.2688 8 6 2.9541 -2.0108 3.4937 9 6 3.8553 -1.4874 2.5871 10 6 3.3960 -0.8372 1.4507 11 8 4.2806 -0.3212 0.5573 12 6 5.6685 -0.5376 0.8198 13 1 5.8222 -1.5017 1.3046 14 6 6.4960 -0.4432 -0.4892 15 6 7.8863 -0.0251 0.0511 16 7 7.5967 0.8952 1.1659 17 6 8.4423 1.8602 1.6444 18 1 8.0597 2.6490 2.2750 19 6 9.7912 1.8246 1.3188 20 7 10.3745 0.6743 1.0557 21 14 10.7786 3.4089 1.2542 22 1 12.1842 3.1015 0.8865 23 1 10.1887 4.3188 0.2397 24 1 10.7482 4.0659 2.5857 25 6 6.2523 0.6009 1.6830 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9562 0.8901 32 1 1.6766 -1.7488 -1.2494 33 1 1.6767 -0.2073 -2.1392 34 1 3.1300 -0.7208 -1.2496 35 1 0.0732 -1.1464 1.9640 36 1 0.8922 -2.2984 3.9787 37 1 3.3112 -2.5166 4.3787 38 1 4.9165 -1.5838 2.7629 39 1 6.0899 0.3190 -1.1541 40 1 6.5462 -1.4099 -0.9902 41 1 8.4566 0.4863 -0.7244 42 1 8.4315 -0.8974 0.4112 43 1 9.8826 -0.1547 1.1633 44 1 6.3166 0.2840 2.7239 45 1 5.6217 1.4863 1.6012 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227470094.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:43 Heat of formation + Delta-G solvation = -14.673701 kcal Electronic energy + Delta-G solvation = -23900.765609 eV Core-core repulsion = 20690.117922 eV Total energy + Delta-G solvation = -3210.647687 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.67966 -39.70950 -37.86307 -37.15208 -34.51168 -31.43866 -31.21030 -30.45033 -29.21095 -28.14970 -28.06567 -26.38999 -24.03133 -23.45400 -22.23883 -21.64852 -20.29732 -19.65688 -19.04791 -17.14024 -16.94597 -16.66136 -16.14127 -15.65179 -15.54040 -15.24591 -15.19207 -15.14973 -14.98333 -14.48586 -14.20456 -14.02046 -13.46004 -13.16978 -12.97989 -12.89708 -12.73365 -12.70878 -12.59918 -12.53776 -12.46563 -12.31274 -11.92013 -11.82510 -11.79138 -11.71847 -11.58452 -11.52897 -11.19505 -10.59000 -9.77971 -9.12485 -9.03702 -8.40609 -5.41608 0.39373 0.52071 1.55641 1.63562 1.83250 2.10911 2.60642 2.82156 3.11894 3.42305 3.52759 3.67598 3.75259 3.80795 3.90722 4.08441 4.17382 4.17978 4.27147 4.34363 4.41345 4.50701 4.53150 4.70595 4.71290 4.80192 4.80590 4.82294 4.90608 4.94295 4.95166 4.98300 5.08788 5.11008 5.16175 5.18262 5.31707 5.38853 5.48149 5.53303 5.58124 5.62838 5.69464 5.93310 6.24366 6.47759 6.80815 7.61670 8.17781 8.92307 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023311 B = 0.004075 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.835704 B = 6869.020175 C = 7291.152618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.017 4.017 3 C -0.140 4.140 4 C -0.138 4.138 5 C -0.115 4.115 6 C -0.087 4.087 7 C -0.157 4.157 8 C -0.093 4.093 9 C -0.226 4.226 10 C 0.114 3.886 11 O -0.294 6.294 12 C 0.087 3.913 13 H 0.088 0.912 14 C -0.110 4.110 15 C 0.148 3.852 16 N -0.621 5.621 17 C -0.355 4.355 18 H 0.056 0.944 19 C -0.071 4.071 20 N -0.940 5.940 21 Si 1.117 2.883 22 H -0.287 1.287 23 H -0.280 1.280 24 H -0.275 1.275 25 C 0.122 3.878 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.044 0.956 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.050 0.950 35 H 0.157 0.843 36 H 0.150 0.850 37 H 0.139 0.861 38 H 0.117 0.883 39 H 0.079 0.921 40 H 0.104 0.896 41 H 0.031 0.969 42 H 0.016 0.984 43 H 0.257 0.743 44 H 0.018 0.982 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.841 -5.715 -1.102 22.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.017 4.017 3 C -0.197 4.197 4 C -0.196 4.196 5 C -0.116 4.116 6 C -0.105 4.105 7 C -0.175 4.175 8 C -0.111 4.111 9 C -0.245 4.245 10 C 0.069 3.931 11 O -0.207 6.207 12 C 0.030 3.970 13 H 0.105 0.895 14 C -0.148 4.148 15 C 0.023 3.977 16 N -0.349 5.349 17 C -0.483 4.483 18 H 0.074 0.926 19 C -0.268 4.268 20 N -0.582 5.582 21 Si 0.941 3.059 22 H -0.213 1.213 23 H -0.207 1.207 24 H -0.200 1.200 25 C -0.004 4.004 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.174 0.826 36 H 0.168 0.832 37 H 0.156 0.844 38 H 0.135 0.865 39 H 0.098 0.902 40 H 0.122 0.878 41 H 0.050 0.950 42 H 0.034 0.966 43 H 0.067 0.933 44 H 0.035 0.965 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -20.353 -4.885 -1.588 20.991 hybrid contribution -0.650 -0.736 0.918 1.344 sum -21.003 -5.620 -0.670 21.753 Atomic orbital electron populations 1.21944 0.92395 1.02608 1.02614 1.19346 0.96562 0.94125 0.91706 1.21872 1.01054 0.95259 1.01488 1.21866 1.01375 0.99894 0.96421 1.19534 0.89297 1.03444 0.99339 1.21342 1.00402 0.95879 0.92855 1.21378 0.95397 1.01870 0.98880 1.21203 0.93566 0.97849 0.98442 1.21435 1.00724 1.05450 0.96861 1.19190 0.90046 0.94327 0.89503 1.86188 1.15069 1.72890 1.46536 1.23222 0.78978 0.97582 0.97268 0.89461 1.22804 0.93283 1.03192 0.95532 1.21481 0.94638 0.92126 0.89504 1.44687 1.14436 1.40324 1.35498 1.19989 0.91325 1.03315 1.33684 0.92573 1.27204 0.94709 1.05589 0.99259 1.70914 1.37954 0.98045 1.51300 0.82835 0.74437 0.71303 0.77338 1.21258 1.20664 1.20037 1.21751 0.87172 0.96128 0.95348 0.91825 0.91494 0.91332 0.93673 0.91545 0.93356 0.92626 0.91631 0.93100 0.82558 0.83222 0.84365 0.86549 0.90217 0.87806 0.95021 0.96622 0.93299 0.96452 0.95739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 7.13 71.98 0.51 -1.63 16 2 C -0.02 -0.38 0.75 -52.93 -0.04 -0.42 16 3 C -0.14 -3.46 8.26 71.98 0.59 -2.86 16 4 C -0.14 -3.06 8.26 71.98 0.59 -2.46 16 5 C -0.12 -2.89 4.77 -19.77 -0.09 -2.98 16 6 C -0.09 -1.76 8.97 22.25 0.20 -1.56 16 7 C -0.16 -3.09 10.04 22.28 0.22 -2.86 16 8 C -0.09 -2.16 10.04 22.25 0.22 -1.94 16 9 C -0.23 -6.55 8.95 22.37 0.20 -6.35 16 10 C 0.11 3.42 6.27 22.51 0.14 3.57 16 11 O -0.29 -9.68 5.55 -92.42 -0.51 -10.19 16 12 C 0.09 3.12 2.74 31.79 0.09 3.21 16 13 H 0.09 2.98 6.14 -2.39 -0.01 2.96 16 14 C -0.11 -4.00 6.81 31.99 0.22 -3.78 16 15 C 0.15 7.06 5.28 86.86 0.46 7.52 16 16 N -0.62 -33.12 3.30 -691.95 -2.28 -35.41 16 17 C -0.36 -20.96 10.02 84.03 0.84 -20.12 16 18 H 0.06 3.33 7.97 -2.91 -0.02 3.31 16 19 C -0.07 -4.17 5.08 84.86 0.43 -3.74 16 20 N -0.94 -58.19 12.94 21.65 0.28 -57.90 16 21 Si 1.12 51.95 30.00 68.60 2.06 54.00 16 22 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 24 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 25 C 0.12 5.47 6.87 86.73 0.60 6.06 16 26 H 0.06 0.91 7.53 -2.39 -0.02 0.89 16 27 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.07 0.91 7.50 -2.39 -0.02 0.89 16 29 H 0.04 1.38 6.14 -2.39 -0.01 1.37 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.05 1.35 6.14 -2.39 -0.01 1.34 16 35 H 0.16 2.23 5.90 -2.91 -0.02 2.21 16 36 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 38 H 0.12 3.59 5.71 -2.91 -0.02 3.57 16 39 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 40 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 41 H 0.03 1.65 7.92 -2.39 -0.02 1.63 16 42 H 0.02 0.80 6.80 -2.39 -0.02 0.78 16 43 H 0.26 16.03 5.99 -92.71 -0.56 15.48 16 44 H 0.02 0.81 7.95 -2.39 -0.02 0.79 16 45 H 0.02 1.15 8.06 -2.38 -0.02 1.13 16 Total: -1.00 -68.58 346.20 5.91 -62.67 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 1.17 Total: 17.17 kcal Atomic # 6 Polarization: -35.54 SS G_CDS: 5.19 Total: -30.35 kcal Atomic # 7 Polarization: -91.31 SS G_CDS: -2.00 Total: -93.31 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -0.51 Total: -10.19 kcal Atomic # 14 Polarization: 51.95 SS G_CDS: 2.06 Total: 54.00 kcal Total: -68.58 5.91 -62.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227470094.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.000 kcal (2) G-P(sol) polarization free energy of solvation -68.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds