Wall clock time and date at job start Tue Mar 31 2020 05:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38166 * 120.02847 * 2 1 4 4 C 1.38243 * 120.05495 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.94443 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47292 * 119.99764 * 5 4 3 7 7 C 1.52999 * 109.46828 * 239.99938 * 5 4 3 8 8 C 1.38293 * 120.11204 * 0.02562 * 4 3 2 9 9 C 1.38121 * 120.05217 * 359.67936 * 8 4 3 10 10 C 1.38707 * 120.02304 * 180.02562 * 2 1 3 11 11 O 1.35902 * 120.06300 * 359.97438 * 10 2 1 12 12 C 1.42895 * 117.00116 * 174.91184 * 11 10 2 13 13 H 1.08994 * 110.78439 * 321.82871 * 12 11 10 14 14 C 1.55160 * 110.71860 * 198.58837 * 12 11 10 15 15 C 1.55125 * 101.48787 * 205.97119 * 14 12 11 16 16 N 1.47432 * 104.72211 * 37.30052 * 15 14 12 17 17 C 1.36930 * 125.64951 * 155.81852 * 16 15 14 18 18 H 1.07999 * 120.00046 * 179.68988 * 17 16 15 19 19 C 1.38811 * 120.00010 * 359.96618 * 17 16 15 20 20 N 1.31618 * 120.00205 * 359.72519 * 19 17 16 21 21 Si 1.86800 * 119.99669 * 179.72836 * 19 17 16 22 22 H 1.48492 * 109.47776 * 59.99837 * 21 19 17 23 23 H 1.48507 * 109.47027 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47286 * 299.99374 * 21 19 17 25 25 C 1.47029 * 108.70000 * 335.54971 * 16 15 14 26 26 H 1.09007 * 109.47081 * 269.97913 * 1 2 3 27 27 H 1.08999 * 109.47044 * 29.97650 * 1 2 3 28 28 H 1.08997 * 109.46896 * 149.97988 * 1 2 3 29 29 H 1.08001 * 119.97063 * 0.04730 * 3 2 1 30 30 H 1.09002 * 109.47000 * 359.97438 * 5 4 3 31 31 H 1.08998 * 109.47040 * 179.97438 * 6 5 4 32 32 H 1.08996 * 109.47294 * 299.99920 * 6 5 4 33 33 H 1.09002 * 109.47200 * 59.99997 * 6 5 4 34 34 H 1.09006 * 109.47376 * 59.99738 * 7 5 4 35 35 H 1.08998 * 109.47270 * 179.97438 * 7 5 4 36 36 H 1.09002 * 109.47086 * 299.99649 * 7 5 4 37 37 H 1.07991 * 119.97110 * 179.97438 * 8 4 3 38 38 H 1.08006 * 120.02578 * 180.31867 * 9 8 4 39 39 H 1.08995 * 111.00706 * 324.21554 * 14 12 11 40 40 H 1.09008 * 111.00063 * 88.02523 * 14 12 11 41 41 H 1.09006 * 110.49952 * 278.45820 * 15 14 12 42 42 H 1.08997 * 110.34861 * 156.05849 * 15 14 12 43 43 H 0.96992 * 120.00134 * 180.02562 * 20 19 17 44 44 H 1.08994 * 109.87738 * 120.70622 * 25 16 15 45 45 H 1.08997 * 109.87961 * 241.71838 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5809 1.1968 -0.0005 5 6 4.3326 2.5030 0.0001 6 6 5.2125 2.5846 1.2490 7 6 5.2116 2.5861 -1.2495 8 6 4.2753 0.0009 -0.0016 9 6 3.5887 -1.1976 0.0045 10 6 2.2011 -1.2010 -0.0005 11 8 1.5234 -2.3789 -0.0005 12 6 2.2990 -3.5737 -0.1140 13 1 3.1302 -3.4310 -0.8044 14 6 1.4108 -4.7642 -0.5627 15 6 2.1943 -5.9703 0.0184 16 7 2.7107 -5.4925 1.3140 17 6 3.0477 -6.2836 2.3797 18 1 3.4234 -5.8354 3.2875 19 6 2.9118 -7.6622 2.2910 20 7 2.4539 -8.2086 1.1846 21 14 3.3786 -8.7419 3.7421 22 1 2.5509 -8.3748 4.9190 23 1 3.1415 -10.1664 3.3957 24 1 4.8143 -8.5431 4.0654 25 6 2.8101 -4.0262 1.2700 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5141 29 1 1.6585 2.1315 0.0008 30 1 3.6230 3.3305 0.0004 31 1 5.7565 3.5291 1.2491 32 1 4.5863 2.5254 2.1391 33 1 5.9220 1.7571 1.2482 34 1 4.5846 2.5280 -2.1393 35 1 5.7549 3.5310 -1.2494 36 1 5.9211 1.7586 -1.2502 37 1 5.3552 0.0040 -0.0024 38 1 4.1314 -2.1314 0.0089 39 1 0.4144 -4.6944 -0.1266 40 1 1.3559 -4.8226 -1.6499 41 1 3.0182 -6.2438 -0.6408 42 1 1.5275 -6.8198 0.1660 43 1 2.3586 -9.1719 1.1228 44 1 2.1924 -3.5892 2.0545 45 1 3.8481 -3.7210 1.4024 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230210830.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:36 Heat of formation + Delta-G solvation = -4.245044 kcal Electronic energy + Delta-G solvation = -23068.401456 eV Core-core repulsion = 19858.205990 eV Total energy + Delta-G solvation = -3210.195466 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.28256 -38.38633 -36.44932 -34.88815 -32.45003 -32.16364 -29.60246 -28.97113 -27.40916 -27.28628 -26.55247 -24.59363 -22.84589 -22.37217 -20.31396 -20.04465 -19.45571 -17.79730 -17.05522 -16.12983 -15.33923 -15.25715 -14.75706 -14.47147 -14.25084 -13.93796 -13.83377 -13.45137 -13.08220 -12.99604 -12.82836 -12.57034 -12.42832 -12.40037 -12.07748 -11.82343 -11.69175 -11.50670 -11.19892 -11.11243 -11.01485 -10.81743 -10.77437 -10.62671 -10.37984 -10.21338 -10.02387 -9.82273 -9.61599 -8.70567 -8.69045 -7.78364 -6.89894 -5.69579 -3.12032 1.43897 1.55474 3.39340 3.43068 3.44404 3.54671 3.82048 4.46472 4.58397 4.70619 4.93085 5.04540 5.06916 5.20879 5.26594 5.31159 5.33064 5.44065 5.46039 5.52203 5.58664 5.61094 5.64473 5.67651 5.75345 5.77340 5.81956 5.86431 5.97447 6.07472 6.09242 6.24451 6.31323 6.39869 6.48152 6.49095 6.51706 6.62834 6.66865 6.71309 7.00680 7.41528 7.57375 7.74164 7.82611 8.30089 9.16930 9.77228 10.40654 11.34642 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022803 B = 0.003471 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.627493 B = 8065.069272 C = 8694.971959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.122 4.122 3 C -0.084 4.084 4 C -0.122 4.122 5 C -0.049 4.049 6 C -0.145 4.145 7 C -0.144 4.144 8 C -0.079 4.079 9 C -0.201 4.201 10 C 0.136 3.864 11 O -0.302 6.302 12 C 0.070 3.930 13 H 0.075 0.925 14 C -0.134 4.134 15 C 0.153 3.847 16 N -0.601 5.601 17 C -0.224 4.224 18 H 0.078 0.922 19 C -0.010 4.010 20 N -0.924 5.924 21 Si 0.917 3.083 22 H -0.284 1.284 23 H -0.289 1.289 24 H -0.285 1.285 25 C 0.119 3.881 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.122 0.878 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.119 0.881 38 H 0.132 0.868 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.016 0.984 42 H 0.114 0.886 43 H 0.254 0.746 44 H 0.034 0.966 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.152 20.161 -5.205 20.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.123 4.123 3 C -0.102 4.102 4 C -0.122 4.122 5 C -0.068 4.068 6 C -0.202 4.202 7 C -0.201 4.201 8 C -0.098 4.098 9 C -0.219 4.219 10 C 0.090 3.910 11 O -0.215 6.215 12 C 0.014 3.986 13 H 0.093 0.907 14 C -0.173 4.173 15 C 0.028 3.972 16 N -0.328 5.328 17 C -0.353 4.353 18 H 0.096 0.904 19 C -0.205 4.205 20 N -0.572 5.572 21 Si 0.747 3.253 22 H -0.211 1.211 23 H -0.215 1.215 24 H -0.212 1.212 25 C -0.008 4.008 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.089 0.911 29 H 0.140 0.860 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.137 0.863 38 H 0.149 0.851 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.034 0.966 42 H 0.132 0.868 43 H 0.065 0.935 44 H 0.052 0.948 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 0.947 19.880 -5.131 20.553 hybrid contribution 0.654 -0.644 0.738 1.178 sum 1.601 19.235 -4.393 19.796 Atomic orbital electron populations 1.20576 0.90743 1.02441 1.02167 1.19221 0.96363 0.90368 1.06356 1.20678 0.93234 0.96534 0.99732 1.19638 0.93384 0.94609 1.04578 1.20005 0.96779 0.94456 0.95533 1.21866 0.99496 1.01551 0.97267 1.21865 0.99479 1.01547 0.97232 1.20696 0.99400 0.91259 0.98401 1.21403 0.93333 0.99513 1.07695 1.18914 0.90462 0.86187 0.95407 1.86141 1.36126 1.12157 1.87032 1.23634 0.94579 0.82278 0.98112 0.90732 1.23220 0.99782 0.94398 0.99892 1.22051 0.96146 0.94152 0.84872 1.44380 1.76503 0.99040 1.12902 1.19042 1.36320 0.87921 0.91971 0.90440 1.24794 1.01591 0.96443 0.97705 1.69739 1.51790 1.10185 1.25487 0.86112 0.78215 0.79517 0.81419 1.21069 1.21486 1.21159 1.21730 0.97547 0.87415 0.94081 0.91581 0.92153 0.91071 0.85991 0.90853 0.92709 0.92539 0.92462 0.92620 0.92707 0.92491 0.86280 0.85074 0.90790 0.91567 0.96579 0.86817 0.93535 0.94769 0.95739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.24 9.79 36.01 0.35 -0.89 16 2 C -0.12 -1.71 5.89 -104.47 -0.62 -2.33 16 3 C -0.08 -1.01 9.32 -39.61 -0.37 -1.38 16 4 C -0.12 -1.43 4.78 -104.60 -0.50 -1.93 16 5 C -0.05 -0.45 3.09 -91.77 -0.28 -0.74 16 6 C -0.14 -1.25 9.01 37.16 0.33 -0.91 16 7 C -0.14 -1.19 9.01 37.16 0.33 -0.86 16 8 C -0.08 -1.02 8.70 -39.60 -0.34 -1.37 16 9 C -0.20 -3.03 8.78 -39.43 -0.35 -3.37 16 10 C 0.14 2.19 6.60 -39.22 -0.26 1.93 16 11 O -0.30 -5.40 8.92 -19.43 -0.17 -5.57 16 12 C 0.07 1.32 2.76 -24.89 -0.07 1.25 16 13 H 0.07 1.31 6.59 -51.93 -0.34 0.97 16 14 C -0.13 -2.63 6.82 -24.46 -0.17 -2.80 16 15 C 0.15 3.71 5.90 -2.41 -0.01 3.70 16 16 N -0.60 -15.70 3.39 -169.93 -0.58 -16.28 16 17 C -0.22 -6.33 10.27 -15.06 -0.15 -6.49 16 18 H 0.08 2.12 7.83 -52.49 -0.41 1.70 16 19 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 20 N -0.92 -26.80 10.09 55.49 0.56 -26.24 16 21 Si 0.92 22.10 29.55 -169.99 -5.02 17.07 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 C 0.12 2.60 6.51 -3.06 -0.02 2.58 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 28 H 0.07 0.93 7.53 -51.93 -0.39 0.54 16 29 H 0.12 1.18 7.94 -52.49 -0.42 0.77 16 30 H 0.07 0.61 7.87 -51.93 -0.41 0.20 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.51 7.38 -51.93 -0.38 0.13 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.48 7.38 -51.93 -0.38 0.10 16 37 H 0.12 1.33 7.09 -52.49 -0.37 0.96 16 38 H 0.13 2.03 5.32 -52.48 -0.28 1.75 16 39 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 40 H 0.07 1.13 8.14 -51.92 -0.42 0.70 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.11 3.08 5.86 -51.93 -0.30 2.78 16 43 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.03 0.78 8.06 -51.93 -0.42 0.36 16 45 H 0.02 0.53 7.44 -51.93 -0.39 0.14 16 LS Contribution 353.84 15.07 5.33 5.33 Total: -1.00 -29.92 353.84 -9.53 -39.45 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -7.43 Total: 0.22 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -2.22 Total: -13.99 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: -0.02 Total: -42.52 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.17 Total: -5.57 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.92 -9.53 -39.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230210830.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.204 kcal (2) G-P(sol) polarization free energy of solvation -29.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds