Wall clock time and date at job start Tue Mar 31 2020 05:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38292 * 119.97437 * 2 1 4 4 C 1.38240 * 120.11085 * 179.97438 * 3 2 1 5 5 C 1.38160 * 120.05726 * 0.02562 * 4 3 2 6 6 C 1.50706 * 120.02751 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.46942 * 300.01552 * 6 5 4 8 8 C 1.52999 * 109.47440 * 60.02149 * 6 5 4 9 9 C 1.38708 * 119.94720 * 359.97438 * 5 4 3 10 10 O 1.35904 * 120.06144 * 180.02562 * 9 5 4 11 11 C 1.42894 * 117.00036 * 185.58508 * 10 9 5 12 12 H 1.08999 * 110.78300 * 38.45695 * 11 10 9 13 13 C 1.55160 * 110.71937 * 161.69649 * 11 10 9 14 14 C 1.54902 * 101.58488 * 153.86429 * 13 11 10 15 15 N 1.47424 * 104.83193 * 322.98841 * 14 13 11 16 16 C 1.36937 * 125.65020 * 204.16119 * 15 14 13 17 17 H 1.08003 * 120.00033 * 179.97438 * 16 15 14 18 18 C 1.38811 * 119.99820 * 359.96429 * 16 15 14 19 19 N 1.31616 * 120.00241 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99909 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47298 * 89.99439 * 20 18 16 22 22 H 1.48498 * 109.47415 * 209.99586 * 20 18 16 23 23 H 1.48496 * 109.47216 * 329.99918 * 20 18 16 24 24 C 1.47023 * 108.70409 * 24.12841 * 15 14 13 25 25 C 1.38129 * 119.97184 * 180.29009 * 2 1 3 26 26 H 1.09002 * 109.47047 * 89.99710 * 1 2 3 27 27 H 1.08999 * 109.47486 * 210.00308 * 1 2 3 28 28 H 1.09004 * 109.47084 * 330.00791 * 1 2 3 29 29 H 1.08003 * 119.94432 * 359.97438 * 3 2 1 30 30 H 1.08004 * 119.97276 * 179.97438 * 4 3 2 31 31 H 1.09005 * 109.46948 * 180.02562 * 6 5 4 32 32 H 1.09005 * 109.46647 * 60.00614 * 7 6 5 33 33 H 1.09007 * 109.46866 * 179.97438 * 7 6 5 34 34 H 1.08993 * 109.47175 * 300.00321 * 7 6 5 35 35 H 1.08999 * 109.47343 * 179.97438 * 8 6 5 36 36 H 1.09004 * 109.46815 * 300.00396 * 8 6 5 37 37 H 1.08997 * 109.46945 * 59.99626 * 8 6 5 38 38 H 1.09000 * 111.00320 * 271.93903 * 13 11 10 39 39 H 1.09007 * 111.00269 * 35.78904 * 13 11 10 40 40 H 1.08995 * 110.36870 * 204.15259 * 14 13 11 41 41 H 1.09003 * 110.46093 * 81.87613 * 14 13 11 42 42 H 0.97005 * 119.99999 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.88220 * 239.52249 * 24 15 14 44 44 H 1.09001 * 109.88090 * 118.35599 * 24 15 14 45 45 H 1.08000 * 120.02421 * 0.02937 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0005 5 6 4.2751 0.0071 0.0005 6 6 5.7822 0.0115 0.0005 7 6 6.2901 0.7345 -1.2485 8 6 6.2902 0.7337 1.2500 9 6 3.5846 -1.1959 0.0005 10 8 4.2657 -2.3719 0.0011 11 6 3.4944 -3.5684 -0.1229 12 1 2.6709 -3.4269 -0.8228 13 6 4.3906 -4.7562 -0.5626 14 6 3.6086 -5.9645 0.0099 15 7 3.0707 -5.4900 1.2979 16 6 2.7245 -6.2831 2.3591 17 1 2.3380 -5.8368 3.2634 18 6 2.8702 -7.6609 2.2724 19 7 3.3405 -8.2049 1.1701 20 14 2.3986 -8.7428 3.7203 21 1 0.9714 -9.1355 3.6008 22 1 3.2482 -9.9607 3.7257 23 1 2.6011 -7.9924 4.9856 24 6 2.9682 -4.0240 1.2545 25 6 2.1970 -1.1966 -0.0061 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8901 0.5137 29 1 1.6566 2.1325 -0.0004 30 1 4.1176 2.1381 0.0001 31 1 6.1485 -1.0152 0.0001 32 1 5.9238 1.7612 -1.2481 33 1 7.3801 0.7381 -1.2483 34 1 5.9282 0.2200 -2.1386 35 1 7.3802 0.7364 1.2502 36 1 5.9238 1.7603 1.2504 37 1 5.9283 0.2185 2.1398 38 1 4.4579 -4.8136 -1.6490 39 1 5.3818 -4.6845 -0.1146 40 1 4.2784 -6.8099 0.1670 41 1 2.7961 -6.2447 -0.6605 42 1 3.4420 -9.1677 1.1095 43 1 3.5757 -3.5863 2.0467 44 1 1.9277 -3.7215 1.3724 45 1 1.6570 -2.1318 -0.0113 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227944337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:28 Heat of formation + Delta-G solvation = -4.224741 kcal Electronic energy + Delta-G solvation = -23436.425748 eV Core-core repulsion = 20226.231162 eV Total energy + Delta-G solvation = -3210.194586 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.33556 -38.15164 -36.11807 -35.67461 -32.35388 -31.37619 -29.98539 -29.10566 -27.62702 -27.11496 -26.43771 -24.58011 -22.86277 -21.91021 -20.46296 -20.08632 -19.67911 -17.40220 -17.04262 -16.15082 -15.48362 -15.17558 -14.75606 -14.29459 -14.09247 -13.87727 -13.71524 -13.68534 -13.36210 -13.13621 -12.91081 -12.46465 -12.27991 -12.12625 -11.95235 -11.79727 -11.63109 -11.47056 -11.36607 -11.03458 -10.99809 -10.83454 -10.59874 -10.55709 -10.34703 -10.20476 -10.03077 -9.82526 -9.61690 -8.69691 -8.57370 -7.86031 -6.89828 -5.69839 -3.11988 1.41383 1.60112 3.38543 3.43270 3.45326 3.53589 3.83099 4.46342 4.69505 4.83252 4.96514 5.07843 5.17006 5.25308 5.27940 5.33530 5.38197 5.46090 5.49922 5.58242 5.60715 5.61461 5.64179 5.71563 5.81706 5.83461 5.85693 5.87427 6.02677 6.17518 6.24527 6.28093 6.29640 6.41114 6.47841 6.50218 6.58048 6.60854 6.71546 6.71607 7.01939 7.41794 7.57780 7.74260 7.82644 8.29834 9.16881 9.77230 10.40601 11.34549 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019138 B = 0.004043 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.684064 B = 6923.350908 C = 7606.927605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.052 4.052 3 C -0.166 4.166 4 C -0.078 4.078 5 C -0.120 4.120 6 C -0.052 4.052 7 C -0.140 4.140 8 C -0.141 4.141 9 C 0.146 3.854 10 O -0.302 6.302 11 C 0.071 3.929 12 H 0.075 0.925 13 C -0.134 4.134 14 C 0.153 3.847 15 N -0.601 5.601 16 C -0.224 4.224 17 H 0.078 0.922 18 C -0.010 4.010 19 N -0.923 5.923 20 Si 0.916 3.084 21 H -0.288 1.288 22 H -0.289 1.289 23 H -0.281 1.281 24 C 0.119 3.881 25 C -0.206 4.206 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.117 0.883 30 H 0.122 0.878 31 H 0.087 0.913 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.114 0.886 41 H 0.016 0.984 42 H 0.253 0.747 43 H 0.034 0.966 44 H 0.025 0.975 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.061 18.611 -5.168 19.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.052 4.052 3 C -0.184 4.184 4 C -0.096 4.096 5 C -0.120 4.120 6 C -0.070 4.070 7 C -0.197 4.197 8 C -0.198 4.198 9 C 0.100 3.900 10 O -0.214 6.214 11 C 0.014 3.986 12 H 0.092 0.908 13 C -0.173 4.173 14 C 0.028 3.972 15 N -0.328 5.328 16 C -0.352 4.352 17 H 0.096 0.904 18 C -0.205 4.205 19 N -0.572 5.572 20 Si 0.747 3.253 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.206 1.206 24 C -0.008 4.008 25 C -0.224 4.224 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.135 0.865 30 H 0.140 0.860 31 H 0.105 0.895 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.131 0.869 41 H 0.034 0.966 42 H 0.064 0.936 43 H 0.052 0.948 44 H 0.043 0.957 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.269 18.337 -5.083 19.071 hybrid contribution -0.659 -0.601 0.711 1.140 sum 0.610 17.736 -4.372 18.278 Atomic orbital electron populations 1.20805 0.91338 1.02808 1.02236 1.19669 0.95811 0.92537 0.97230 1.20809 0.94034 0.97179 1.06374 1.20702 0.93750 0.96712 0.98427 1.19159 0.95537 0.90370 1.06963 1.19939 0.90531 1.01298 0.95232 1.21834 1.00480 0.99997 0.97410 1.21836 1.00478 0.99984 0.97519 1.18880 0.90300 0.86232 0.94592 1.86134 1.36125 1.12201 1.86968 1.23634 0.94616 0.82215 0.98104 0.90756 1.23179 0.99727 0.94418 0.99942 1.21993 0.96057 0.94063 0.85106 1.44375 1.75676 0.99065 1.13673 1.19087 1.35758 0.87933 0.92401 0.90400 1.24787 1.01532 0.96449 0.97731 1.69758 1.51495 1.10183 1.25725 0.86045 0.77815 0.80066 0.81417 1.21571 1.21552 1.20637 1.21733 0.97483 0.87414 0.94132 1.21283 0.93174 0.99080 1.08900 0.91207 0.91370 0.91607 0.86461 0.85966 0.89497 0.92891 0.92645 0.92694 0.92642 0.92897 0.92534 0.91548 0.90810 0.86879 0.96581 0.93605 0.94765 0.95743 0.85098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 10.01 36.00 0.36 -0.84 16 2 C -0.05 -0.69 5.88 -104.64 -0.62 -1.30 16 3 C -0.17 -1.98 9.70 -39.56 -0.38 -2.36 16 4 C -0.08 -0.94 8.71 -39.61 -0.35 -1.29 16 5 C -0.12 -1.67 4.79 -104.47 -0.50 -2.17 16 6 C -0.05 -0.64 3.06 -91.77 -0.28 -0.92 16 7 C -0.14 -1.45 9.01 37.16 0.33 -1.11 16 8 C -0.14 -1.54 9.01 37.16 0.33 -1.20 16 9 C 0.15 2.35 6.60 -39.22 -0.26 2.09 16 10 O -0.30 -5.38 8.64 -19.44 -0.17 -5.55 16 11 C 0.07 1.33 2.76 -24.89 -0.07 1.26 16 12 H 0.07 1.31 6.61 -51.93 -0.34 0.97 16 13 C -0.13 -2.62 6.81 -24.58 -0.17 -2.79 16 14 C 0.15 3.70 5.89 -2.53 -0.01 3.69 16 15 N -0.60 -15.63 3.39 -170.08 -0.58 -16.21 16 16 C -0.22 -6.30 10.27 -15.06 -0.15 -6.45 16 17 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 18 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 19 N -0.92 -26.74 10.09 55.49 0.56 -26.18 16 20 Si 0.92 22.07 29.55 -169.99 -5.02 17.04 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.12 2.60 6.50 -3.06 -0.02 2.58 16 25 C -0.21 -3.14 8.43 -39.43 -0.33 -3.47 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 28 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 29 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 30 H 0.12 1.19 7.10 -52.48 -0.37 0.81 16 31 H 0.09 1.24 6.99 -51.93 -0.36 0.88 16 32 H 0.05 0.48 7.39 -51.93 -0.38 0.10 16 33 H 0.05 0.51 8.14 -51.92 -0.42 0.08 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.51 7.39 -51.93 -0.38 0.12 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.11 3.06 5.87 -51.93 -0.31 2.76 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.03 0.78 8.06 -51.93 -0.42 0.37 16 44 H 0.02 0.53 7.42 -51.93 -0.39 0.14 16 45 H 0.13 2.06 5.31 -52.49 -0.28 1.78 16 LS Contribution 353.55 15.07 5.33 5.33 Total: -1.00 -29.87 353.55 -9.51 -39.38 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -7.42 Total: 0.84 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -2.21 Total: -14.66 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: -0.02 Total: -42.39 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -0.17 Total: -5.55 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.87 -9.51 -39.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227944337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.155 kcal (2) G-P(sol) polarization free energy of solvation -29.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds