Wall clock time and date at job start Tue Mar 31 2020 05:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38298 * 119.96844 * 2 1 4 4 C 1.38244 * 120.10616 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.96815 * 180.02562 * 4 3 2 6 6 C 1.38165 * 120.05836 * 0.29466 * 4 3 2 7 7 C 1.50700 * 120.02813 * 179.72744 * 6 4 3 8 8 N 1.46892 * 109.47468 * 89.99769 * 7 6 4 9 9 C 1.46848 * 111.00048 * 66.04552 * 8 7 6 10 10 C 1.53031 * 109.52754 * 185.83938 * 9 8 7 11 11 C 1.53117 * 109.28177 * 300.82475 * 10 9 8 12 12 C 1.53120 * 109.16118 * 57.64813 * 11 10 9 13 13 H 1.09002 * 109.49927 * 62.28776 * 12 11 10 14 14 C 1.50702 * 109.50358 * 182.36698 * 12 11 10 15 15 H 1.08000 * 119.99731 * 120.00033 * 14 12 11 16 16 C 1.37871 * 119.99780 * 300.00271 * 14 12 11 17 17 N 1.31522 * 119.99778 * 179.97438 * 16 14 12 18 18 Si 1.86794 * 120.00399 * 0.02562 * 16 14 12 19 19 H 1.48500 * 109.47279 * 89.99906 * 18 16 14 20 20 H 1.48503 * 109.47494 * 209.99597 * 18 16 14 21 21 H 1.48497 * 109.47370 * 330.00116 * 18 16 14 22 22 C 1.46845 * 111.00648 * 190.25606 * 8 7 6 23 23 C 1.38710 * 119.94359 * 359.43357 * 6 4 3 24 24 O 1.35896 * 120.05943 * 180.31320 * 23 6 4 25 25 C 1.38116 * 119.97422 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.47239 * 90.00137 * 1 2 3 27 27 H 1.08996 * 109.46846 * 210.00104 * 1 2 3 28 28 H 1.08994 * 109.47312 * 330.00023 * 1 2 3 29 29 H 1.07993 * 119.94286 * 359.97438 * 3 2 1 30 30 H 1.09002 * 109.47152 * 89.99936 * 5 4 3 31 31 H 1.09001 * 109.46980 * 330.00036 * 5 4 3 32 32 H 1.09004 * 109.47113 * 210.00017 * 5 4 3 33 33 H 1.09002 * 109.47076 * 210.00225 * 7 6 4 34 34 H 1.09005 * 109.46792 * 329.99662 * 7 6 4 35 35 H 1.09003 * 109.46063 * 305.86151 * 9 8 7 36 36 H 1.09007 * 109.45993 * 65.82404 * 9 8 7 37 37 H 1.09003 * 109.50452 * 60.76505 * 10 9 8 38 38 H 1.08999 * 109.50677 * 180.87776 * 10 9 8 39 39 H 1.08996 * 109.52374 * 177.56256 * 11 10 9 40 40 H 1.09007 * 109.51907 * 297.68621 * 11 10 9 41 41 H 0.96991 * 119.99805 * 180.02562 * 17 16 14 42 42 H 1.08999 * 109.45960 * 294.18126 * 22 8 7 43 43 H 1.09009 * 109.46010 * 54.14604 * 22 8 7 44 44 H 0.96705 * 114.00663 * 270.23370 * 24 23 6 45 45 H 1.08000 * 120.02691 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1981 0.0000 4 6 3.5803 1.2014 0.0005 5 6 4.3299 2.5087 0.0011 6 6 4.2752 0.0072 -0.0051 7 6 5.7822 0.0117 -0.0107 8 7 6.2771 0.0097 1.3723 9 6 5.9340 -1.2459 2.0522 10 6 6.3345 -1.1553 3.5264 11 6 7.8399 -0.8940 3.6262 12 6 8.1777 0.3934 2.8692 13 1 7.6633 1.2345 3.3341 14 6 9.6659 0.6272 2.9132 15 1 10.2320 0.6774 1.9949 16 6 10.3045 0.7770 4.1259 17 7 11.6034 0.9805 4.1643 18 14 9.3255 0.6894 5.7143 19 1 9.2821 -0.7159 6.1922 20 1 9.9737 1.5421 6.7430 21 1 7.9426 1.1723 5.4707 22 6 7.7238 0.2579 1.4141 23 6 3.5846 -1.1957 0.0006 24 8 4.2658 -2.3716 0.0016 25 6 2.1970 -1.1964 0.0005 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5138 29 1 1.6564 2.1325 -0.0004 30 1 4.5102 2.8237 1.0289 31 1 3.7388 3.2668 -0.5128 32 1 5.2829 2.3813 -0.5124 33 1 6.1462 -0.8759 -0.5282 34 1 6.1409 0.9041 -0.5237 35 1 4.8602 -1.4177 1.9775 36 1 6.4674 -2.0715 1.5810 37 1 5.7911 -0.3386 4.0017 38 1 6.0939 -2.0931 4.0272 39 1 8.1222 -0.7857 4.6734 40 1 8.3846 -1.7296 3.1867 41 1 12.0527 1.0855 5.0174 42 1 8.2487 -0.5747 0.9459 43 1 7.9500 1.1785 0.8759 44 1 4.4631 -2.7127 -0.8816 45 1 1.6571 -2.1318 0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231846093.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:34 Heat of formation + Delta-G solvation = -25.719544 kcal Electronic energy + Delta-G solvation = -23816.785908 eV Core-core repulsion = 20605.659237 eV Total energy + Delta-G solvation = -3211.126671 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.33945 -38.12160 -37.04458 -34.66975 -33.08037 -31.85305 -30.70676 -30.14304 -28.18179 -27.08978 -24.90584 -24.68574 -22.37094 -21.86924 -21.18841 -19.94382 -18.76710 -17.86567 -16.68842 -16.39737 -15.95383 -15.51066 -14.93750 -14.20463 -14.13033 -13.93487 -13.67012 -13.50849 -13.29942 -13.09193 -12.93870 -12.71360 -12.61561 -12.55931 -12.15672 -12.07216 -11.67069 -11.43641 -11.19484 -11.13571 -10.96574 -10.90455 -10.48335 -10.29060 -9.97324 -9.89604 -9.62300 -9.04479 -8.86567 -8.55343 -8.48836 -8.44162 -7.69010 -6.02857 -4.01502 1.21123 1.29200 3.33168 3.43684 3.48159 3.50518 4.13043 4.47203 4.60514 4.69308 4.74103 4.96570 5.08773 5.22724 5.29730 5.31390 5.38401 5.42756 5.61507 5.61769 5.66600 5.70709 5.76410 5.86656 5.90126 5.98047 6.04886 6.17363 6.24157 6.27967 6.34508 6.39277 6.45861 6.47331 6.60158 6.67190 6.71699 6.83385 6.90450 6.93624 7.26973 7.50833 7.61957 7.70537 7.71894 7.94182 8.56871 9.00359 9.60559 11.10450 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.025572 B = 0.004152 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.679546 B = 6741.641856 C = 6901.490836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.074 4.074 3 C -0.134 4.134 4 C -0.044 4.044 5 C -0.115 4.115 6 C -0.101 4.101 7 C 0.096 3.904 8 N -0.533 5.533 9 C 0.070 3.930 10 C -0.120 4.120 11 C -0.121 4.121 12 C 0.021 3.979 13 H 0.035 0.965 14 C -0.512 4.512 15 H 0.072 0.928 16 C 0.070 3.930 17 N -0.904 5.904 18 Si 0.888 3.112 19 H -0.280 1.280 20 H -0.299 1.299 21 H -0.263 1.263 22 C 0.078 3.922 23 C 0.118 3.882 24 O -0.492 6.492 25 C -0.157 4.157 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.121 0.879 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.036 0.964 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.028 0.972 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.044 0.956 40 H 0.055 0.945 41 H 0.263 0.737 42 H 0.025 0.975 43 H 0.065 0.935 44 H 0.384 0.616 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.925 -2.636 -10.821 23.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.075 4.075 3 C -0.152 4.152 4 C -0.045 4.045 5 C -0.171 4.171 6 C -0.102 4.102 7 C -0.032 4.032 8 N -0.257 5.257 9 C -0.058 4.058 10 C -0.158 4.158 11 C -0.159 4.159 12 C 0.002 3.998 13 H 0.053 0.947 14 C -0.551 4.551 15 H 0.090 0.910 16 C -0.131 4.131 17 N -0.542 5.542 18 Si 0.719 3.281 19 H -0.208 1.208 20 H -0.227 1.227 21 H -0.188 1.188 22 C -0.049 4.049 23 C 0.073 3.927 24 O -0.302 6.302 25 C -0.175 4.175 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.139 0.861 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.054 0.946 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.046 0.954 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.043 0.957 43 H 0.083 0.917 44 H 0.239 0.761 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -21.008 -2.167 -9.849 23.303 hybrid contribution 0.081 -0.974 0.090 0.981 sum -20.927 -3.141 -9.758 23.303 Atomic orbital electron populations 1.20768 0.91196 1.02759 1.02140 1.19690 0.95853 0.92657 0.99263 1.20894 0.93470 0.97462 1.03366 1.19652 0.93188 0.94919 0.96754 1.20851 0.99875 0.93099 1.03314 1.20034 0.96185 0.92000 1.02011 1.20887 0.89828 1.01002 0.91434 1.62024 1.16121 1.34705 1.12876 1.21975 1.00050 0.89549 0.94219 1.21668 0.98206 1.00327 0.95598 1.22012 0.93169 1.00702 0.99971 1.19144 0.96493 0.93294 0.90856 0.94738 1.21011 0.90558 1.49099 0.94409 0.90999 1.24975 0.94665 0.94450 0.99015 1.69904 1.08473 1.49883 1.25960 0.86821 0.80709 0.77355 0.83229 1.20762 1.22704 1.18832 1.22085 0.83831 0.99294 0.99688 1.18250 0.89538 0.84948 0.99974 1.84923 1.76284 1.36067 1.32913 1.21165 0.93281 0.98121 1.04964 0.91290 0.91649 0.91500 0.86081 0.90155 0.92096 0.90956 0.94621 0.89986 0.91173 0.95407 0.92175 0.93056 0.93745 0.92665 0.92747 0.95677 0.91662 0.76066 0.85910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 36.01 0.36 -0.50 16 2 C -0.07 -0.79 5.88 -104.64 -0.62 -1.41 16 3 C -0.13 -1.50 9.35 -39.56 -0.37 -1.87 16 4 C -0.04 -0.56 5.88 -104.65 -0.62 -1.18 16 5 C -0.12 -1.32 9.61 36.01 0.35 -0.98 16 6 C -0.10 -1.38 4.91 -104.47 -0.51 -1.89 16 7 C 0.10 1.42 4.54 -4.98 -0.02 1.40 16 8 N -0.53 -9.60 4.65 -236.12 -1.10 -10.69 16 9 C 0.07 1.26 4.40 -3.84 -0.02 1.24 16 10 C -0.12 -2.33 6.09 -26.65 -0.16 -2.49 16 11 C -0.12 -2.74 4.73 -26.61 -0.13 -2.87 16 12 C 0.02 0.51 1.85 -91.69 -0.17 0.35 16 13 H 0.03 0.88 7.21 -51.93 -0.37 0.50 16 14 C -0.51 -14.54 9.15 -34.44 -0.32 -14.86 16 15 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 16 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 17 N -0.90 -28.02 13.96 55.43 0.77 -27.25 16 18 Si 0.89 22.67 24.35 -169.99 -4.14 18.53 16 19 H -0.28 -7.01 6.89 56.52 0.39 -6.62 16 20 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 21 H -0.26 -6.53 6.53 56.52 0.37 -6.16 16 22 C 0.08 1.61 4.68 -3.84 -0.02 1.59 16 23 C 0.12 1.50 5.42 -39.22 -0.21 1.29 16 24 O -0.49 -5.86 10.83 -19.41 -0.21 -6.07 16 25 C -0.16 -1.79 9.64 -39.43 -0.38 -2.17 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 28 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 29 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 32 H 0.07 0.84 5.94 -51.93 -0.31 0.53 16 33 H 0.04 0.51 7.52 -51.93 -0.39 0.12 16 34 H 0.08 1.14 5.78 -51.93 -0.30 0.84 16 35 H 0.07 1.24 5.31 -51.93 -0.28 0.96 16 36 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.04 1.06 3.34 -51.93 -0.17 0.89 16 40 H 0.05 1.26 8.14 -51.92 -0.42 0.84 16 41 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 1.32 8.01 -51.92 -0.42 0.90 16 44 H 0.38 2.84 9.06 45.56 0.41 3.26 16 45 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 341.75 15.07 5.15 5.15 Total: -1.00 -32.10 341.75 -8.94 -41.04 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.49 Total: 1.70 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: -2.93 Total: -22.41 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: -0.32 Total: -37.94 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -0.21 Total: -6.07 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.14 Total: 18.53 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.10 -8.94 -41.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231846093.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.322 kcal (2) G-P(sol) polarization free energy of solvation -32.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds