Wall clock time and date at job start Tue Mar 31 2020 06:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47111 * 2 1 4 4 C 1.53000 * 109.47111 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.46998 * 179.97438 * 4 3 2 6 6 C 1.38268 * 119.94391 * 270.25513 * 5 4 3 7 7 C 1.38147 * 120.05293 * 180.25636 * 6 5 4 8 8 C 1.38724 * 119.94305 * 359.46817 * 7 6 5 9 9 O 1.35902 * 120.05607 * 180.29878 * 8 7 6 10 10 C 1.42894 * 117.00323 * 174.51849 * 9 8 7 11 11 H 1.08999 * 110.64553 * 326.90313 * 10 9 8 12 12 C 1.55161 * 110.72189 * 203.75870 * 10 9 8 13 13 C 1.54914 * 101.58072 * 206.13612 * 12 10 9 14 14 N 1.47419 * 104.83627 * 37.00771 * 13 12 10 15 15 C 1.36940 * 125.65104 * 155.90559 * 14 13 12 16 16 H 1.08000 * 119.99758 * 179.97438 * 15 14 13 17 17 C 1.38810 * 119.99534 * 359.97438 * 15 14 13 18 18 N 1.31612 * 120.00607 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99669 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47245 * 59.99429 * 19 17 15 21 21 H 1.48500 * 109.46994 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46822 * 300.00089 * 19 17 15 23 23 C 1.47025 * 108.70293 * 335.87333 * 14 13 12 24 24 C 1.38733 * 119.89153 * 0.27648 * 8 7 6 25 25 C 1.38139 * 119.94422 * 359.97438 * 24 8 7 26 26 H 1.09001 * 109.46815 * 60.00441 * 1 2 3 27 27 H 1.09000 * 109.46891 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46944 * 300.00182 * 1 2 3 29 29 H 1.08999 * 109.47282 * 240.00048 * 2 1 3 30 30 H 1.09001 * 109.46815 * 119.99559 * 2 1 3 31 31 H 1.08993 * 109.47394 * 59.99726 * 3 2 1 32 32 H 1.09007 * 109.46912 * 299.99940 * 3 2 1 33 33 H 1.08999 * 109.47282 * 60.00048 * 4 3 2 34 34 H 1.08993 * 109.47142 * 299.99605 * 4 3 2 35 35 H 1.07997 * 119.97212 * 0.02562 * 6 5 4 36 36 H 1.08005 * 120.02488 * 179.73890 * 7 6 5 37 37 H 1.08993 * 111.00024 * 324.20675 * 12 10 9 38 38 H 1.08994 * 110.99984 * 88.02558 * 12 10 9 39 39 H 1.08998 * 110.36651 * 155.85058 * 13 12 10 40 40 H 1.09009 * 110.36345 * 278.16904 * 13 12 10 41 41 H 0.97002 * 120.00679 * 180.02562 * 18 17 15 42 42 H 1.08994 * 109.88520 * 241.63910 * 23 14 13 43 43 H 1.09000 * 109.88311 * 120.47567 * 23 14 13 44 44 H 1.07998 * 120.02774 * 180.02562 * 24 8 7 45 45 H 1.07998 * 119.97534 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0723 2.8634 -0.0013 6 6 4.2968 3.5155 -1.1997 7 6 4.7623 4.8162 -1.2029 8 6 4.9940 5.4717 -0.0025 9 8 5.4461 6.7533 -0.0030 10 6 5.5478 7.4059 1.2641 11 1 4.7642 7.0603 1.9384 12 6 5.4858 8.9470 1.0945 13 6 6.2628 9.4290 2.3450 14 7 7.3473 8.4455 2.5179 15 6 8.5339 8.6709 3.1633 16 1 9.2670 7.8813 3.2369 17 6 8.7941 9.9143 3.7229 18 7 7.9009 10.8766 3.6328 19 14 10.4130 10.2221 4.6028 20 1 11.5383 10.0115 3.6570 21 1 10.4443 11.6183 5.1075 22 1 10.5429 9.2806 5.7439 23 6 6.9437 7.1822 1.8831 24 6 4.7629 4.8170 1.1986 25 6 4.3024 3.5146 1.1965 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6766 1.9564 -0.8901 33 1 3.9330 0.9288 -0.8908 34 1 3.9337 0.9287 0.8891 35 1 4.1117 3.0064 -2.1339 36 1 4.9415 5.3237 -2.1393 37 1 5.9871 9.2596 0.1786 38 1 4.4551 9.3009 1.1138 39 1 6.6759 10.4233 2.1750 40 1 5.6110 9.4324 3.2187 41 1 8.0829 11.7456 4.0235 42 1 6.8952 6.3906 2.6308 43 1 7.6566 6.9150 1.1031 44 1 4.9421 5.3253 2.1345 45 1 4.1219 3.0046 2.1313 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227623504.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:49 Heat of formation + Delta-G solvation = -7.930216 kcal Electronic energy + Delta-G solvation = -22310.535492 eV Core-core repulsion = 19100.180225 eV Total energy + Delta-G solvation = -3210.355268 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.11957 -38.24477 -36.42647 -35.44790 -32.44751 -31.69013 -30.93931 -29.35080 -28.06132 -27.27410 -24.69833 -23.94718 -22.84125 -21.52626 -20.98139 -20.25584 -19.93567 -17.99235 -17.04303 -16.03129 -15.50382 -15.33843 -15.10723 -14.69928 -14.40538 -14.22766 -13.82505 -13.71980 -13.48254 -13.13959 -12.84474 -12.70975 -12.45399 -12.34747 -11.86218 -11.67777 -11.57622 -11.44270 -11.28103 -11.03745 -10.93378 -10.86278 -10.79486 -10.68150 -10.38041 -10.21046 -10.02114 -9.82017 -9.62181 -8.91639 -8.69414 -7.87485 -6.90007 -5.69577 -3.11995 1.42760 1.51985 3.39398 3.42947 3.44399 3.52801 3.82306 4.46532 4.55022 4.65267 4.82914 4.87352 4.95926 5.05606 5.12711 5.22538 5.31765 5.41282 5.43213 5.46060 5.46785 5.49444 5.55561 5.59891 5.64087 5.71767 5.75122 5.83492 5.87680 6.00279 6.10352 6.11863 6.24867 6.37524 6.39802 6.48000 6.49012 6.62341 6.63733 6.68070 6.95913 7.41578 7.57432 7.73467 7.81839 8.29944 9.16897 9.77193 10.40579 11.34719 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.032638 B = 0.002646 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.700054 B =10577.583838 C =10827.780053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.115 4.115 4 C -0.073 4.073 5 C -0.132 4.132 6 C -0.080 4.080 7 C -0.157 4.157 8 C 0.138 3.862 9 O -0.305 6.305 10 C 0.069 3.931 11 H 0.077 0.923 12 C -0.136 4.136 13 C 0.153 3.847 14 N -0.601 5.601 15 C -0.224 4.224 16 H 0.078 0.922 17 C -0.011 4.011 18 N -0.924 5.924 19 Si 0.918 3.082 20 H -0.284 1.284 21 H -0.289 1.289 22 H -0.285 1.285 23 C 0.120 3.880 24 C -0.205 4.205 25 C -0.076 4.076 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.114 0.886 40 H 0.016 0.984 41 H 0.254 0.746 42 H 0.025 0.975 43 H 0.035 0.965 44 H 0.132 0.868 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.718 -17.533 -8.343 23.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.153 4.153 4 C -0.110 4.110 5 C -0.132 4.132 6 C -0.098 4.098 7 C -0.176 4.176 8 C 0.092 3.908 9 O -0.218 6.218 10 C 0.013 3.987 11 H 0.095 0.905 12 C -0.175 4.175 13 C 0.028 3.972 14 N -0.328 5.328 15 C -0.352 4.352 16 H 0.096 0.904 17 C -0.206 4.206 18 N -0.572 5.572 19 Si 0.748 3.252 20 H -0.211 1.211 21 H -0.215 1.215 22 H -0.212 1.212 23 C -0.007 4.007 24 C -0.224 4.224 25 C -0.094 4.094 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.132 0.868 40 H 0.034 0.966 41 H 0.065 0.935 42 H 0.043 0.957 43 H 0.053 0.947 44 H 0.149 0.851 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.545 -17.225 -8.382 22.898 hybrid contribution 0.792 0.095 0.766 1.105 sum -11.753 -17.130 -7.616 22.126 Atomic orbital electron populations 1.21780 0.95986 1.01431 1.01884 1.21558 0.95805 0.97029 1.01926 1.21631 0.94749 0.96438 1.02450 1.20502 0.95278 0.92748 1.02487 1.19693 1.03833 0.96625 0.93086 1.20750 0.97991 0.93592 0.97491 1.20414 1.05473 0.95338 0.96348 1.19132 0.93090 0.84699 0.93918 1.86157 1.79527 1.22870 1.33229 1.23676 0.98245 0.94069 0.82714 0.90519 1.23209 1.00833 0.90998 1.02458 1.22000 0.87712 0.97122 0.90383 1.44374 1.16695 1.06971 1.64797 1.19040 0.92070 0.96890 1.27205 0.90415 1.24803 0.98620 0.96047 1.01130 1.69742 1.33981 1.03515 1.49963 0.86107 0.82728 0.77032 0.79361 1.21067 1.21492 1.21160 1.21688 0.92818 0.90723 0.95461 1.21401 1.06630 0.96613 0.97755 1.20792 0.97335 0.93790 0.97507 0.92769 0.92922 0.92741 0.92102 0.92072 0.91875 0.91901 0.91380 0.91356 0.85909 0.85466 0.90801 0.91543 0.86844 0.96577 0.93532 0.95671 0.94686 0.85068 0.86188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.61 16 2 C -0.13 -0.84 5.93 -26.73 -0.16 -1.00 16 3 C -0.12 -0.91 5.20 -26.73 -0.14 -1.05 16 4 C -0.07 -0.63 5.34 -27.88 -0.15 -0.78 16 5 C -0.13 -1.50 5.14 -104.60 -0.54 -2.04 16 6 C -0.08 -0.93 9.69 -39.60 -0.38 -1.31 16 7 C -0.16 -2.15 9.99 -39.44 -0.39 -2.54 16 8 C 0.14 2.19 6.67 -39.22 -0.26 1.93 16 9 O -0.31 -5.52 9.86 -19.43 -0.19 -5.71 16 10 C 0.07 1.31 2.74 -24.89 -0.07 1.24 16 11 H 0.08 1.34 6.26 -51.93 -0.33 1.02 16 12 C -0.14 -2.69 6.81 -24.58 -0.17 -2.86 16 13 C 0.15 3.72 5.89 -2.53 -0.01 3.71 16 14 N -0.60 -15.73 3.39 -170.07 -0.58 -16.31 16 15 C -0.22 -6.32 10.27 -15.06 -0.15 -6.48 16 16 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 17 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 18 N -0.92 -26.84 10.09 55.49 0.56 -26.28 16 19 Si 0.92 22.11 29.55 -169.99 -5.02 17.09 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 23 C 0.12 2.63 6.80 -3.06 -0.02 2.61 16 24 C -0.21 -3.03 8.90 -39.43 -0.35 -3.38 16 25 C -0.08 -0.95 9.69 -39.61 -0.38 -1.34 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.52 8.14 -51.92 -0.42 0.09 16 33 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 34 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 35 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.13 1.59 8.06 -52.48 -0.42 1.16 16 37 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.11 3.08 5.87 -51.93 -0.31 2.78 16 40 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 41 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.03 0.54 7.80 -51.93 -0.41 0.14 16 43 H 0.04 0.80 8.06 -51.93 -0.42 0.38 16 44 H 0.13 1.97 5.62 -52.49 -0.30 1.68 16 45 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 360.21 15.07 5.43 5.43 Total: -1.00 -29.97 360.21 -10.35 -40.32 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -7.63 Total: -0.24 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -2.91 Total: -14.30 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: -0.02 Total: -42.58 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.19 Total: -5.71 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.97 -10.35 -40.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227623504.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.385 kcal (2) G-P(sol) polarization free energy of solvation -29.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds