Wall clock time and date at job start Tue Mar 31 2020 06:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47395 * 2 1 4 4 C 1.52997 * 109.47395 * 179.97438 * 3 2 1 5 5 C 1.50704 * 109.47309 * 179.97438 * 4 3 2 6 6 C 1.38261 * 119.94393 * 89.99520 * 5 4 3 7 7 C 1.38142 * 120.05405 * 180.02562 * 6 5 4 8 8 C 1.38738 * 119.94691 * 0.02562 * 7 6 5 9 9 O 1.35899 * 120.05576 * 180.02562 * 8 7 6 10 10 C 1.42896 * 116.99992 * 185.48553 * 9 8 7 11 11 H 1.09005 * 110.78179 * 33.00424 * 10 9 8 12 12 C 1.55150 * 110.72620 * 156.24945 * 10 9 8 13 13 C 1.54911 * 101.58681 * 153.86322 * 12 10 9 14 14 N 1.47427 * 104.82922 * 322.99263 * 13 12 10 15 15 C 1.36933 * 125.64573 * 204.07543 * 14 13 12 16 16 H 1.07999 * 119.99899 * 180.02562 * 15 14 13 17 17 C 1.38814 * 120.00005 * 0.06268 * 15 14 13 18 18 N 1.31616 * 120.00298 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99941 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46940 * 59.99574 * 19 17 15 21 21 H 1.48501 * 109.47186 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47417 * 299.99852 * 19 17 15 23 23 C 1.47020 * 108.70386 * 24.12844 * 14 13 12 24 24 C 1.38723 * 119.88370 * 0.27478 * 8 7 6 25 25 C 1.38151 * 119.94688 * 359.42904 * 24 8 7 26 26 H 1.08999 * 109.47151 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47470 * 300.00516 * 1 2 3 28 28 H 1.09005 * 109.46924 * 60.00333 * 1 2 3 29 29 H 1.08998 * 109.47470 * 239.99484 * 2 1 3 30 30 H 1.09005 * 109.46924 * 119.99667 * 2 1 3 31 31 H 1.08998 * 109.47233 * 59.99339 * 3 2 1 32 32 H 1.09005 * 109.46813 * 299.99735 * 3 2 1 33 33 H 1.08992 * 109.47458 * 59.99936 * 4 3 2 34 34 H 1.09000 * 109.46892 * 299.99179 * 4 3 2 35 35 H 1.08001 * 119.97425 * 359.97438 * 6 5 4 36 36 H 1.08007 * 120.03105 * 179.97438 * 7 6 5 37 37 H 1.08996 * 111.00796 * 271.94463 * 12 10 9 38 38 H 1.09003 * 111.00043 * 35.79171 * 12 10 9 39 39 H 1.09001 * 110.36151 * 81.83043 * 13 12 10 40 40 H 1.08996 * 110.36567 * 204.15548 * 13 12 10 41 41 H 0.96996 * 120.00057 * 180.02562 * 18 17 15 42 42 H 1.09001 * 109.88141 * 239.52243 * 23 14 13 43 43 H 1.08996 * 109.88402 * 118.35701 * 23 14 13 44 44 H 1.08001 * 120.02891 * 179.71943 * 24 8 7 45 45 H 1.08000 * 119.97221 * 180.27317 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0724 2.8633 0.0000 6 6 4.3019 3.5147 1.1978 7 6 4.7619 4.8173 1.1998 8 6 4.9931 5.4720 -0.0013 9 8 5.4461 6.7533 -0.0018 10 6 5.5472 7.4051 -1.2694 11 1 4.7647 7.0600 -1.9452 12 6 5.4867 8.9462 -1.1008 13 6 6.2629 9.4269 -2.3522 14 7 7.3465 8.4423 -2.5253 15 6 8.5324 8.6663 -3.1722 16 1 9.2649 7.8761 -3.2459 17 6 8.7934 9.9092 -3.7325 18 7 7.9009 10.8723 -3.6425 19 14 10.4116 10.2150 -4.6144 20 1 10.5392 9.2730 -5.7553 21 1 10.4439 11.6111 -5.1196 22 1 11.5378 10.0037 -3.6698 23 6 6.9424 7.1798 -1.8895 24 6 4.7561 4.8183 -1.2016 25 6 4.3019 3.5136 -1.1984 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6766 1.9563 0.8899 32 1 1.6767 1.9563 -0.8901 33 1 3.9337 0.9285 -0.8890 34 1 3.9329 0.9289 0.8909 35 1 4.1205 3.0050 2.1325 36 1 4.9406 5.3259 2.1357 37 1 4.4563 9.3012 -1.1199 38 1 5.9890 9.2590 -0.1854 39 1 5.6103 9.4303 -3.2252 40 1 6.6770 10.4209 -2.1831 41 1 8.0831 11.7407 -4.0344 42 1 7.6557 6.9124 -1.1099 43 1 6.8925 6.3878 -2.6367 44 1 4.9310 5.3273 -2.1380 45 1 4.1215 3.0027 -2.1327 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227623501.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:46 Heat of formation + Delta-G solvation = -22.010840 kcal Electronic energy + Delta-G solvation = -22311.269685 eV Core-core repulsion = 19100.303836 eV Total energy + Delta-G solvation = -3210.965849 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.33154 -39.50840 -37.92744 -36.25893 -34.34407 -32.61530 -31.97163 -31.19898 -29.28137 -28.67059 -26.56632 -24.81747 -23.97977 -22.45255 -22.11039 -21.81125 -21.25835 -19.27385 -19.03597 -17.16190 -16.84200 -16.61072 -16.34639 -16.11331 -15.52899 -15.47314 -15.09030 -14.82041 -14.50061 -14.34855 -14.28454 -13.69989 -13.62403 -13.55773 -13.33065 -13.18284 -12.97581 -12.69037 -12.44843 -12.36467 -12.10066 -12.08485 -12.03111 -11.90486 -11.70233 -11.62351 -11.41223 -11.34804 -11.31483 -10.79387 -9.92697 -9.01417 -8.94448 -7.82759 -5.28810 0.41594 0.48208 1.45481 1.49089 1.55602 2.17626 2.48063 2.80730 3.27799 3.57960 3.64368 3.85516 3.87907 3.91435 3.94587 4.06738 4.15434 4.24342 4.38449 4.41390 4.47872 4.50329 4.56793 4.64960 4.76577 4.83213 4.85992 4.88936 4.92728 4.98300 5.00873 5.06242 5.15702 5.21330 5.35327 5.38653 5.41539 5.42802 5.47113 5.52705 5.55231 5.71403 5.74922 5.92749 6.23393 6.50467 7.04145 7.68973 8.32247 9.19364 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.032604 B = 0.002647 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.582254 B =10575.494103 C =10826.129721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.123 4.123 3 C -0.112 4.112 4 C -0.070 4.070 5 C -0.123 4.123 6 C -0.077 4.077 7 C -0.162 4.162 8 C 0.103 3.897 9 O -0.317 6.317 10 C 0.088 3.912 11 H 0.092 0.908 12 C -0.123 4.123 13 C 0.155 3.845 14 N -0.623 5.623 15 C -0.247 4.247 16 H 0.079 0.921 17 C -0.064 4.064 18 N -0.947 5.947 19 Si 0.985 3.015 20 H -0.277 1.277 21 H -0.290 1.290 22 H -0.277 1.277 23 C 0.119 3.881 24 C -0.218 4.218 25 C -0.083 4.083 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.154 0.846 36 H 0.135 0.865 37 H 0.097 0.903 38 H 0.069 0.931 39 H 0.001 0.999 40 H 0.083 0.917 41 H 0.251 0.749 42 H 0.023 0.977 43 H 0.030 0.970 44 H 0.122 0.878 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.427 -19.793 9.129 25.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.161 4.161 3 C -0.149 4.149 4 C -0.107 4.107 5 C -0.124 4.124 6 C -0.095 4.095 7 C -0.181 4.181 8 C 0.058 3.942 9 O -0.231 6.231 10 C 0.031 3.969 11 H 0.110 0.890 12 C -0.162 4.162 13 C 0.030 3.970 14 N -0.351 5.351 15 C -0.375 4.375 16 H 0.097 0.903 17 C -0.256 4.256 18 N -0.596 5.596 19 Si 0.813 3.187 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.203 1.203 23 C -0.007 4.007 24 C -0.236 4.236 25 C -0.101 4.101 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.171 0.829 36 H 0.153 0.847 37 H 0.115 0.885 38 H 0.088 0.912 39 H 0.019 0.981 40 H 0.101 0.899 41 H 0.060 0.940 42 H 0.041 0.959 43 H 0.048 0.952 44 H 0.140 0.860 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.268 -19.518 9.184 25.325 hybrid contribution 0.960 0.658 -0.957 1.507 sum -12.307 -18.860 8.228 23.976 Atomic orbital electron populations 1.21792 0.95869 1.01868 1.01711 1.21537 0.95905 0.96187 1.02445 1.21583 0.94146 0.97212 1.01973 1.20556 0.95637 0.90908 1.03642 1.20074 1.01922 0.97846 0.92519 1.21119 0.96668 0.92728 0.98975 1.20670 1.05339 0.96165 0.95917 1.19437 0.95341 0.84157 0.95281 1.86108 1.80469 1.24407 1.32069 1.23323 0.96567 0.93538 0.83477 0.89008 1.23020 1.01710 0.91744 0.99697 1.21785 0.87518 0.95777 0.91895 1.44664 1.16722 1.08861 1.64811 1.19396 0.93206 0.97275 1.27648 0.90319 1.25683 1.02068 0.95806 1.02088 1.69988 1.35587 1.03593 1.50465 0.85060 0.78711 0.76691 0.78284 1.20305 1.21531 1.20316 1.21772 0.94583 0.89262 0.95059 1.21426 1.07540 0.97624 0.97032 1.21060 0.96947 0.93039 0.99011 0.92218 0.92785 0.93119 0.91786 0.91353 0.92083 0.92718 0.90636 0.89872 0.82866 0.84666 0.88465 0.91226 0.98114 0.89886 0.93958 0.95879 0.95238 0.86045 0.84418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.91 71.98 0.71 -0.93 16 2 C -0.12 -1.32 5.93 30.59 0.18 -1.14 16 3 C -0.11 -1.47 5.20 30.59 0.16 -1.31 16 4 C -0.07 -0.98 5.34 29.85 0.16 -0.82 16 5 C -0.12 -2.47 5.13 -19.85 -0.10 -2.57 16 6 C -0.08 -1.57 9.69 22.25 0.22 -1.36 16 7 C -0.16 -4.19 9.99 22.37 0.22 -3.97 16 8 C 0.10 3.20 6.67 22.51 0.15 3.35 16 9 O -0.32 -11.41 9.86 -92.41 -0.91 -12.32 16 10 C 0.09 3.31 2.74 31.78 0.09 3.39 16 11 H 0.09 3.18 6.25 -2.38 -0.01 3.17 16 12 C -0.12 -4.86 6.81 31.98 0.22 -4.65 16 13 C 0.16 7.79 5.89 86.86 0.51 8.30 16 14 N -0.62 -33.49 3.39 -691.98 -2.35 -35.84 16 15 C -0.25 -14.24 10.27 84.03 0.86 -13.37 16 16 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 17 C -0.06 -3.65 5.49 84.86 0.47 -3.19 16 18 N -0.95 -56.49 10.09 21.65 0.22 -56.27 16 19 Si 0.99 45.96 29.55 68.60 2.03 47.99 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 23 C 0.12 5.34 6.81 86.73 0.59 5.93 16 24 C -0.22 -6.28 8.91 22.37 0.20 -6.08 16 25 C -0.08 -1.93 9.69 22.25 0.22 -1.71 16 26 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 0.81 8.14 -2.38 -0.02 0.80 16 33 H 0.08 0.99 8.08 -2.39 -0.02 0.97 16 34 H 0.08 0.96 8.08 -2.39 -0.02 0.94 16 35 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 36 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 37 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 38 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 39 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 40 H 0.08 4.70 5.87 -2.39 -0.01 4.68 16 41 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 42 H 0.02 1.08 8.06 -2.39 -0.02 1.07 16 43 H 0.03 1.29 7.82 -2.39 -0.02 1.27 16 44 H 0.12 3.65 5.63 -2.91 -0.02 3.64 16 45 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -65.48 360.23 4.78 -60.71 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.94 Total: 15.87 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: 4.85 Total: -20.13 kcal Atomic # 7 Polarization: -89.98 SS G_CDS: -2.13 Total: -92.11 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -0.91 Total: -12.32 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -65.48 4.78 -60.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227623501.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.695 kcal (2) G-P(sol) polarization free energy of solvation -65.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds