Wall clock time and date at job start Tue Mar 31 2020 06:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47395 * 2 1 4 4 C 1.52997 * 109.47395 * 179.97438 * 3 2 1 5 5 C 1.50704 * 109.47309 * 179.97438 * 4 3 2 6 6 C 1.38261 * 119.94393 * 89.99520 * 5 4 3 7 7 C 1.38142 * 120.05405 * 180.02562 * 6 5 4 8 8 C 1.38738 * 119.94691 * 0.02562 * 7 6 5 9 9 O 1.35899 * 120.05576 * 180.02562 * 8 7 6 10 10 C 1.42896 * 116.99992 * 185.48553 * 9 8 7 11 11 H 1.09005 * 110.78179 * 33.00424 * 10 9 8 12 12 C 1.55150 * 110.72620 * 156.24945 * 10 9 8 13 13 C 1.54911 * 101.58681 * 153.86322 * 12 10 9 14 14 N 1.47427 * 104.82922 * 322.99263 * 13 12 10 15 15 C 1.36933 * 125.64573 * 204.07543 * 14 13 12 16 16 H 1.07999 * 119.99899 * 180.02562 * 15 14 13 17 17 C 1.38814 * 120.00005 * 0.06268 * 15 14 13 18 18 N 1.31616 * 120.00298 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99941 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46940 * 59.99574 * 19 17 15 21 21 H 1.48501 * 109.47186 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47417 * 299.99852 * 19 17 15 23 23 C 1.47020 * 108.70386 * 24.12844 * 14 13 12 24 24 C 1.38723 * 119.88370 * 0.27478 * 8 7 6 25 25 C 1.38151 * 119.94688 * 359.42904 * 24 8 7 26 26 H 1.08999 * 109.47151 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47470 * 300.00516 * 1 2 3 28 28 H 1.09005 * 109.46924 * 60.00333 * 1 2 3 29 29 H 1.08998 * 109.47470 * 239.99484 * 2 1 3 30 30 H 1.09005 * 109.46924 * 119.99667 * 2 1 3 31 31 H 1.08998 * 109.47233 * 59.99339 * 3 2 1 32 32 H 1.09005 * 109.46813 * 299.99735 * 3 2 1 33 33 H 1.08992 * 109.47458 * 59.99936 * 4 3 2 34 34 H 1.09000 * 109.46892 * 299.99179 * 4 3 2 35 35 H 1.08001 * 119.97425 * 359.97438 * 6 5 4 36 36 H 1.08007 * 120.03105 * 179.97438 * 7 6 5 37 37 H 1.08996 * 111.00796 * 271.94463 * 12 10 9 38 38 H 1.09003 * 111.00043 * 35.79171 * 12 10 9 39 39 H 1.09001 * 110.36151 * 81.83043 * 13 12 10 40 40 H 1.08996 * 110.36567 * 204.15548 * 13 12 10 41 41 H 0.96996 * 120.00057 * 180.02562 * 18 17 15 42 42 H 1.09001 * 109.88141 * 239.52243 * 23 14 13 43 43 H 1.08996 * 109.88402 * 118.35701 * 23 14 13 44 44 H 1.08001 * 120.02891 * 179.71943 * 24 8 7 45 45 H 1.08000 * 119.97221 * 180.27317 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0724 2.8633 0.0000 6 6 4.3019 3.5147 1.1978 7 6 4.7619 4.8173 1.1998 8 6 4.9931 5.4720 -0.0013 9 8 5.4461 6.7533 -0.0018 10 6 5.5472 7.4051 -1.2694 11 1 4.7647 7.0600 -1.9452 12 6 5.4867 8.9462 -1.1008 13 6 6.2629 9.4269 -2.3522 14 7 7.3465 8.4423 -2.5253 15 6 8.5324 8.6663 -3.1722 16 1 9.2649 7.8761 -3.2459 17 6 8.7934 9.9092 -3.7325 18 7 7.9009 10.8723 -3.6425 19 14 10.4116 10.2150 -4.6144 20 1 10.5392 9.2730 -5.7553 21 1 10.4439 11.6111 -5.1196 22 1 11.5378 10.0037 -3.6698 23 6 6.9424 7.1798 -1.8895 24 6 4.7561 4.8183 -1.2016 25 6 4.3019 3.5136 -1.1984 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6766 1.9563 0.8899 32 1 1.6767 1.9563 -0.8901 33 1 3.9337 0.9285 -0.8890 34 1 3.9329 0.9289 0.8909 35 1 4.1205 3.0050 2.1325 36 1 4.9406 5.3259 2.1357 37 1 4.4563 9.3012 -1.1199 38 1 5.9890 9.2590 -0.1854 39 1 5.6103 9.4303 -3.2252 40 1 6.6770 10.4209 -2.1831 41 1 8.0831 11.7407 -4.0344 42 1 7.6557 6.9124 -1.1099 43 1 6.8925 6.3878 -2.6367 44 1 4.9310 5.3273 -2.1380 45 1 4.1215 3.0027 -2.1327 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227623501.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:46 Heat of formation + Delta-G solvation = -7.897008 kcal Electronic energy + Delta-G solvation = -22310.657663 eV Core-core repulsion = 19100.303836 eV Total energy + Delta-G solvation = -3210.353828 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.11959 -38.24524 -36.42739 -35.44845 -32.44757 -31.69027 -30.93864 -29.35103 -28.06275 -27.27470 -24.69780 -23.94734 -22.84183 -21.52682 -20.98014 -20.25617 -19.93353 -17.99389 -17.04301 -16.03158 -15.50195 -15.34108 -15.10909 -14.69841 -14.40168 -14.22938 -13.82613 -13.72053 -13.48223 -13.13988 -12.84361 -12.70967 -12.45432 -12.35012 -11.86269 -11.67723 -11.57507 -11.44238 -11.28157 -11.03731 -10.93392 -10.86116 -10.79464 -10.68179 -10.37951 -10.21056 -10.02189 -9.81983 -9.62094 -8.91657 -8.69390 -7.87496 -6.90016 -5.69596 -3.11962 1.42747 1.52005 3.39399 3.42947 3.44395 3.52810 3.82254 4.46551 4.55077 4.65260 4.82904 4.87359 4.95864 5.05513 5.12723 5.22517 5.31682 5.41287 5.43210 5.46094 5.46772 5.49463 5.55571 5.60009 5.64079 5.71799 5.75150 5.83446 5.87698 6.00279 6.10355 6.11856 6.24886 6.37542 6.39760 6.47982 6.48991 6.62319 6.63736 6.68074 6.95906 7.41589 7.57439 7.73490 7.81861 8.29947 9.16917 9.77193 10.40613 11.34724 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.032604 B = 0.002647 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.582254 B =10575.494103 C =10826.129721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.115 4.115 4 C -0.073 4.073 5 C -0.132 4.132 6 C -0.080 4.080 7 C -0.157 4.157 8 C 0.138 3.862 9 O -0.305 6.305 10 C 0.069 3.931 11 H 0.077 0.923 12 C -0.136 4.136 13 C 0.153 3.847 14 N -0.601 5.601 15 C -0.224 4.224 16 H 0.078 0.922 17 C -0.011 4.011 18 N -0.924 5.924 19 Si 0.918 3.082 20 H -0.285 1.285 21 H -0.289 1.289 22 H -0.284 1.284 23 C 0.119 3.881 24 C -0.205 4.205 25 C -0.076 4.076 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.016 0.984 40 H 0.114 0.886 41 H 0.254 0.746 42 H 0.035 0.965 43 H 0.025 0.975 44 H 0.132 0.868 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.719 -17.523 8.364 23.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.153 4.153 4 C -0.110 4.110 5 C -0.132 4.132 6 C -0.098 4.098 7 C -0.176 4.176 8 C 0.092 3.908 9 O -0.218 6.218 10 C 0.013 3.987 11 H 0.095 0.905 12 C -0.175 4.175 13 C 0.028 3.972 14 N -0.328 5.328 15 C -0.352 4.352 16 H 0.096 0.904 17 C -0.206 4.206 18 N -0.572 5.572 19 Si 0.748 3.252 20 H -0.212 1.212 21 H -0.215 1.215 22 H -0.211 1.211 23 C -0.007 4.007 24 C -0.224 4.224 25 C -0.094 4.094 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.034 0.966 40 H 0.132 0.868 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.043 0.957 44 H 0.149 0.851 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.545 -17.215 8.403 22.898 hybrid contribution 0.793 0.094 -0.768 1.107 sum -11.752 -17.121 7.635 22.125 Atomic orbital electron populations 1.21779 0.95984 1.01431 1.01885 1.21557 0.95805 0.97029 1.01926 1.21628 0.94746 0.96437 1.02451 1.20501 0.95281 0.92748 1.02486 1.19690 1.03804 0.96661 0.93086 1.20748 0.98000 0.93572 0.97498 1.20417 1.05518 0.95305 0.96337 1.19131 0.93071 0.84714 0.93920 1.86159 1.79471 1.22925 1.33199 1.23670 0.98264 0.94077 0.82707 0.90505 1.23207 1.00836 0.90993 1.02458 1.22001 0.87736 0.97112 0.90370 1.44372 1.16769 1.06987 1.64708 1.19040 0.92120 0.96890 1.27155 0.90418 1.24805 0.98629 0.96043 1.01133 1.69744 1.34007 1.03525 1.49925 0.86106 0.82720 0.77027 0.79366 1.21161 1.21493 1.21068 1.21690 0.92837 0.90728 0.95448 1.21401 1.06669 0.96579 0.97763 1.20794 0.97355 0.93766 0.97500 0.92922 0.92769 0.92742 0.92072 0.92104 0.91900 0.91876 0.91363 0.91379 0.85908 0.85467 0.91542 0.90799 0.96575 0.86845 0.93535 0.94694 0.95674 0.85070 0.86187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.61 16 2 C -0.13 -0.84 5.93 -26.73 -0.16 -1.00 16 3 C -0.12 -0.91 5.20 -26.73 -0.14 -1.05 16 4 C -0.07 -0.63 5.34 -27.88 -0.15 -0.78 16 5 C -0.13 -1.50 5.13 -104.60 -0.54 -2.04 16 6 C -0.08 -0.93 9.69 -39.61 -0.38 -1.31 16 7 C -0.16 -2.15 9.99 -39.43 -0.39 -2.54 16 8 C 0.14 2.19 6.67 -39.22 -0.26 1.93 16 9 O -0.30 -5.52 9.86 -19.42 -0.19 -5.71 16 10 C 0.07 1.30 2.74 -24.90 -0.07 1.24 16 11 H 0.08 1.34 6.25 -51.93 -0.32 1.02 16 12 C -0.14 -2.69 6.81 -24.59 -0.17 -2.86 16 13 C 0.15 3.72 5.89 -2.53 -0.01 3.71 16 14 N -0.60 -15.73 3.39 -170.07 -0.58 -16.31 16 15 C -0.22 -6.32 10.27 -15.06 -0.15 -6.48 16 16 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 17 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 18 N -0.92 -26.84 10.09 55.49 0.56 -26.28 16 19 Si 0.92 22.12 29.55 -169.99 -5.02 17.09 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C 0.12 2.63 6.81 -3.06 -0.02 2.60 16 24 C -0.21 -3.03 8.91 -39.43 -0.35 -3.38 16 25 C -0.08 -0.95 9.69 -39.60 -0.38 -1.34 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 34 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 35 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.11 3.08 5.87 -51.93 -0.31 2.78 16 41 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.04 0.80 8.06 -51.93 -0.42 0.38 16 43 H 0.03 0.54 7.82 -51.93 -0.41 0.14 16 44 H 0.13 1.97 5.63 -52.49 -0.30 1.68 16 45 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 360.23 15.07 5.43 5.43 Total: -1.00 -29.97 360.23 -10.35 -40.32 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -7.63 Total: -0.24 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -2.91 Total: -14.30 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: -0.02 Total: -42.59 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.19 Total: -5.71 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.97 -10.35 -40.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227623501.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.423 kcal (2) G-P(sol) polarization free energy of solvation -29.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds