Wall clock time and date at job start Tue Mar 31 2020 06:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46759 * 2 1 4 4 C 1.52994 * 109.46860 * 180.02562 * 3 2 1 5 5 C 1.50709 * 109.47033 * 180.02562 * 4 3 2 6 6 C 1.38264 * 119.94404 * 89.99671 * 5 4 3 7 7 C 1.38142 * 120.05668 * 180.02562 * 6 5 4 8 8 C 1.38741 * 119.94297 * 0.02562 * 7 6 5 9 9 O 1.35901 * 120.05508 * 180.02562 * 8 7 6 10 10 C 1.42900 * 116.99974 * 5.72810 * 9 8 7 11 11 C 1.53510 * 114.16707 * 156.74376 * 10 9 8 12 12 N 1.47483 * 87.93037 * 87.81555 * 11 10 9 13 13 C 1.46898 * 111.00155 * 138.70289 * 12 11 10 14 14 C 1.50701 * 109.47311 * 169.99454 * 13 12 11 15 15 H 1.08003 * 119.99742 * 0.02562 * 14 13 12 16 16 C 1.37869 * 120.00404 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99919 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00140 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47075 * 179.97438 * 18 16 14 20 20 H 1.48495 * 109.47314 * 299.99913 * 18 16 14 21 21 H 1.48501 * 109.47174 * 60.00197 * 18 16 14 22 22 C 1.47475 * 87.83687 * 27.00739 * 12 11 10 23 23 C 1.38735 * 119.88439 * 0.27276 * 8 7 6 24 24 C 1.38142 * 119.94729 * 359.47449 * 23 8 7 25 25 H 1.09004 * 109.47257 * 60.00017 * 1 2 3 26 26 H 1.08997 * 109.46938 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47254 * 299.99981 * 1 2 3 28 28 H 1.08992 * 109.46824 * 240.00467 * 2 1 3 29 29 H 1.08991 * 109.47435 * 119.99811 * 2 1 3 30 30 H 1.09000 * 109.47222 * 59.99999 * 3 2 1 31 31 H 1.09004 * 109.47222 * 300.00004 * 3 2 1 32 32 H 1.09000 * 109.47406 * 59.99864 * 4 3 2 33 33 H 1.09000 * 109.47425 * 299.99674 * 4 3 2 34 34 H 1.07997 * 119.97514 * 0.02562 * 6 5 4 35 35 H 1.08000 * 120.02901 * 179.97438 * 7 6 5 36 36 H 1.09004 * 113.25747 * 23.79384 * 10 9 8 37 37 H 1.08998 * 113.47868 * 333.04577 * 11 10 9 38 38 H 1.08998 * 113.47371 * 202.57555 * 11 10 9 39 39 H 1.09005 * 109.46892 * 49.99721 * 13 12 11 40 40 H 1.08997 * 109.47313 * 289.99504 * 13 12 11 41 41 H 0.96999 * 120.00182 * 180.02562 * 17 16 14 42 42 H 1.09001 * 113.47843 * 87.76268 * 22 12 11 43 43 H 1.09007 * 113.47722 * 218.22539 * 22 12 11 44 44 H 1.08004 * 120.02399 * 179.72335 * 23 8 7 45 45 H 1.07998 * 119.97365 * 180.23424 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0722 2.8635 0.0000 6 6 4.3027 3.5135 1.1984 7 6 4.7626 4.8161 1.2017 8 6 4.9927 5.4723 0.0011 9 8 5.4457 6.7536 0.0017 10 6 5.7833 7.3218 1.2687 11 6 6.7769 8.4892 1.1892 12 7 5.6225 9.3896 1.0106 13 6 5.7938 10.6254 1.7860 14 6 4.7288 11.6167 1.3932 15 1 3.9975 11.3545 0.6429 16 6 4.6873 12.8577 1.9924 17 7 5.5775 13.1767 2.9064 18 14 3.3667 14.0860 1.5059 19 1 3.5392 15.3349 2.2906 20 1 3.4835 14.3908 0.0573 21 1 2.0270 13.5086 1.7838 22 6 4.8123 8.4071 1.7543 23 6 4.7548 4.8199 -1.1999 24 6 4.2998 3.5155 -1.1979 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5137 0.8899 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9329 0.9289 -0.8908 33 1 3.9336 0.9287 0.8891 34 1 4.1230 3.0025 2.1327 35 1 4.9421 5.3236 2.1380 36 1 6.0314 6.5750 2.0229 37 1 7.4312 8.4441 0.3186 38 1 7.3211 8.6601 2.1180 39 1 6.7773 11.0490 1.5820 40 1 5.7079 10.4021 2.8494 41 1 5.5481 14.0497 3.3282 42 1 4.8322 8.5560 2.8339 43 1 3.8015 8.2923 1.3626 44 1 4.9289 5.3301 -2.1358 45 1 4.1181 3.0060 -2.1326 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227621282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:25 Heat of formation + Delta-G solvation = -10.490709 kcal Electronic energy + Delta-G solvation = -21874.740868 eV Core-core repulsion = 18664.274570 eV Total energy + Delta-G solvation = -3210.466299 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.71986 -40.26081 -38.24474 -36.23267 -35.03082 -32.63994 -31.98719 -31.13188 -28.81991 -27.39612 -26.87596 -24.89059 -24.35209 -23.20121 -22.27824 -21.72771 -20.69285 -19.12798 -18.55028 -17.27771 -16.97004 -16.49406 -16.40415 -16.15716 -15.76479 -15.68434 -15.13024 -14.96097 -14.78107 -14.44166 -14.30591 -13.94845 -13.70397 -13.58545 -13.43975 -13.21816 -13.01171 -12.84445 -12.47690 -12.39576 -12.29239 -12.07520 -11.95151 -11.76961 -11.55878 -11.46593 -11.38681 -11.31305 -11.21981 -10.64124 -9.91695 -9.63273 -8.95639 -8.25679 -6.35857 0.42814 0.48731 1.37363 1.40772 1.49128 2.09420 2.37115 2.79944 3.05977 3.30076 3.31806 3.74055 3.86888 3.90857 4.01552 4.15765 4.21483 4.28221 4.39870 4.40388 4.47501 4.49582 4.49745 4.58035 4.64275 4.73221 4.82220 4.88957 4.89379 4.93955 5.00673 5.01155 5.05435 5.16425 5.21124 5.35094 5.41494 5.43143 5.46511 5.54401 5.55242 5.74602 5.76120 5.93256 6.04661 6.41034 6.54195 6.77321 7.33434 8.84975 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023823 B = 0.002517 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.075025 B =11120.758896 C =11756.570334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C -0.113 4.113 4 C -0.069 4.069 5 C -0.125 4.125 6 C -0.081 4.081 7 C -0.215 4.215 8 C 0.102 3.898 9 O -0.302 6.302 10 C 0.071 3.929 11 C -0.001 4.001 12 N -0.487 5.487 13 C 0.172 3.828 14 C -0.530 4.530 15 H 0.052 0.948 16 C 0.003 3.997 17 N -0.931 5.931 18 Si 0.970 3.030 19 H -0.277 1.277 20 H -0.271 1.271 21 H -0.268 1.268 22 C -0.009 4.009 23 C -0.167 4.167 24 C -0.079 4.079 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.144 0.856 35 H 0.137 0.863 36 H 0.121 0.879 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.004 0.996 40 H -0.011 1.011 41 H 0.266 0.734 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.128 0.872 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.452 -28.223 -3.779 28.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.160 4.160 3 C -0.151 4.151 4 C -0.107 4.107 5 C -0.125 4.125 6 C -0.098 4.098 7 C -0.233 4.233 8 C 0.057 3.943 9 O -0.216 6.216 10 C 0.014 3.986 11 C -0.130 4.130 12 N -0.210 5.210 13 C 0.045 3.955 14 C -0.568 4.568 15 H 0.071 0.929 16 C -0.195 4.195 17 N -0.571 5.571 18 Si 0.794 3.206 19 H -0.202 1.202 20 H -0.196 1.196 21 H -0.193 1.193 22 C -0.138 4.138 23 C -0.185 4.185 24 C -0.097 4.097 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.161 0.839 35 H 0.154 0.846 36 H 0.139 0.861 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.022 0.978 40 H 0.006 0.994 41 H 0.075 0.925 42 H 0.100 0.900 43 H 0.090 0.910 44 H 0.146 0.854 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.566 -27.674 -4.487 28.405 hybrid contribution -0.150 1.263 0.950 1.587 sum -4.716 -26.412 -3.538 27.061 Atomic orbital electron populations 1.21801 0.96050 1.01857 1.01640 1.21531 0.95760 0.96178 1.02516 1.21596 0.94445 0.97192 1.01855 1.20550 0.95362 0.91015 1.03738 1.20087 1.01918 0.97852 0.92631 1.21099 0.96629 0.93217 0.98904 1.21456 1.07187 0.97534 0.97126 1.19451 0.95794 0.83597 0.95425 1.86138 1.78942 1.25316 1.31163 1.23437 0.96064 0.94017 0.85082 1.24077 0.95298 0.90917 1.02734 1.68992 1.07123 1.01882 1.43027 1.19972 0.96081 0.88746 0.90703 1.21364 1.13905 0.99408 1.22120 0.92926 1.25907 0.98611 1.00165 0.94858 1.70050 1.36862 1.22571 1.27605 0.85435 0.79031 0.77685 0.78466 1.20228 1.19582 1.19339 1.24272 0.99258 0.92184 0.98095 1.20643 1.05788 0.95982 0.96101 1.21085 0.96822 0.92703 0.99058 0.93016 0.92178 0.93097 0.91420 0.91506 0.92632 0.92512 0.90062 0.90198 0.83863 0.84551 0.86138 0.89416 0.89090 0.97792 0.99365 0.92479 0.90047 0.91036 0.85415 0.83372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.91 71.98 0.71 -0.93 16 2 C -0.12 -1.23 5.93 30.60 0.18 -1.05 16 3 C -0.11 -1.42 5.20 30.59 0.16 -1.26 16 4 C -0.07 -0.85 5.34 29.85 0.16 -0.69 16 5 C -0.12 -2.24 5.14 -19.85 -0.10 -2.34 16 6 C -0.08 -1.57 9.69 22.25 0.22 -1.35 16 7 C -0.21 -5.14 9.03 22.37 0.20 -4.93 16 8 C 0.10 2.92 6.68 22.51 0.15 3.07 16 9 O -0.30 -10.29 10.19 -92.44 -0.94 -11.24 16 10 C 0.07 2.25 4.06 30.94 0.13 2.37 16 11 C 0.00 -0.05 7.52 83.57 0.63 0.58 16 12 N -0.49 -22.56 6.32 -932.96 -5.89 -28.45 16 13 C 0.17 9.41 4.57 85.56 0.39 9.80 16 14 C -0.53 -31.61 9.39 25.60 0.24 -31.37 16 15 H 0.05 3.17 7.81 -2.91 -0.02 3.15 16 16 C 0.00 0.17 5.46 84.65 0.46 0.63 16 17 N -0.93 -56.54 13.29 21.44 0.28 -56.25 16 18 Si 0.97 45.60 29.54 68.60 2.03 47.63 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 22 C -0.01 -0.33 7.56 83.58 0.63 0.30 16 23 C -0.17 -4.20 9.99 22.37 0.22 -3.98 16 24 C -0.08 -1.54 9.69 22.25 0.22 -1.33 16 25 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 26 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.08 0.83 8.09 -2.39 -0.02 0.81 16 33 H 0.08 0.83 8.08 -2.39 -0.02 0.81 16 34 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 35 H 0.14 2.96 5.89 -2.91 -0.02 2.94 16 36 H 0.12 2.96 5.90 -2.38 -0.01 2.95 16 37 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 38 H 0.09 3.03 7.91 -2.39 -0.02 3.01 16 39 H 0.00 0.23 8.08 -2.38 -0.02 0.21 16 40 H -0.01 -0.64 7.30 -2.39 -0.02 -0.66 16 41 H 0.27 15.17 8.31 -92.71 -0.77 14.39 16 42 H 0.08 3.02 7.42 -2.39 -0.02 3.00 16 43 H 0.07 2.85 8.14 -2.38 -0.02 2.83 16 44 H 0.13 3.13 8.06 -2.91 -0.02 3.11 16 45 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -68.72 368.06 1.01 -67.71 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 0.94 Total: 13.09 kcal Atomic # 6 Polarization: -37.08 SS G_CDS: 4.60 Total: -32.48 kcal Atomic # 7 Polarization: -79.10 SS G_CDS: -5.61 Total: -84.70 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -0.94 Total: -11.24 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -68.72 1.01 -67.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227621282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.215 kcal (2) G-P(sol) polarization free energy of solvation -68.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds