Wall clock time and date at job start Tue Mar 31 2020 06:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46759 * 2 1 4 4 C 1.52994 * 109.46860 * 180.02562 * 3 2 1 5 5 C 1.50709 * 109.47033 * 180.02562 * 4 3 2 6 6 C 1.38264 * 119.94404 * 89.99671 * 5 4 3 7 7 C 1.38142 * 120.05668 * 180.02562 * 6 5 4 8 8 C 1.38741 * 119.94297 * 0.02562 * 7 6 5 9 9 O 1.35901 * 120.05508 * 180.02562 * 8 7 6 10 10 C 1.42900 * 116.99974 * 5.72810 * 9 8 7 11 11 C 1.53510 * 114.16707 * 156.74376 * 10 9 8 12 12 N 1.47483 * 87.93037 * 87.81555 * 11 10 9 13 13 C 1.46898 * 111.00155 * 138.70289 * 12 11 10 14 14 C 1.50701 * 109.47311 * 169.99454 * 13 12 11 15 15 H 1.08003 * 119.99742 * 0.02562 * 14 13 12 16 16 C 1.37869 * 120.00404 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99919 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00140 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47075 * 179.97438 * 18 16 14 20 20 H 1.48495 * 109.47314 * 299.99913 * 18 16 14 21 21 H 1.48501 * 109.47174 * 60.00197 * 18 16 14 22 22 C 1.47475 * 87.83687 * 27.00739 * 12 11 10 23 23 C 1.38735 * 119.88439 * 0.27276 * 8 7 6 24 24 C 1.38142 * 119.94729 * 359.47449 * 23 8 7 25 25 H 1.09004 * 109.47257 * 60.00017 * 1 2 3 26 26 H 1.08997 * 109.46938 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47254 * 299.99981 * 1 2 3 28 28 H 1.08992 * 109.46824 * 240.00467 * 2 1 3 29 29 H 1.08991 * 109.47435 * 119.99811 * 2 1 3 30 30 H 1.09000 * 109.47222 * 59.99999 * 3 2 1 31 31 H 1.09004 * 109.47222 * 300.00004 * 3 2 1 32 32 H 1.09000 * 109.47406 * 59.99864 * 4 3 2 33 33 H 1.09000 * 109.47425 * 299.99674 * 4 3 2 34 34 H 1.07997 * 119.97514 * 0.02562 * 6 5 4 35 35 H 1.08000 * 120.02901 * 179.97438 * 7 6 5 36 36 H 1.09004 * 113.25747 * 23.79384 * 10 9 8 37 37 H 1.08998 * 113.47868 * 333.04577 * 11 10 9 38 38 H 1.08998 * 113.47371 * 202.57555 * 11 10 9 39 39 H 1.09005 * 109.46892 * 49.99721 * 13 12 11 40 40 H 1.08997 * 109.47313 * 289.99504 * 13 12 11 41 41 H 0.96999 * 120.00182 * 180.02562 * 17 16 14 42 42 H 1.09001 * 113.47843 * 87.76268 * 22 12 11 43 43 H 1.09007 * 113.47722 * 218.22539 * 22 12 11 44 44 H 1.08004 * 120.02399 * 179.72335 * 23 8 7 45 45 H 1.07998 * 119.97365 * 180.23424 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0722 2.8635 0.0000 6 6 4.3027 3.5135 1.1984 7 6 4.7626 4.8161 1.2017 8 6 4.9927 5.4723 0.0011 9 8 5.4457 6.7536 0.0017 10 6 5.7833 7.3218 1.2687 11 6 6.7769 8.4892 1.1892 12 7 5.6225 9.3896 1.0106 13 6 5.7938 10.6254 1.7860 14 6 4.7288 11.6167 1.3932 15 1 3.9975 11.3545 0.6429 16 6 4.6873 12.8577 1.9924 17 7 5.5775 13.1767 2.9064 18 14 3.3667 14.0860 1.5059 19 1 3.5392 15.3349 2.2906 20 1 3.4835 14.3908 0.0573 21 1 2.0270 13.5086 1.7838 22 6 4.8123 8.4071 1.7543 23 6 4.7548 4.8199 -1.1999 24 6 4.2998 3.5155 -1.1979 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5137 0.8899 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9329 0.9289 -0.8908 33 1 3.9336 0.9287 0.8891 34 1 4.1230 3.0025 2.1327 35 1 4.9421 5.3236 2.1380 36 1 6.0314 6.5750 2.0229 37 1 7.4312 8.4441 0.3186 38 1 7.3211 8.6601 2.1180 39 1 6.7773 11.0490 1.5820 40 1 5.7079 10.4021 2.8494 41 1 5.5481 14.0497 3.3282 42 1 4.8322 8.5560 2.8339 43 1 3.8015 8.2923 1.3626 44 1 4.9289 5.3301 -2.1358 45 1 4.1181 3.0060 -2.1326 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227621282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:26 Heat of formation + Delta-G solvation = 7.944438 kcal Electronic energy + Delta-G solvation = -21873.941460 eV Core-core repulsion = 18664.274570 eV Total energy + Delta-G solvation = -3209.666891 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.46556 -39.09462 -37.11723 -35.53186 -32.88656 -31.85403 -31.06831 -29.35353 -27.99604 -25.63561 -25.30210 -24.12279 -23.10977 -21.71307 -21.43024 -20.93811 -19.45504 -17.94031 -16.37898 -16.15771 -15.59287 -15.47856 -15.39905 -14.78276 -14.54592 -14.33228 -14.26665 -13.71081 -13.58857 -13.37411 -13.18289 -12.91167 -12.72037 -12.41008 -12.05759 -11.98109 -11.62517 -11.56477 -11.35310 -11.30598 -10.94074 -10.90237 -10.84228 -10.71390 -10.47848 -10.32845 -10.00782 -9.67241 -9.28499 -9.01698 -8.43757 -7.97628 -7.86408 -6.04196 -4.05239 1.32752 1.41876 3.26781 3.34375 3.37448 3.41694 3.71657 4.42324 4.50274 4.59894 4.67886 4.78448 4.79909 4.82005 4.85335 4.98430 5.07085 5.18905 5.30903 5.33084 5.37399 5.42225 5.43619 5.50983 5.55739 5.68639 5.70727 5.83194 5.85224 5.86160 5.94882 6.01337 6.06816 6.08731 6.15261 6.27548 6.33846 6.40680 6.58513 6.59839 6.82554 7.12538 7.62523 7.63841 7.84787 8.08625 8.44446 9.02182 9.58882 11.06856 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023823 B = 0.002517 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.075025 B =11120.758896 C =11756.570334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.116 4.116 4 C -0.073 4.073 5 C -0.131 4.131 6 C -0.077 4.077 7 C -0.209 4.209 8 C 0.136 3.864 9 O -0.276 6.276 10 C 0.045 3.955 11 C 0.000 4.000 12 N -0.456 5.456 13 C 0.156 3.844 14 C -0.504 4.504 15 H 0.063 0.937 16 C 0.053 3.947 17 N -0.901 5.901 18 Si 0.901 3.099 19 H -0.288 1.288 20 H -0.275 1.275 21 H -0.277 1.277 22 C -0.006 4.006 23 C -0.153 4.153 24 C -0.078 4.078 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.120 0.880 35 H 0.130 0.870 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.030 0.970 40 H 0.004 0.996 41 H 0.262 0.738 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.130 0.870 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.573 -26.087 -3.731 26.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.153 4.153 4 C -0.110 4.110 5 C -0.131 4.131 6 C -0.095 4.095 7 C -0.227 4.227 8 C 0.090 3.910 9 O -0.189 6.189 10 C -0.012 4.012 11 C -0.129 4.129 12 N -0.179 5.179 13 C 0.030 3.970 14 C -0.543 4.543 15 H 0.081 0.919 16 C -0.148 4.148 17 N -0.541 5.541 18 Si 0.728 3.272 19 H -0.213 1.213 20 H -0.201 1.201 21 H -0.203 1.203 22 C -0.135 4.135 23 C -0.172 4.172 24 C -0.097 4.097 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.138 0.862 35 H 0.148 0.852 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.048 0.952 40 H 0.022 0.978 41 H 0.071 0.929 42 H 0.094 0.906 43 H 0.100 0.900 44 H 0.148 0.852 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.686 -25.509 -4.432 26.152 hybrid contribution -0.407 0.738 0.974 1.288 sum -4.093 -24.771 -3.458 25.344 Atomic orbital electron populations 1.21782 0.95937 1.01454 1.01957 1.21552 0.95864 0.96972 1.01883 1.21636 0.94650 0.96495 1.02564 1.20507 0.95383 0.92658 1.02467 1.19714 1.03594 0.96720 0.93085 1.20777 0.97388 0.93802 0.97512 1.21314 1.07102 0.96749 0.97575 1.19169 0.93661 0.84170 0.94038 1.86188 1.78082 1.23641 1.30974 1.23700 0.98940 0.94211 0.84392 1.24003 0.95870 0.91151 1.01909 1.69088 1.03922 1.02066 1.42844 1.20305 0.98258 0.87187 0.91251 1.21058 1.13210 0.98076 1.21935 0.91879 1.25009 0.96334 0.98307 0.95110 1.69944 1.35380 1.21883 1.26875 0.86516 0.81874 0.80141 0.78638 1.21336 1.20099 1.20252 1.24244 0.99454 0.91753 0.98080 1.20441 1.05289 0.94979 0.96473 1.20781 0.97741 0.93535 0.97594 0.92716 0.92911 0.92719 0.92102 0.92110 0.91838 0.91818 0.91339 0.91396 0.86178 0.85206 0.89693 0.89702 0.90454 0.95159 0.97848 0.92858 0.90618 0.89997 0.85237 0.85772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.58 16 2 C -0.13 -0.79 5.93 -26.73 -0.16 -0.95 16 3 C -0.12 -0.86 5.20 -26.73 -0.14 -1.00 16 4 C -0.07 -0.56 5.34 -27.88 -0.15 -0.71 16 5 C -0.13 -1.34 5.14 -104.60 -0.54 -1.88 16 6 C -0.08 -0.84 9.69 -39.61 -0.38 -1.22 16 7 C -0.21 -2.66 9.03 -39.43 -0.36 -3.01 16 8 C 0.14 1.97 6.68 -39.21 -0.26 1.71 16 9 O -0.28 -4.70 10.19 -19.43 -0.20 -4.90 16 10 C 0.04 0.72 4.06 -26.20 -0.11 0.61 16 11 C 0.00 0.00 7.52 -7.54 -0.06 -0.06 16 12 N -0.46 -10.28 6.32 -246.12 -1.55 -11.83 16 13 C 0.16 4.12 4.57 -4.98 -0.02 4.10 16 14 C -0.50 -14.66 9.39 -34.44 -0.32 -14.98 16 15 H 0.06 1.85 7.81 -52.48 -0.41 1.44 16 16 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 17 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 18 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 C -0.01 -0.11 7.56 -7.55 -0.06 -0.17 16 23 C -0.15 -1.98 9.99 -39.43 -0.39 -2.37 16 24 C -0.08 -0.84 9.69 -39.61 -0.38 -1.23 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 33 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 34 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.13 1.53 5.89 -52.49 -0.31 1.22 16 36 H 0.09 1.12 5.90 -51.93 -0.31 0.82 16 37 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 38 H 0.08 1.29 7.91 -51.93 -0.41 0.88 16 39 H 0.03 0.85 8.08 -51.93 -0.42 0.43 16 40 H 0.00 0.10 7.30 -51.93 -0.38 -0.28 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.08 1.39 7.42 -51.93 -0.39 1.00 16 43 H 0.08 1.59 8.14 -51.92 -0.42 1.17 16 44 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 45 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 368.06 15.07 5.55 5.55 Total: -1.00 -31.43 368.06 -11.22 -42.65 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -7.67 Total: -2.02 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -3.06 Total: -20.28 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: -0.82 Total: -38.09 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.20 Total: -4.90 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.43 -11.22 -42.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227621282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.591 kcal (2) G-P(sol) polarization free energy of solvation -31.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds