Wall clock time and date at job start Tue Mar 31 2020 05:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38289 * 119.96926 * 2 1 4 4 C 1.38240 * 120.11036 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.97320 * 179.97438 * 4 3 2 6 6 C 1.38173 * 120.05812 * 359.67646 * 4 3 2 7 7 C 1.50697 * 120.03026 * 180.29779 * 6 4 3 8 8 N 1.46900 * 109.47406 * 270.27672 * 7 6 4 9 9 C 1.46845 * 110.99874 * 294.21132 * 8 7 6 10 10 C 1.53035 * 109.52178 * 174.15792 * 9 8 7 11 11 C 1.53117 * 109.27948 * 59.18127 * 10 9 8 12 12 C 1.53118 * 109.15992 * 302.34351 * 11 10 9 13 13 H 1.08996 * 109.53782 * 297.69414 * 12 11 10 14 14 C 1.50702 * 109.50538 * 177.59353 * 12 11 10 15 15 H 1.08000 * 119.99850 * 240.20220 * 14 12 11 16 16 C 1.37875 * 119.99625 * 60.19567 * 14 12 11 17 17 N 1.31510 * 120.00142 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 119.99818 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47230 * 90.00140 * 18 16 14 20 20 H 1.48493 * 109.47485 * 210.00184 * 18 16 14 21 21 H 1.48503 * 109.47045 * 330.00483 * 18 16 14 22 22 C 1.46844 * 111.00112 * 169.99953 * 8 7 6 23 23 C 1.38709 * 119.93675 * 0.57760 * 6 4 3 24 24 O 1.35905 * 120.05346 * 179.72475 * 23 6 4 25 25 C 1.38116 * 119.97322 * 179.97438 * 2 1 3 26 26 H 1.08996 * 109.47210 * 270.02034 * 1 2 3 27 27 H 1.09002 * 109.47304 * 30.02506 * 1 2 3 28 28 H 1.09000 * 109.46610 * 150.02425 * 1 2 3 29 29 H 1.08001 * 119.94341 * 0.02562 * 3 2 1 30 30 H 1.08997 * 109.47574 * 89.99817 * 5 4 3 31 31 H 1.09000 * 109.47283 * 210.00050 * 5 4 3 32 32 H 1.09004 * 109.46996 * 329.99323 * 5 4 3 33 33 H 1.08998 * 109.47171 * 30.27985 * 7 6 4 34 34 H 1.09004 * 109.46882 * 150.27437 * 7 6 4 35 35 H 1.08996 * 109.46653 * 294.17450 * 9 8 7 36 36 H 1.09007 * 109.46321 * 54.14262 * 9 8 7 37 37 H 1.09008 * 109.50640 * 299.23963 * 10 9 8 38 38 H 1.09002 * 109.50414 * 179.12436 * 10 9 8 39 39 H 1.09003 * 109.52353 * 182.44325 * 11 10 9 40 40 H 1.09002 * 109.57343 * 62.27914 * 11 10 9 41 41 H 0.97005 * 119.99754 * 179.97438 * 17 16 14 42 42 H 1.08998 * 109.46457 * 305.85750 * 22 8 7 43 43 H 1.08995 * 109.45791 * 65.82722 * 22 8 7 44 44 H 0.96705 * 113.99576 * 269.72355 * 24 23 6 45 45 H 1.08003 * 120.03068 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5803 1.2014 -0.0005 5 6 4.3299 2.5087 -0.0011 6 6 4.2753 0.0072 0.0057 7 6 5.7822 0.0117 0.0119 8 7 6.2776 0.0159 -1.3711 9 6 5.9295 -1.2341 -2.0586 10 6 6.3310 -1.1362 -3.5321 11 6 7.8375 -0.8806 -3.6297 12 6 8.1805 0.4008 -2.8649 13 1 7.6703 1.2472 -3.3246 14 6 9.6697 0.6280 -2.9061 15 1 10.2356 0.6670 -1.9871 16 6 10.3096 0.7861 -4.1171 17 7 9.6204 0.7390 -5.2361 18 14 12.1554 1.0685 -4.1681 19 1 12.8542 -0.2393 -4.2513 20 1 12.4980 1.8892 -5.3573 21 1 12.5816 1.7799 -2.9362 22 6 7.7254 0.2584 -1.4107 23 6 3.5846 -1.1957 0.0003 24 8 4.2659 -2.3717 0.0008 25 6 2.1971 -1.1964 0.0005 26 1 -0.3633 0.0004 1.0276 27 1 -0.3634 0.8898 -0.5142 28 1 -0.3632 -0.8902 -0.5135 29 1 1.6564 2.1325 0.0004 30 1 4.5111 2.8242 1.0263 31 1 5.2825 2.3811 -0.5153 32 1 3.7385 3.2665 -0.5150 33 1 6.1408 0.9017 0.5290 34 1 6.1461 -0.8783 0.5255 35 1 6.4592 -2.0647 -1.5923 36 1 4.8550 -1.4018 -1.9853 37 1 5.7912 -0.3143 -4.0026 38 1 6.0867 -2.0699 -4.0386 39 1 8.1206 -0.7670 -4.6762 40 1 8.3793 -1.7205 -3.1948 41 1 10.0707 0.8505 -6.0881 42 1 7.9552 1.1746 -0.8668 43 1 8.2466 -0.5793 -0.9474 44 1 4.4630 -2.7123 -0.8826 45 1 1.6571 -2.1318 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231846094.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:36 Heat of formation + Delta-G solvation = -33.834060 kcal Electronic energy + Delta-G solvation = -23744.224961 eV Core-core repulsion = 20532.746419 eV Total energy + Delta-G solvation = -3211.478543 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.31551 -37.96566 -36.95639 -34.53683 -33.10196 -31.63019 -30.58453 -29.87046 -27.96480 -27.00208 -24.99201 -24.48098 -22.18978 -21.74166 -21.41906 -19.90433 -18.68459 -17.72918 -16.39548 -16.30320 -15.76946 -15.47162 -14.59473 -14.37794 -14.06728 -13.87092 -13.66360 -13.27836 -13.24910 -13.01964 -12.73770 -12.58727 -12.51363 -12.34508 -12.06126 -11.80754 -11.49112 -11.31359 -11.23190 -11.04230 -10.94073 -10.69666 -10.66004 -10.29345 -10.11831 -9.82835 -9.47281 -9.08352 -8.70912 -8.49241 -8.39042 -8.29887 -7.63280 -5.97150 -4.03270 1.28939 1.36268 3.30986 3.37950 3.40875 3.56487 4.23663 4.42270 4.63538 4.78712 4.82035 5.04227 5.17912 5.29993 5.32979 5.40370 5.44627 5.55466 5.58005 5.69452 5.73011 5.78649 5.80437 5.92574 5.96799 6.01310 6.15851 6.21946 6.32689 6.39629 6.43620 6.49451 6.53466 6.67425 6.73516 6.75299 6.90111 6.96337 7.21499 7.38755 7.65609 7.68541 7.75304 7.80732 8.08510 8.17514 8.48385 9.00796 9.61072 11.08782 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028466 B = 0.003822 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.403516 B = 7324.197394 C = 7625.923538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.076 4.076 3 C -0.133 4.133 4 C -0.045 4.045 5 C -0.121 4.121 6 C -0.096 4.096 7 C 0.091 3.909 8 N -0.529 5.529 9 C 0.062 3.938 10 C -0.118 4.118 11 C -0.110 4.110 12 C 0.056 3.944 13 H 0.034 0.966 14 C -0.515 4.515 15 H 0.053 0.947 16 C 0.063 3.937 17 N -0.888 5.888 18 Si 0.890 3.110 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.067 3.933 23 C 0.115 3.885 24 O -0.502 6.502 25 C -0.155 4.155 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.121 0.879 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.042 0.958 35 H 0.027 0.973 36 H 0.050 0.950 37 H 0.060 0.940 38 H 0.045 0.955 39 H 0.090 0.910 40 H 0.030 0.970 41 H 0.259 0.741 42 H 0.059 0.941 43 H 0.020 0.980 44 H 0.387 0.613 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.751 -1.781 9.181 18.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.076 4.076 3 C -0.151 4.151 4 C -0.045 4.045 5 C -0.177 4.177 6 C -0.097 4.097 7 C -0.037 4.037 8 N -0.254 5.254 9 C -0.066 4.066 10 C -0.156 4.156 11 C -0.148 4.148 12 C 0.037 3.963 13 H 0.052 0.948 14 C -0.553 4.553 15 H 0.071 0.929 16 C -0.138 4.138 17 N -0.527 5.527 18 Si 0.718 3.282 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.059 4.059 23 C 0.070 3.930 24 O -0.314 6.314 25 C -0.174 4.174 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.139 0.861 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.060 0.940 35 H 0.045 0.955 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.109 0.891 40 H 0.049 0.951 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.038 0.962 44 H 0.246 0.754 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.959 -1.324 9.338 18.538 hybrid contribution 1.416 -0.748 -0.173 1.611 sum -14.543 -2.072 9.165 17.315 Atomic orbital electron populations 1.20762 0.91190 1.02691 1.02143 1.19681 0.95840 0.92634 0.99435 1.20897 0.93490 0.97425 1.03298 1.19653 0.93168 0.94870 0.96846 1.20887 1.01541 0.93263 1.02006 1.20024 0.96188 0.91947 1.01582 1.20952 0.89848 1.01452 0.91420 1.62059 1.16395 1.34391 1.12510 1.22125 0.97904 0.90366 0.96212 1.21690 1.00196 1.00025 0.93652 1.21647 0.90469 0.98206 1.04487 1.18655 0.94985 0.94423 0.88210 0.94755 1.21148 0.92693 1.49108 0.92389 0.92852 1.24928 0.97933 0.95215 0.95742 1.69892 1.35220 1.50203 0.97379 0.86635 0.85943 0.78109 0.77525 1.20809 1.21268 1.19967 1.22337 0.83570 0.98642 1.01391 1.18240 0.89574 0.84991 1.00154 1.84798 1.76345 1.36194 1.34080 1.21159 0.93230 0.98135 1.04873 0.91316 0.91507 0.91675 0.86085 0.91507 0.89513 0.91671 0.90098 0.93957 0.95513 0.93174 0.92113 0.93585 0.89130 0.95147 0.93079 0.92221 0.96211 0.75418 0.85915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 36.01 0.36 -0.57 16 2 C -0.08 -0.87 5.88 -104.64 -0.62 -1.49 16 3 C -0.13 -1.61 9.35 -39.56 -0.37 -1.98 16 4 C -0.04 -0.61 5.88 -104.64 -0.62 -1.22 16 5 C -0.12 -1.49 9.18 36.01 0.33 -1.16 16 6 C -0.10 -1.44 4.90 -104.47 -0.51 -1.95 16 7 C 0.09 1.45 4.13 -4.98 -0.02 1.43 16 8 N -0.53 -9.65 4.59 -236.12 -1.08 -10.73 16 9 C 0.06 1.07 3.97 -3.84 -0.02 1.05 16 10 C -0.12 -2.27 6.09 -26.65 -0.16 -2.43 16 11 C -0.11 -2.57 5.03 -26.61 -0.13 -2.71 16 12 C 0.06 1.38 2.26 -91.69 -0.21 1.18 16 13 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 14 C -0.51 -13.99 8.56 -34.44 -0.29 -14.28 16 15 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 16 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 17 N -0.89 -25.19 11.36 55.43 0.63 -24.56 16 18 Si 0.89 21.18 29.54 -169.99 -5.02 16.15 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 C 0.07 1.41 4.68 -3.83 -0.02 1.39 16 23 C 0.12 1.64 5.53 -39.22 -0.22 1.43 16 24 O -0.50 -7.00 12.02 -19.44 -0.23 -7.23 16 25 C -0.16 -1.95 9.64 -39.43 -0.38 -2.33 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 28 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 29 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.24 6.67 -51.93 -0.35 0.90 16 32 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 33 H 0.08 1.23 6.57 -51.93 -0.34 0.89 16 34 H 0.04 0.70 7.51 -51.93 -0.39 0.31 16 35 H 0.03 0.46 7.99 -51.93 -0.41 0.05 16 36 H 0.05 0.77 4.69 -51.92 -0.24 0.53 16 37 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.09 2.38 6.17 -51.93 -0.32 2.06 16 40 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.06 1.23 8.02 -51.93 -0.42 0.81 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.39 4.48 6.55 45.56 0.30 4.78 16 45 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 LS Contribution 346.81 15.07 5.23 5.23 Total: -1.00 -29.10 346.81 -10.23 -39.33 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -6.78 Total: 3.82 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -2.96 Total: -22.00 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: -0.45 Total: -35.29 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: -0.23 Total: -7.23 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.10 -10.23 -39.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231846094.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.494 kcal (2) G-P(sol) polarization free energy of solvation -29.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds