Wall clock time and date at job start Tue Mar 31 2020 06:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47111 * 2 1 4 4 C 1.53000 * 109.47111 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.46998 * 179.97438 * 4 3 2 6 6 C 1.38268 * 119.94391 * 270.25513 * 5 4 3 7 7 C 1.38147 * 120.05293 * 180.25636 * 6 5 4 8 8 C 1.38724 * 119.94305 * 359.46817 * 7 6 5 9 9 O 1.35902 * 120.05607 * 180.29878 * 8 7 6 10 10 C 1.42894 * 117.00323 * 174.51849 * 9 8 7 11 11 H 1.08999 * 110.64553 * 326.90313 * 10 9 8 12 12 C 1.55161 * 110.72189 * 203.75870 * 10 9 8 13 13 C 1.54914 * 101.58072 * 206.13612 * 12 10 9 14 14 N 1.47419 * 104.83627 * 37.00771 * 13 12 10 15 15 C 1.36940 * 125.65104 * 155.90559 * 14 13 12 16 16 H 1.08000 * 119.99758 * 179.97438 * 15 14 13 17 17 C 1.38810 * 119.99534 * 359.97438 * 15 14 13 18 18 N 1.31612 * 120.00607 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99669 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47245 * 59.99429 * 19 17 15 21 21 H 1.48500 * 109.46994 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46822 * 300.00089 * 19 17 15 23 23 C 1.47025 * 108.70293 * 335.87333 * 14 13 12 24 24 C 1.38733 * 119.89153 * 0.27648 * 8 7 6 25 25 C 1.38139 * 119.94422 * 359.97438 * 24 8 7 26 26 H 1.09001 * 109.46815 * 60.00441 * 1 2 3 27 27 H 1.09000 * 109.46891 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46944 * 300.00182 * 1 2 3 29 29 H 1.08999 * 109.47282 * 240.00048 * 2 1 3 30 30 H 1.09001 * 109.46815 * 119.99559 * 2 1 3 31 31 H 1.08993 * 109.47394 * 59.99726 * 3 2 1 32 32 H 1.09007 * 109.46912 * 299.99940 * 3 2 1 33 33 H 1.08999 * 109.47282 * 60.00048 * 4 3 2 34 34 H 1.08993 * 109.47142 * 299.99605 * 4 3 2 35 35 H 1.07997 * 119.97212 * 0.02562 * 6 5 4 36 36 H 1.08005 * 120.02488 * 179.73890 * 7 6 5 37 37 H 1.08993 * 111.00024 * 324.20675 * 12 10 9 38 38 H 1.08994 * 110.99984 * 88.02558 * 12 10 9 39 39 H 1.08998 * 110.36651 * 155.85058 * 13 12 10 40 40 H 1.09009 * 110.36345 * 278.16904 * 13 12 10 41 41 H 0.97002 * 120.00679 * 180.02562 * 18 17 15 42 42 H 1.08994 * 109.88520 * 241.63910 * 23 14 13 43 43 H 1.09000 * 109.88311 * 120.47567 * 23 14 13 44 44 H 1.07998 * 120.02774 * 180.02562 * 24 8 7 45 45 H 1.07998 * 119.97534 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0723 2.8634 -0.0013 6 6 4.2968 3.5155 -1.1997 7 6 4.7623 4.8162 -1.2029 8 6 4.9940 5.4717 -0.0025 9 8 5.4461 6.7533 -0.0030 10 6 5.5478 7.4059 1.2641 11 1 4.7642 7.0603 1.9384 12 6 5.4858 8.9470 1.0945 13 6 6.2628 9.4290 2.3450 14 7 7.3473 8.4455 2.5179 15 6 8.5339 8.6709 3.1633 16 1 9.2670 7.8813 3.2369 17 6 8.7941 9.9143 3.7229 18 7 7.9009 10.8766 3.6328 19 14 10.4130 10.2221 4.6028 20 1 11.5383 10.0115 3.6570 21 1 10.4443 11.6183 5.1075 22 1 10.5429 9.2806 5.7439 23 6 6.9437 7.1822 1.8831 24 6 4.7629 4.8170 1.1986 25 6 4.3024 3.5146 1.1965 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6766 1.9564 -0.8901 33 1 3.9330 0.9288 -0.8908 34 1 3.9337 0.9287 0.8891 35 1 4.1117 3.0064 -2.1339 36 1 4.9415 5.3237 -2.1393 37 1 5.9871 9.2596 0.1786 38 1 4.4551 9.3009 1.1138 39 1 6.6759 10.4233 2.1750 40 1 5.6110 9.4324 3.2187 41 1 8.0829 11.7456 4.0235 42 1 6.8952 6.3906 2.6308 43 1 7.6566 6.9150 1.1031 44 1 4.9421 5.3253 2.1345 45 1 4.1219 3.0046 2.1313 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227623504.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:49 Heat of formation + Delta-G solvation = -22.041410 kcal Electronic energy + Delta-G solvation = -22311.147400 eV Core-core repulsion = 19100.180225 eV Total energy + Delta-G solvation = -3210.967175 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.33156 -39.50779 -37.92667 -36.25852 -34.34381 -32.61519 -31.97240 -31.19848 -29.28024 -28.66969 -26.56667 -24.81738 -23.97906 -22.45230 -22.11002 -21.81252 -21.26020 -19.27224 -19.03580 -17.16170 -16.84207 -16.60986 -16.34575 -16.11360 -15.52871 -15.47503 -15.08925 -14.82010 -14.50130 -14.34769 -14.28363 -13.69966 -13.62377 -13.55875 -13.33041 -13.18188 -12.97560 -12.69027 -12.44770 -12.36357 -12.10118 -12.08526 -12.03210 -11.90498 -11.70334 -11.62470 -11.41303 -11.34663 -11.31526 -10.79397 -9.92701 -9.01387 -8.94432 -7.82724 -5.28824 0.41594 0.48185 1.45486 1.49100 1.55622 2.17640 2.48051 2.80750 3.27828 3.57967 3.64344 3.85512 3.88021 3.91531 3.94571 4.06592 4.15455 4.24370 4.38444 4.41387 4.47887 4.50283 4.56784 4.64962 4.76603 4.83248 4.85998 4.88928 4.92737 4.98331 5.00884 5.06226 5.15710 5.21333 5.35317 5.38647 5.41528 5.42798 5.47137 5.52703 5.55229 5.71386 5.74906 5.92749 6.23396 6.50452 7.04143 7.68989 8.32232 9.19376 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.032638 B = 0.002646 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.700054 B =10577.583838 C =10827.780053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.123 4.123 3 C -0.112 4.112 4 C -0.070 4.070 5 C -0.123 4.123 6 C -0.077 4.077 7 C -0.162 4.162 8 C 0.103 3.897 9 O -0.317 6.317 10 C 0.088 3.912 11 H 0.092 0.908 12 C -0.123 4.123 13 C 0.155 3.845 14 N -0.623 5.623 15 C -0.247 4.247 16 H 0.079 0.921 17 C -0.064 4.064 18 N -0.947 5.947 19 Si 0.985 3.015 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.277 1.277 23 C 0.119 3.881 24 C -0.217 4.217 25 C -0.083 4.083 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.154 0.846 36 H 0.135 0.865 37 H 0.069 0.931 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.001 0.999 41 H 0.251 0.749 42 H 0.030 0.970 43 H 0.023 0.977 44 H 0.122 0.878 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.428 -19.803 -9.106 25.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.161 4.161 3 C -0.149 4.149 4 C -0.107 4.107 5 C -0.124 4.124 6 C -0.095 4.095 7 C -0.181 4.181 8 C 0.058 3.942 9 O -0.231 6.231 10 C 0.031 3.969 11 H 0.110 0.890 12 C -0.162 4.162 13 C 0.030 3.970 14 N -0.351 5.351 15 C -0.375 4.375 16 H 0.097 0.903 17 C -0.256 4.256 18 N -0.596 5.596 19 Si 0.812 3.188 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.203 1.203 23 C -0.007 4.007 24 C -0.236 4.236 25 C -0.101 4.101 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.171 0.829 36 H 0.153 0.847 37 H 0.088 0.912 38 H 0.115 0.885 39 H 0.101 0.899 40 H 0.019 0.981 41 H 0.060 0.940 42 H 0.048 0.952 43 H 0.041 0.959 44 H 0.140 0.860 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.269 -19.529 -9.162 25.326 hybrid contribution 0.960 0.660 0.955 1.506 sum -12.309 -18.869 -8.207 23.977 Atomic orbital electron populations 1.21793 0.95870 1.01867 1.01710 1.21538 0.95905 0.96188 1.02444 1.21585 0.94147 0.97212 1.01974 1.20557 0.95636 0.90907 1.03643 1.20077 1.01951 0.97811 0.92519 1.21120 0.96657 0.92746 0.98967 1.20667 1.05298 0.96193 0.95929 1.19437 0.95360 0.84140 0.95279 1.86106 1.80525 1.24351 1.32101 1.23328 0.96551 0.93531 0.83484 0.89021 1.23022 1.01707 0.91745 0.99702 1.21785 0.87498 0.95789 0.91901 1.44665 1.16647 1.08846 1.64901 1.19397 0.93157 0.97276 1.27698 0.90316 1.25680 1.02063 0.95812 1.02081 1.69985 1.35562 1.03582 1.50504 0.85060 0.78713 0.76693 0.78284 1.20315 1.21529 1.20305 1.21770 0.94566 0.89254 0.95072 1.21426 1.07509 0.97657 0.97023 1.21058 0.96921 0.93064 0.99018 0.92785 0.92219 0.93117 0.91352 0.91787 0.92715 0.92081 0.89876 0.90629 0.82868 0.84666 0.91228 0.88467 0.89885 0.98119 0.93955 0.95234 0.95870 0.86049 0.84418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.91 71.98 0.71 -0.93 16 2 C -0.12 -1.32 5.93 30.60 0.18 -1.14 16 3 C -0.11 -1.46 5.20 30.60 0.16 -1.31 16 4 C -0.07 -0.98 5.34 29.85 0.16 -0.82 16 5 C -0.12 -2.47 5.14 -19.85 -0.10 -2.57 16 6 C -0.08 -1.57 9.69 22.26 0.22 -1.36 16 7 C -0.16 -4.19 9.99 22.36 0.22 -3.97 16 8 C 0.10 3.20 6.67 22.50 0.15 3.35 16 9 O -0.32 -11.42 9.86 -92.44 -0.91 -12.34 16 10 C 0.09 3.31 2.74 31.79 0.09 3.40 16 11 H 0.09 3.18 6.26 -2.39 -0.01 3.16 16 12 C -0.12 -4.87 6.81 31.99 0.22 -4.65 16 13 C 0.16 7.79 5.89 86.86 0.51 8.30 16 14 N -0.62 -33.49 3.39 -691.97 -2.35 -35.84 16 15 C -0.25 -14.24 10.27 84.03 0.86 -13.37 16 16 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 17 C -0.06 -3.65 5.49 84.86 0.47 -3.18 16 18 N -0.95 -56.49 10.09 21.65 0.22 -56.27 16 19 Si 0.99 45.95 29.55 68.60 2.03 47.98 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 23 C 0.12 5.35 6.80 86.73 0.59 5.94 16 24 C -0.22 -6.28 8.90 22.36 0.20 -6.08 16 25 C -0.08 -1.93 9.69 22.25 0.22 -1.71 16 26 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.08 0.96 8.09 -2.39 -0.02 0.94 16 34 H 0.08 0.99 8.08 -2.39 -0.02 0.97 16 35 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 36 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 37 H 0.07 2.79 8.14 -2.39 -0.02 2.78 16 38 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 39 H 0.08 4.70 5.87 -2.39 -0.01 4.68 16 40 H 0.00 0.04 8.14 -2.38 -0.02 0.02 16 41 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 42 H 0.03 1.29 7.80 -2.39 -0.02 1.27 16 43 H 0.02 1.09 8.06 -2.39 -0.02 1.07 16 44 H 0.12 3.66 5.62 -2.91 -0.02 3.64 16 45 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -65.48 360.21 4.78 -60.70 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.94 Total: 15.87 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: 4.85 Total: -20.11 kcal Atomic # 7 Polarization: -89.98 SS G_CDS: -2.13 Total: -92.11 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: -0.91 Total: -12.34 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -65.48 4.78 -60.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227623504.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.657 kcal (2) G-P(sol) polarization free energy of solvation -65.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds