Wall clock time and date at job start Tue Mar 31 2020 05:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38292 * 119.97437 * 2 1 4 4 C 1.38240 * 120.11085 * 179.97438 * 3 2 1 5 5 C 1.38160 * 120.05726 * 0.02562 * 4 3 2 6 6 C 1.50706 * 120.02751 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.46942 * 300.01552 * 6 5 4 8 8 C 1.52999 * 109.47440 * 60.02149 * 6 5 4 9 9 C 1.38708 * 119.94720 * 359.97438 * 5 4 3 10 10 O 1.35904 * 120.06144 * 180.02562 * 9 5 4 11 11 C 1.42894 * 117.00036 * 185.58508 * 10 9 5 12 12 H 1.08999 * 110.78300 * 38.45695 * 11 10 9 13 13 C 1.55160 * 110.71937 * 161.69649 * 11 10 9 14 14 C 1.54902 * 101.58488 * 153.86429 * 13 11 10 15 15 N 1.47424 * 104.83193 * 322.98841 * 14 13 11 16 16 C 1.36937 * 125.65020 * 204.16119 * 15 14 13 17 17 H 1.08003 * 120.00033 * 179.97438 * 16 15 14 18 18 C 1.38811 * 119.99820 * 359.96429 * 16 15 14 19 19 N 1.31616 * 120.00241 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99909 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47298 * 89.99439 * 20 18 16 22 22 H 1.48498 * 109.47415 * 209.99586 * 20 18 16 23 23 H 1.48496 * 109.47216 * 329.99918 * 20 18 16 24 24 C 1.47023 * 108.70409 * 24.12841 * 15 14 13 25 25 C 1.38129 * 119.97184 * 180.29009 * 2 1 3 26 26 H 1.09002 * 109.47047 * 89.99710 * 1 2 3 27 27 H 1.08999 * 109.47486 * 210.00308 * 1 2 3 28 28 H 1.09004 * 109.47084 * 330.00791 * 1 2 3 29 29 H 1.08003 * 119.94432 * 359.97438 * 3 2 1 30 30 H 1.08004 * 119.97276 * 179.97438 * 4 3 2 31 31 H 1.09005 * 109.46948 * 180.02562 * 6 5 4 32 32 H 1.09005 * 109.46647 * 60.00614 * 7 6 5 33 33 H 1.09007 * 109.46866 * 179.97438 * 7 6 5 34 34 H 1.08993 * 109.47175 * 300.00321 * 7 6 5 35 35 H 1.08999 * 109.47343 * 179.97438 * 8 6 5 36 36 H 1.09004 * 109.46815 * 300.00396 * 8 6 5 37 37 H 1.08997 * 109.46945 * 59.99626 * 8 6 5 38 38 H 1.09000 * 111.00320 * 271.93903 * 13 11 10 39 39 H 1.09007 * 111.00269 * 35.78904 * 13 11 10 40 40 H 1.08995 * 110.36870 * 204.15259 * 14 13 11 41 41 H 1.09003 * 110.46093 * 81.87613 * 14 13 11 42 42 H 0.97005 * 119.99999 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.88220 * 239.52249 * 24 15 14 44 44 H 1.09001 * 109.88090 * 118.35599 * 24 15 14 45 45 H 1.08000 * 120.02421 * 0.02937 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0005 5 6 4.2751 0.0071 0.0005 6 6 5.7822 0.0115 0.0005 7 6 6.2901 0.7345 -1.2485 8 6 6.2902 0.7337 1.2500 9 6 3.5846 -1.1959 0.0005 10 8 4.2657 -2.3719 0.0011 11 6 3.4944 -3.5684 -0.1229 12 1 2.6709 -3.4269 -0.8228 13 6 4.3906 -4.7562 -0.5626 14 6 3.6086 -5.9645 0.0099 15 7 3.0707 -5.4900 1.2979 16 6 2.7245 -6.2831 2.3591 17 1 2.3380 -5.8368 3.2634 18 6 2.8702 -7.6609 2.2724 19 7 3.3405 -8.2049 1.1701 20 14 2.3986 -8.7428 3.7203 21 1 0.9714 -9.1355 3.6008 22 1 3.2482 -9.9607 3.7257 23 1 2.6011 -7.9924 4.9856 24 6 2.9682 -4.0240 1.2545 25 6 2.1970 -1.1966 -0.0061 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8901 0.5137 29 1 1.6566 2.1325 -0.0004 30 1 4.1176 2.1381 0.0001 31 1 6.1485 -1.0152 0.0001 32 1 5.9238 1.7612 -1.2481 33 1 7.3801 0.7381 -1.2483 34 1 5.9282 0.2200 -2.1386 35 1 7.3802 0.7364 1.2502 36 1 5.9238 1.7603 1.2504 37 1 5.9283 0.2185 2.1398 38 1 4.4579 -4.8136 -1.6490 39 1 5.3818 -4.6845 -0.1146 40 1 4.2784 -6.8099 0.1670 41 1 2.7961 -6.2447 -0.6605 42 1 3.4420 -9.1677 1.1095 43 1 3.5757 -3.5863 2.0467 44 1 1.9277 -3.7215 1.3724 45 1 1.6570 -2.1318 -0.0113 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227944337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:27 Heat of formation + Delta-G solvation = -18.771971 kcal Electronic energy + Delta-G solvation = -23437.056564 eV Core-core repulsion = 20226.231162 eV Total energy + Delta-G solvation = -3210.825401 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.52837 -39.54614 -37.72001 -36.63674 -34.33250 -32.33069 -31.46509 -30.64725 -29.28862 -27.93807 -27.51378 -26.51492 -23.97814 -23.06415 -22.18041 -21.63894 -20.80763 -19.04092 -18.66467 -17.35544 -16.85676 -16.64877 -16.45732 -15.62799 -15.54119 -15.07655 -14.86793 -14.68060 -14.48540 -14.27485 -14.24547 -14.04356 -13.69320 -13.35203 -13.06707 -13.03356 -12.94635 -12.82906 -12.69795 -12.54064 -12.39627 -12.23290 -12.05420 -11.96875 -11.87884 -11.63205 -11.47964 -11.45491 -11.32600 -10.80576 -9.61005 -9.00905 -8.95226 -7.83523 -5.29441 0.39354 0.53592 1.45212 1.47256 1.56240 2.17793 2.47285 2.80068 3.27483 3.56688 3.63057 3.73959 3.86953 3.89632 3.98362 4.05626 4.19257 4.26426 4.37417 4.49149 4.51657 4.56220 4.58715 4.73708 4.75246 4.81171 4.82609 4.84745 4.90958 4.93902 4.99388 5.01896 5.04572 5.18921 5.29194 5.35517 5.39285 5.43821 5.50757 5.52050 5.67621 5.69734 5.70925 5.97260 6.22603 6.51400 7.03629 7.68250 8.31611 9.18846 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019138 B = 0.004043 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.684064 B = 6923.350908 C = 7606.927605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.061 4.061 3 C -0.158 4.158 4 C -0.075 4.075 5 C -0.126 4.126 6 C -0.054 4.054 7 C -0.134 4.134 8 C -0.137 4.137 9 C 0.111 3.889 10 O -0.311 6.311 11 C 0.090 3.910 12 H 0.087 0.913 13 C -0.120 4.120 14 C 0.156 3.844 15 N -0.622 5.622 16 C -0.248 4.248 17 H 0.078 0.922 18 C -0.060 4.060 19 N -0.947 5.947 20 Si 0.984 3.016 21 H -0.284 1.284 22 H -0.289 1.289 23 H -0.271 1.271 24 C 0.121 3.879 25 C -0.223 4.223 26 H 0.081 0.919 27 H 0.058 0.942 28 H 0.086 0.914 29 H 0.150 0.850 30 H 0.153 0.847 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.044 0.956 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.037 0.963 38 H 0.096 0.904 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.000 1.000 42 H 0.251 0.749 43 H 0.021 0.979 44 H 0.027 0.973 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.777 21.412 -5.291 22.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.061 4.061 3 C -0.176 4.176 4 C -0.093 4.093 5 C -0.127 4.127 6 C -0.072 4.072 7 C -0.191 4.191 8 C -0.194 4.194 9 C 0.066 3.934 10 O -0.225 6.225 11 C 0.033 3.967 12 H 0.104 0.896 13 C -0.159 4.159 14 C 0.031 3.969 15 N -0.349 5.349 16 C -0.376 4.376 17 H 0.096 0.904 18 C -0.253 4.253 19 N -0.596 5.596 20 Si 0.811 3.189 21 H -0.211 1.211 22 H -0.215 1.215 23 H -0.196 1.196 24 C -0.005 4.005 25 C -0.241 4.241 26 H 0.100 0.900 27 H 0.077 0.923 28 H 0.105 0.895 29 H 0.168 0.832 30 H 0.171 0.829 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.056 0.944 38 H 0.115 0.885 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.018 0.982 42 H 0.060 0.940 43 H 0.039 0.961 44 H 0.045 0.955 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.984 21.173 -5.211 21.827 hybrid contribution -0.596 -1.353 0.753 1.659 sum 0.388 19.820 -4.458 20.318 Atomic orbital electron populations 1.20849 0.89577 1.03418 1.03191 1.20014 0.97250 0.92223 0.96648 1.21229 0.94218 0.97914 1.04239 1.21071 0.94102 0.97033 0.97059 1.19470 0.96426 0.90266 1.06488 1.19959 0.89809 1.00373 0.97092 1.21793 1.01244 1.00456 0.95652 1.21811 1.01291 1.00508 0.95805 1.19225 0.90957 0.86099 0.97155 1.86097 1.36126 1.12455 1.87776 1.23272 0.94570 0.82746 0.96127 0.89557 1.22987 0.98726 0.92678 1.01491 1.21774 0.95281 0.95200 0.84635 1.44657 1.75821 1.00695 1.13757 1.19428 1.36131 0.88806 0.93237 0.90428 1.25643 1.01639 0.97600 1.00424 1.69995 1.52091 1.10116 1.27368 0.85010 0.77381 0.77964 0.78530 1.21051 1.21507 1.19643 1.21783 0.97490 0.85346 0.95872 1.21314 0.93025 0.99626 1.10169 0.90002 0.92288 0.89492 0.83233 0.82904 0.92267 0.91062 0.91447 0.93716 0.91396 0.90951 0.94403 0.88510 0.91226 0.89876 0.98164 0.93960 0.96148 0.95478 0.86512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.14 10.01 71.24 0.71 -1.43 16 2 C -0.06 -1.49 5.88 -19.88 -0.12 -1.61 16 3 C -0.16 -3.24 9.70 22.28 0.22 -3.02 16 4 C -0.07 -1.57 8.71 22.25 0.19 -1.38 16 5 C -0.13 -3.34 4.79 -19.77 -0.09 -3.44 16 6 C -0.05 -1.27 3.06 -11.54 -0.04 -1.31 16 7 C -0.13 -2.47 9.01 71.98 0.65 -1.83 16 8 C -0.14 -2.74 9.01 71.98 0.65 -2.09 16 9 C 0.11 3.56 6.60 22.51 0.15 3.71 16 10 O -0.31 -11.33 8.64 -92.47 -0.80 -12.13 16 11 C 0.09 3.43 2.76 31.79 0.09 3.52 16 12 H 0.09 3.09 6.61 -2.39 -0.02 3.08 16 13 C -0.12 -4.79 6.81 31.98 0.22 -4.57 16 14 C 0.16 7.86 5.89 86.85 0.51 8.37 16 15 N -0.62 -33.55 3.39 -692.00 -2.35 -35.90 16 16 C -0.25 -14.33 10.27 84.03 0.86 -13.47 16 17 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 18 C -0.06 -3.45 5.49 84.86 0.47 -2.99 16 19 N -0.95 -56.43 10.09 21.65 0.22 -56.21 16 20 Si 0.98 46.00 29.55 68.60 2.03 48.03 16 21 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 22 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 23 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 24 C 0.12 5.49 6.50 86.73 0.56 6.05 16 25 C -0.22 -6.76 8.43 22.37 0.19 -6.58 16 26 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.06 1.21 8.09 -2.39 -0.02 1.19 16 28 H 0.09 1.26 8.09 -2.39 -0.02 1.24 16 29 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 30 H 0.15 2.24 7.10 -2.91 -0.02 2.22 16 31 H 0.06 1.72 6.99 -2.38 -0.02 1.70 16 32 H 0.07 1.04 7.39 -2.38 -0.02 1.03 16 33 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.15 7.39 -2.38 -0.02 1.13 16 37 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 39 H 0.07 2.82 8.14 -2.38 -0.02 2.80 16 40 H 0.08 4.71 5.87 -2.39 -0.01 4.70 16 41 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 42 H 0.25 14.40 8.31 -92.70 -0.77 13.63 16 43 H 0.02 0.98 8.06 -2.39 -0.02 0.96 16 44 H 0.03 1.21 7.42 -2.39 -0.02 1.19 16 45 H 0.12 3.77 5.31 -2.91 -0.02 3.76 16 Total: -1.00 -66.45 353.55 5.27 -61.18 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.96 Total: 17.09 kcal Atomic # 6 Polarization: -27.27 SS G_CDS: 5.22 Total: -22.05 kcal Atomic # 7 Polarization: -89.99 SS G_CDS: -2.13 Total: -92.12 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: -0.80 Total: -12.13 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -66.45 5.27 -61.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227944337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.405 kcal (2) G-P(sol) polarization free energy of solvation -66.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds