Wall clock time and date at job start Tue Mar 31 2020 06:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46798 * 2 1 4 4 C 1.52999 * 109.47179 * 239.99971 * 2 1 3 5 5 C 1.50695 * 109.47013 * 119.99619 * 2 1 3 6 6 C 1.38167 * 120.03142 * 0.02815 * 5 2 1 7 7 C 1.38238 * 120.05442 * 179.97438 * 6 5 2 8 8 C 1.38289 * 120.11935 * 0.02562 * 7 6 5 9 9 C 1.38131 * 120.04973 * 359.68240 * 8 7 6 10 10 C 1.38720 * 120.02616 * 179.97438 * 5 2 1 11 11 O 1.35896 * 120.05480 * 0.02945 * 10 5 2 12 12 C 1.42903 * 117.00136 * 186.08045 * 11 10 5 13 13 C 1.53503 * 114.17182 * 156.73434 * 12 11 10 14 14 N 1.47475 * 87.93736 * 87.81458 * 13 12 11 15 15 C 1.46894 * 111.00698 * 138.70307 * 14 13 12 16 16 C 1.50698 * 109.47373 * 170.00008 * 15 14 13 17 17 H 1.07999 * 119.99943 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99801 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99868 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99957 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47025 * 269.99957 * 20 18 16 22 22 H 1.48499 * 109.47293 * 29.99948 * 20 18 16 23 23 H 1.48500 * 109.46777 * 150.00277 * 20 18 16 24 24 C 1.47481 * 87.83685 * 27.00711 * 14 13 12 25 25 H 1.09001 * 109.47234 * 300.00175 * 1 2 3 26 26 H 1.08999 * 109.47301 * 59.99995 * 1 2 3 27 27 H 1.09002 * 109.47039 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46810 * 179.97438 * 3 2 1 29 29 H 1.08993 * 109.46914 * 299.99733 * 3 2 1 30 30 H 1.08996 * 109.47079 * 60.00258 * 3 2 1 31 31 H 1.09000 * 109.46800 * 299.99626 * 4 2 1 32 32 H 1.08999 * 109.46977 * 59.99835 * 4 2 1 33 33 H 1.09000 * 109.46938 * 179.97438 * 4 2 1 34 34 H 1.07998 * 119.96907 * 359.97438 * 6 5 2 35 35 H 1.08007 * 119.94097 * 179.97438 * 7 6 5 36 36 H 1.07995 * 119.97985 * 179.97438 * 8 7 6 37 37 H 1.07999 * 120.02701 * 180.31828 * 9 8 7 38 38 H 1.08998 * 113.25153 * 23.77708 * 12 11 10 39 39 H 1.09010 * 113.47614 * 333.04456 * 13 12 11 40 40 H 1.09004 * 113.53176 * 202.59022 * 13 12 11 41 41 H 1.09007 * 109.46667 * 49.99708 * 15 14 13 42 42 H 1.08998 * 109.47076 * 290.00638 * 15 14 13 43 43 H 0.97002 * 119.99932 * 180.02562 * 19 18 16 44 44 H 1.09000 * 113.47582 * 87.75526 * 24 14 13 45 45 H 1.08994 * 113.47967 * 218.22913 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7103 1.2305 6 6 1.1350 -1.2361 2.1401 7 6 1.5952 -1.8882 3.2688 8 6 2.9542 -2.0158 3.4909 9 6 3.8553 -1.4972 2.5815 10 6 3.3960 -0.8378 1.4503 11 8 4.2806 -0.3220 0.5569 12 6 5.6640 -0.6050 0.7763 13 6 6.5331 -0.5088 -0.4853 14 7 6.7049 0.9264 -0.1929 15 6 8.0899 1.3512 -0.4361 16 6 8.1739 2.8543 -0.3667 17 1 7.2870 3.4358 -0.1627 18 6 9.3829 3.4870 -0.5646 19 7 9.4563 4.7987 -0.5035 20 14 10.9167 2.4811 -0.9180 21 1 11.5885 2.1369 0.3608 22 1 10.5377 1.2339 -1.6294 23 1 11.8433 3.2729 -1.7664 24 6 6.4930 0.6045 1.2307 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2491 32 1 1.6766 -0.2074 -2.1392 33 1 3.1300 -0.7208 -1.2494 34 1 0.0732 -1.1375 1.9692 35 1 0.8922 -2.2982 3.9788 36 1 3.3113 -2.5253 4.3736 37 1 4.9166 -1.6015 2.7527 38 1 5.8305 -1.5069 1.3653 39 1 5.9836 -0.7014 -1.4069 40 1 7.4597 -1.0792 -0.4201 41 1 8.4049 1.0149 -1.4240 42 1 8.7418 0.9155 0.3210 43 1 10.3067 5.2439 -0.6431 44 1 7.4087 0.3310 1.7550 45 1 5.9096 1.3553 1.7635 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227470547.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:23 Heat of formation + Delta-G solvation = 25.913725 kcal Electronic energy + Delta-G solvation = -23543.748579 eV Core-core repulsion = 20334.860895 eV Total energy + Delta-G solvation = -3208.887684 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.76715 -39.32781 -36.77039 -36.20001 -32.79361 -30.38054 -30.17997 -29.14864 -27.41619 -27.01253 -25.74247 -25.45456 -23.04885 -22.43283 -21.20363 -19.62835 -19.32479 -17.68632 -16.79921 -15.94307 -15.86607 -15.51829 -14.88687 -14.66426 -14.31491 -14.22225 -14.16042 -13.78594 -13.46015 -13.30135 -12.88146 -12.47946 -12.39448 -12.16181 -12.00652 -11.91004 -11.84989 -11.52721 -11.44029 -11.27108 -11.06680 -10.83094 -10.64254 -10.60530 -10.26652 -10.11407 -10.01737 -9.79754 -9.37204 -8.84949 -8.59750 -8.04444 -7.98858 -6.06329 -4.03876 1.32313 1.46702 3.20681 3.24384 3.32739 3.33264 3.75214 4.39031 4.56214 4.61994 4.65926 4.74963 4.93076 5.01115 5.09126 5.11089 5.21918 5.23564 5.40109 5.42323 5.58079 5.63260 5.70880 5.71584 5.76011 5.89670 5.91974 5.95818 5.97887 6.02702 6.07598 6.16060 6.17317 6.20512 6.39242 6.41891 6.44562 6.52692 6.56496 6.64343 6.70605 6.88377 7.27699 7.58884 7.66589 7.80007 8.61461 9.05191 9.54476 11.07115 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023093 B = 0.003848 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.172879 B = 7274.749001 C = 7823.676389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.017 4.017 3 C -0.143 4.143 4 C -0.140 4.140 5 C -0.103 4.103 6 C -0.087 4.087 7 C -0.164 4.164 8 C -0.087 4.087 9 C -0.210 4.210 10 C 0.141 3.859 11 O -0.265 6.265 12 C 0.043 3.957 13 C -0.003 4.003 14 N -0.442 5.442 15 C 0.125 3.875 16 C -0.506 4.506 17 H 0.081 0.919 18 C 0.067 3.933 19 N -0.899 5.899 20 Si 0.875 3.125 21 H -0.277 1.277 22 H -0.268 1.268 23 H -0.285 1.285 24 C -0.006 4.006 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.129 0.871 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.129 0.871 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.028 0.972 42 H -0.005 1.005 43 H 0.264 0.736 44 H 0.075 0.925 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.756 -15.897 5.081 22.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.017 4.017 3 C -0.200 4.200 4 C -0.198 4.198 5 C -0.104 4.104 6 C -0.105 4.105 7 C -0.182 4.182 8 C -0.105 4.105 9 C -0.229 4.229 10 C 0.096 3.904 11 O -0.177 6.177 12 C -0.014 4.014 13 C -0.133 4.133 14 N -0.164 5.164 15 C -0.002 4.002 16 C -0.544 4.544 17 H 0.099 0.901 18 C -0.134 4.134 19 N -0.538 5.538 20 Si 0.702 3.298 21 H -0.203 1.203 22 H -0.193 1.193 23 H -0.210 1.210 24 C -0.136 4.136 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.147 0.853 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.147 0.853 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.046 0.954 42 H 0.013 0.987 43 H 0.074 0.926 44 H 0.093 0.907 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.026 -15.076 4.515 22.462 hybrid contribution 1.793 -1.034 0.474 2.124 sum -14.233 -16.110 4.990 22.069 Atomic orbital electron populations 1.21982 0.94832 1.01410 1.01805 1.19319 0.94674 0.95531 0.92170 1.21927 1.03537 0.93613 1.00961 1.21891 1.02899 0.99054 0.95914 1.19273 0.89860 1.02956 0.98283 1.20984 0.99370 0.96786 0.93383 1.20979 0.95496 1.03037 0.98705 1.20888 0.93098 0.98279 0.98241 1.21292 1.00611 1.04795 0.96197 1.18933 0.89506 0.92923 0.89085 1.86246 1.14993 1.69399 1.47107 1.23670 0.79943 0.98293 0.99516 1.24048 0.97422 0.93837 0.97949 1.69037 1.27092 1.12431 1.07838 1.20767 0.85008 0.98528 0.95892 1.20950 0.96398 0.88957 1.48084 0.90127 1.24929 0.98619 0.94797 0.95057 1.69897 1.25850 1.07775 1.50306 0.86872 0.83607 0.80653 0.78664 1.20324 1.19286 1.21034 1.24261 0.98592 0.96371 0.94334 0.92526 0.92409 0.92668 0.90084 0.92749 0.93310 0.93441 0.92707 0.90788 0.85310 0.86371 0.86240 0.85323 0.89674 0.89470 0.90699 0.95357 0.98682 0.92643 0.90735 0.89573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 7.13 37.16 0.26 -1.11 16 2 C -0.02 -0.20 0.75 -155.66 -0.12 -0.32 16 3 C -0.14 -1.96 8.26 37.16 0.31 -1.65 16 4 C -0.14 -1.70 8.26 37.16 0.31 -1.40 16 5 C -0.10 -1.31 4.77 -104.47 -0.50 -1.81 16 6 C -0.09 -0.96 8.97 -39.61 -0.36 -1.31 16 7 C -0.16 -1.69 10.04 -39.56 -0.40 -2.09 16 8 C -0.09 -0.94 10.04 -39.60 -0.40 -1.33 16 9 C -0.21 -2.60 9.03 -39.43 -0.36 -2.95 16 10 C 0.14 1.95 6.27 -39.21 -0.25 1.71 16 11 O -0.27 -4.05 5.86 -19.41 -0.11 -4.16 16 12 C 0.04 0.63 4.06 -26.20 -0.11 0.52 16 13 C 0.00 -0.05 7.52 -7.56 -0.06 -0.11 16 14 N -0.44 -9.26 6.32 -246.13 -1.55 -10.82 16 15 C 0.13 3.02 3.64 -4.98 -0.02 3.00 16 16 C -0.51 -14.65 9.94 -34.44 -0.34 -14.99 16 17 H 0.08 2.59 8.06 -52.49 -0.42 2.17 16 18 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 19 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 20 Si 0.87 21.39 27.47 -169.99 -4.67 16.72 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 C -0.01 -0.11 7.56 -7.55 -0.06 -0.17 16 25 H 0.06 0.51 7.51 -51.93 -0.39 0.12 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.48 7.52 -51.93 -0.39 0.09 16 28 H 0.08 1.33 6.14 -51.93 -0.32 1.01 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 1.03 6.14 -51.93 -0.32 0.71 16 34 H 0.13 1.15 5.90 -52.49 -0.31 0.84 16 35 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 36 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.13 1.45 5.89 -52.49 -0.31 1.14 16 38 H 0.09 1.03 5.91 -51.93 -0.31 0.72 16 39 H 0.09 1.37 8.14 -51.92 -0.42 0.95 16 40 H 0.08 1.11 7.91 -51.93 -0.41 0.70 16 41 H 0.03 0.69 7.14 -51.92 -0.37 0.32 16 42 H 0.00 -0.10 6.73 -51.93 -0.35 -0.45 16 43 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.07 1.25 7.42 -51.93 -0.39 0.87 16 45 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 349.74 15.07 5.27 5.27 Total: -1.00 -31.47 349.74 -9.71 -41.18 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -7.25 Total: 1.01 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: -2.17 Total: -22.14 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: -0.78 Total: -37.89 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: -0.11 Total: -4.16 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.47 -9.71 -41.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227470547.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.093 kcal (2) G-P(sol) polarization free energy of solvation -31.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds