Wall clock time and date at job start Tue Mar 31 2020 05:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38298 * 119.96844 * 2 1 4 4 C 1.38244 * 120.10616 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.96815 * 180.02562 * 4 3 2 6 6 C 1.38165 * 120.05836 * 0.29466 * 4 3 2 7 7 C 1.50700 * 120.02813 * 179.72744 * 6 4 3 8 8 N 1.46892 * 109.47468 * 89.99769 * 7 6 4 9 9 C 1.46848 * 111.00048 * 66.04552 * 8 7 6 10 10 C 1.53031 * 109.52754 * 185.83938 * 9 8 7 11 11 C 1.53117 * 109.28177 * 300.82475 * 10 9 8 12 12 C 1.53120 * 109.16118 * 57.64813 * 11 10 9 13 13 H 1.09002 * 109.49927 * 62.28776 * 12 11 10 14 14 C 1.50702 * 109.50358 * 182.36698 * 12 11 10 15 15 H 1.08000 * 119.99731 * 120.00033 * 14 12 11 16 16 C 1.37871 * 119.99780 * 300.00271 * 14 12 11 17 17 N 1.31522 * 119.99778 * 179.97438 * 16 14 12 18 18 Si 1.86794 * 120.00399 * 0.02562 * 16 14 12 19 19 H 1.48500 * 109.47279 * 89.99906 * 18 16 14 20 20 H 1.48503 * 109.47494 * 209.99597 * 18 16 14 21 21 H 1.48497 * 109.47370 * 330.00116 * 18 16 14 22 22 C 1.46845 * 111.00648 * 190.25606 * 8 7 6 23 23 C 1.38710 * 119.94359 * 359.43357 * 6 4 3 24 24 O 1.35896 * 120.05943 * 180.31320 * 23 6 4 25 25 C 1.38116 * 119.97422 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.47239 * 90.00137 * 1 2 3 27 27 H 1.08996 * 109.46846 * 210.00104 * 1 2 3 28 28 H 1.08994 * 109.47312 * 330.00023 * 1 2 3 29 29 H 1.07993 * 119.94286 * 359.97438 * 3 2 1 30 30 H 1.09002 * 109.47152 * 89.99936 * 5 4 3 31 31 H 1.09001 * 109.46980 * 330.00036 * 5 4 3 32 32 H 1.09004 * 109.47113 * 210.00017 * 5 4 3 33 33 H 1.09002 * 109.47076 * 210.00225 * 7 6 4 34 34 H 1.09005 * 109.46792 * 329.99662 * 7 6 4 35 35 H 1.09003 * 109.46063 * 305.86151 * 9 8 7 36 36 H 1.09007 * 109.45993 * 65.82404 * 9 8 7 37 37 H 1.09003 * 109.50452 * 60.76505 * 10 9 8 38 38 H 1.08999 * 109.50677 * 180.87776 * 10 9 8 39 39 H 1.08996 * 109.52374 * 177.56256 * 11 10 9 40 40 H 1.09007 * 109.51907 * 297.68621 * 11 10 9 41 41 H 0.96991 * 119.99805 * 180.02562 * 17 16 14 42 42 H 1.08999 * 109.45960 * 294.18126 * 22 8 7 43 43 H 1.09009 * 109.46010 * 54.14604 * 22 8 7 44 44 H 0.96705 * 114.00663 * 270.23370 * 24 23 6 45 45 H 1.08000 * 120.02691 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1981 0.0000 4 6 3.5803 1.2014 0.0005 5 6 4.3299 2.5087 0.0011 6 6 4.2752 0.0072 -0.0051 7 6 5.7822 0.0117 -0.0107 8 7 6.2771 0.0097 1.3723 9 6 5.9340 -1.2459 2.0522 10 6 6.3345 -1.1553 3.5264 11 6 7.8399 -0.8940 3.6262 12 6 8.1777 0.3934 2.8692 13 1 7.6633 1.2345 3.3341 14 6 9.6659 0.6272 2.9132 15 1 10.2320 0.6774 1.9949 16 6 10.3045 0.7770 4.1259 17 7 11.6034 0.9805 4.1643 18 14 9.3255 0.6894 5.7143 19 1 9.2821 -0.7159 6.1922 20 1 9.9737 1.5421 6.7430 21 1 7.9426 1.1723 5.4707 22 6 7.7238 0.2579 1.4141 23 6 3.5846 -1.1957 0.0006 24 8 4.2658 -2.3716 0.0016 25 6 2.1970 -1.1964 0.0005 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5138 29 1 1.6564 2.1325 -0.0004 30 1 4.5102 2.8237 1.0289 31 1 3.7388 3.2668 -0.5128 32 1 5.2829 2.3813 -0.5124 33 1 6.1462 -0.8759 -0.5282 34 1 6.1409 0.9041 -0.5237 35 1 4.8602 -1.4177 1.9775 36 1 6.4674 -2.0715 1.5810 37 1 5.7911 -0.3386 4.0017 38 1 6.0939 -2.0931 4.0272 39 1 8.1222 -0.7857 4.6734 40 1 8.3846 -1.7296 3.1867 41 1 12.0527 1.0855 5.0174 42 1 8.2487 -0.5747 0.9459 43 1 7.9500 1.1785 0.8759 44 1 4.4631 -2.7127 -0.8816 45 1 1.6571 -2.1318 0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231846093.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:33 Heat of formation + Delta-G solvation = -47.170068 kcal Electronic energy + Delta-G solvation = -23817.716072 eV Core-core repulsion = 20605.659237 eV Total energy + Delta-G solvation = -3212.056835 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.30790 -39.61974 -37.90618 -36.03315 -34.65930 -33.46144 -32.03377 -31.53441 -29.19861 -27.96361 -26.82089 -25.92402 -23.75786 -22.84656 -22.82772 -20.95728 -20.47495 -18.83577 -18.73440 -17.36240 -17.31484 -16.64591 -16.31293 -15.69210 -15.52352 -15.34413 -15.00911 -14.80965 -14.56540 -14.26699 -14.14535 -13.96235 -13.78262 -13.55561 -13.45329 -13.37539 -12.94912 -12.69280 -12.55387 -12.49780 -12.20048 -12.08306 -12.04155 -11.85993 -11.77050 -11.45910 -11.23116 -11.01244 -10.79878 -10.62139 -9.44854 -9.40050 -9.09413 -8.30849 -6.33770 0.33098 0.41370 1.29294 1.35177 1.46619 2.32252 2.60481 3.05013 3.21795 3.33350 3.79704 3.90040 4.02879 4.07421 4.11858 4.20233 4.26755 4.42020 4.45329 4.50536 4.62211 4.66039 4.70343 4.75951 4.76871 4.83887 4.86373 4.91982 4.95951 4.97415 5.06713 5.10348 5.16470 5.22372 5.23312 5.40101 5.43020 5.47004 5.62992 5.64447 5.71449 5.75932 6.01923 6.17894 6.27526 6.35806 6.73258 6.87821 7.31910 8.85976 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.025572 B = 0.004152 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.679546 B = 6741.641856 C = 6901.490836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.072 4.072 3 C -0.141 4.141 4 C -0.055 4.055 5 C -0.113 4.113 6 C -0.124 4.124 7 C 0.099 3.901 8 N -0.536 5.536 9 C 0.078 3.922 10 C -0.115 4.115 11 C -0.119 4.119 12 C 0.022 3.978 13 H 0.024 0.976 14 C -0.517 4.517 15 H 0.035 0.965 16 C 0.015 3.985 17 N -0.949 5.949 18 Si 0.949 3.051 19 H -0.269 1.269 20 H -0.298 1.298 21 H -0.251 1.251 22 C 0.090 3.910 23 C 0.114 3.886 24 O -0.505 6.505 25 C -0.165 4.165 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.141 0.859 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.039 0.961 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.025 0.975 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.034 0.966 40 H 0.047 0.953 41 H 0.266 0.734 42 H 0.015 0.985 43 H 0.063 0.937 44 H 0.402 0.598 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.342 -3.182 -10.771 26.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.072 4.072 3 C -0.159 4.159 4 C -0.056 4.056 5 C -0.169 4.169 6 C -0.125 4.125 7 C -0.027 4.027 8 N -0.260 5.260 9 C -0.050 4.050 10 C -0.153 4.153 11 C -0.157 4.157 12 C 0.003 3.997 13 H 0.042 0.958 14 C -0.555 4.555 15 H 0.054 0.946 16 C -0.182 4.182 17 N -0.590 5.590 18 Si 0.777 3.223 19 H -0.195 1.195 20 H -0.225 1.225 21 H -0.175 1.175 22 C -0.038 4.038 23 C 0.069 3.931 24 O -0.317 6.317 25 C -0.183 4.183 26 H 0.102 0.898 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.159 0.841 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.043 0.957 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.033 0.967 43 H 0.081 0.919 44 H 0.260 0.740 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -24.447 -2.726 -9.830 26.489 hybrid contribution 1.137 -0.805 -0.053 1.394 sum -23.310 -3.531 -9.883 25.563 Atomic orbital electron populations 1.20832 0.88949 1.03632 1.03330 1.20085 0.97528 0.92153 0.97425 1.21164 0.92997 0.98698 1.03006 1.19843 0.94061 0.94825 0.96855 1.20833 1.00007 0.93524 1.02571 1.19972 0.95117 0.93002 1.04452 1.20873 0.91128 1.01346 0.89393 1.61968 1.13780 1.34987 1.15283 1.21897 1.00480 0.89304 0.93274 1.21643 0.95309 1.01491 0.96863 1.21905 0.95761 0.99273 0.98743 1.19048 0.93425 0.93821 0.93403 0.95763 1.21315 0.92845 1.48287 0.93081 0.94637 1.25794 0.95517 0.94254 1.02619 1.70040 1.10307 1.51640 1.26995 0.85827 0.79680 0.77932 0.78891 1.19507 1.22541 1.17492 1.21789 0.85833 0.98930 0.97233 1.18372 0.90153 0.84781 0.99824 1.84852 1.76343 1.35818 1.34703 1.21393 0.92868 0.99191 1.04886 0.89827 0.90906 0.90550 0.84111 0.91586 0.89875 0.91595 0.94299 0.89625 0.90130 0.95689 0.92342 0.90646 0.94763 0.93378 0.92550 0.96660 0.91856 0.73980 0.84445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 10.01 71.24 0.71 -0.60 16 2 C -0.07 -1.32 5.88 -19.88 -0.12 -1.43 16 3 C -0.14 -2.79 9.35 22.29 0.21 -2.58 16 4 C -0.06 -1.30 5.88 -19.88 -0.12 -1.42 16 5 C -0.11 -2.46 9.61 71.24 0.68 -1.78 16 6 C -0.12 -3.20 4.91 -19.77 -0.10 -3.30 16 7 C 0.10 2.86 4.54 85.56 0.39 3.24 16 8 N -0.54 -18.84 4.65 -900.94 -4.19 -23.03 16 9 C 0.08 2.67 4.40 86.32 0.38 3.05 16 10 C -0.12 -4.22 6.09 30.64 0.19 -4.03 16 11 C -0.12 -5.29 4.73 30.67 0.15 -5.15 16 12 C 0.02 1.08 1.85 -11.49 -0.02 1.06 16 13 H 0.02 1.23 7.21 -2.39 -0.02 1.21 16 14 C -0.52 -30.22 9.15 25.60 0.23 -29.99 16 15 H 0.04 2.27 7.99 -2.91 -0.02 2.24 16 16 C 0.02 0.90 5.45 84.65 0.46 1.37 16 17 N -0.95 -60.49 13.96 21.45 0.30 -60.19 16 18 Si 0.95 46.91 24.35 68.60 1.67 48.58 16 19 H -0.27 -12.71 6.89 99.48 0.69 -12.02 16 20 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 21 H -0.25 -11.78 6.53 99.48 0.65 -11.13 16 22 C 0.09 3.73 4.68 86.32 0.40 4.14 16 23 C 0.11 2.66 5.42 22.51 0.12 2.79 16 24 O -0.50 -11.01 10.83 -92.38 -1.00 -12.01 16 25 C -0.16 -3.34 9.64 22.36 0.22 -3.12 16 26 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.07 0.77 8.08 -2.39 -0.02 0.75 16 28 H 0.08 0.78 8.08 -2.39 -0.02 0.76 16 29 H 0.14 2.15 8.06 -2.91 -0.02 2.12 16 30 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.08 1.38 8.08 -2.39 -0.02 1.36 16 32 H 0.07 1.49 5.94 -2.38 -0.01 1.47 16 33 H 0.04 1.08 7.52 -2.39 -0.02 1.07 16 34 H 0.09 2.36 5.78 -2.38 -0.01 2.34 16 35 H 0.08 2.65 5.31 -2.39 -0.01 2.64 16 36 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.03 1.58 3.34 -2.39 -0.01 1.57 16 40 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 41 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 42 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.06 2.61 8.01 -2.38 -0.02 2.59 16 44 H 0.40 5.22 9.06 -74.05 -0.67 4.55 16 45 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -69.59 341.75 0.81 -68.78 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 0.23 Total: 15.61 kcal Atomic # 6 Polarization: -41.54 SS G_CDS: 3.79 Total: -37.75 kcal Atomic # 7 Polarization: -79.33 SS G_CDS: -3.89 Total: -83.22 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: -1.00 Total: -12.01 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 1.67 Total: 48.58 kcal Total: -69.59 0.81 -68.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231846093.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.611 kcal (2) G-P(sol) polarization free energy of solvation -69.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds