Wall clock time and date at job start Tue Mar 31 2020 05:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38289 * 119.96926 * 2 1 4 4 C 1.38240 * 120.11036 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.97320 * 179.97438 * 4 3 2 6 6 C 1.38173 * 120.05812 * 359.67646 * 4 3 2 7 7 C 1.50697 * 120.03026 * 180.29779 * 6 4 3 8 8 N 1.46900 * 109.47406 * 270.27672 * 7 6 4 9 9 C 1.46845 * 110.99874 * 294.21132 * 8 7 6 10 10 C 1.53035 * 109.52178 * 174.15792 * 9 8 7 11 11 C 1.53117 * 109.27948 * 59.18127 * 10 9 8 12 12 C 1.53118 * 109.15992 * 302.34351 * 11 10 9 13 13 H 1.08996 * 109.53782 * 297.69414 * 12 11 10 14 14 C 1.50702 * 109.50538 * 177.59353 * 12 11 10 15 15 H 1.08000 * 119.99850 * 240.20220 * 14 12 11 16 16 C 1.37875 * 119.99625 * 60.19567 * 14 12 11 17 17 N 1.31510 * 120.00142 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 119.99818 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.47230 * 90.00140 * 18 16 14 20 20 H 1.48493 * 109.47485 * 210.00184 * 18 16 14 21 21 H 1.48503 * 109.47045 * 330.00483 * 18 16 14 22 22 C 1.46844 * 111.00112 * 169.99953 * 8 7 6 23 23 C 1.38709 * 119.93675 * 0.57760 * 6 4 3 24 24 O 1.35905 * 120.05346 * 179.72475 * 23 6 4 25 25 C 1.38116 * 119.97322 * 179.97438 * 2 1 3 26 26 H 1.08996 * 109.47210 * 270.02034 * 1 2 3 27 27 H 1.09002 * 109.47304 * 30.02506 * 1 2 3 28 28 H 1.09000 * 109.46610 * 150.02425 * 1 2 3 29 29 H 1.08001 * 119.94341 * 0.02562 * 3 2 1 30 30 H 1.08997 * 109.47574 * 89.99817 * 5 4 3 31 31 H 1.09000 * 109.47283 * 210.00050 * 5 4 3 32 32 H 1.09004 * 109.46996 * 329.99323 * 5 4 3 33 33 H 1.08998 * 109.47171 * 30.27985 * 7 6 4 34 34 H 1.09004 * 109.46882 * 150.27437 * 7 6 4 35 35 H 1.08996 * 109.46653 * 294.17450 * 9 8 7 36 36 H 1.09007 * 109.46321 * 54.14262 * 9 8 7 37 37 H 1.09008 * 109.50640 * 299.23963 * 10 9 8 38 38 H 1.09002 * 109.50414 * 179.12436 * 10 9 8 39 39 H 1.09003 * 109.52353 * 182.44325 * 11 10 9 40 40 H 1.09002 * 109.57343 * 62.27914 * 11 10 9 41 41 H 0.97005 * 119.99754 * 179.97438 * 17 16 14 42 42 H 1.08998 * 109.46457 * 305.85750 * 22 8 7 43 43 H 1.08995 * 109.45791 * 65.82722 * 22 8 7 44 44 H 0.96705 * 113.99576 * 269.72355 * 24 23 6 45 45 H 1.08003 * 120.03068 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1980 0.0000 4 6 3.5803 1.2014 -0.0005 5 6 4.3299 2.5087 -0.0011 6 6 4.2753 0.0072 0.0057 7 6 5.7822 0.0117 0.0119 8 7 6.2776 0.0159 -1.3711 9 6 5.9295 -1.2341 -2.0586 10 6 6.3310 -1.1362 -3.5321 11 6 7.8375 -0.8806 -3.6297 12 6 8.1805 0.4008 -2.8649 13 1 7.6703 1.2472 -3.3246 14 6 9.6697 0.6280 -2.9061 15 1 10.2356 0.6670 -1.9871 16 6 10.3096 0.7861 -4.1171 17 7 9.6204 0.7390 -5.2361 18 14 12.1554 1.0685 -4.1681 19 1 12.8542 -0.2393 -4.2513 20 1 12.4980 1.8892 -5.3573 21 1 12.5816 1.7799 -2.9362 22 6 7.7254 0.2584 -1.4107 23 6 3.5846 -1.1957 0.0003 24 8 4.2659 -2.3717 0.0008 25 6 2.1971 -1.1964 0.0005 26 1 -0.3633 0.0004 1.0276 27 1 -0.3634 0.8898 -0.5142 28 1 -0.3632 -0.8902 -0.5135 29 1 1.6564 2.1325 0.0004 30 1 4.5111 2.8242 1.0263 31 1 5.2825 2.3811 -0.5153 32 1 3.7385 3.2665 -0.5150 33 1 6.1408 0.9017 0.5290 34 1 6.1461 -0.8783 0.5255 35 1 6.4592 -2.0647 -1.5923 36 1 4.8550 -1.4018 -1.9853 37 1 5.7912 -0.3143 -4.0026 38 1 6.0867 -2.0699 -4.0386 39 1 8.1206 -0.7670 -4.6762 40 1 8.3793 -1.7205 -3.1948 41 1 10.0707 0.8505 -6.0881 42 1 7.9552 1.1746 -0.8668 43 1 8.2466 -0.5793 -0.9474 44 1 4.4630 -2.7123 -0.8826 45 1 1.6571 -2.1318 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231846094.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:36 Heat of formation + Delta-G solvation = -50.853866 kcal Electronic energy + Delta-G solvation = -23744.962996 eV Core-core repulsion = 20532.746419 eV Total energy + Delta-G solvation = -3212.216577 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.39024 -39.46856 -37.98091 -35.97804 -34.62648 -33.16772 -31.78569 -31.49636 -29.04797 -27.96624 -26.92802 -25.73845 -23.58258 -23.19225 -22.76215 -20.97387 -20.41457 -18.80652 -18.39744 -17.33427 -16.92131 -16.86983 -16.35545 -15.67879 -15.54462 -15.04133 -14.94023 -14.61357 -14.40647 -14.24550 -14.07205 -13.90703 -13.57594 -13.46761 -13.42867 -13.25790 -12.85171 -12.72219 -12.53829 -12.51925 -12.29035 -12.19473 -12.07688 -11.84274 -11.75447 -11.41252 -11.27798 -10.87784 -10.67499 -10.37477 -9.46017 -9.43884 -9.08077 -8.07572 -6.21532 0.30225 0.38957 1.41335 1.42148 1.52233 2.42753 2.58891 3.12919 3.19541 3.34592 3.80362 3.88617 4.06356 4.12064 4.13598 4.26353 4.39876 4.44346 4.50140 4.57404 4.62887 4.69094 4.72535 4.75780 4.84527 4.85650 4.88702 4.95442 4.97900 5.04422 5.10254 5.16257 5.21251 5.36968 5.39745 5.45025 5.52037 5.61756 5.63704 5.73452 5.95069 5.98646 6.11988 6.20509 6.29093 6.45793 6.72291 6.90789 7.46268 8.96986 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028466 B = 0.003822 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.403516 B = 7324.197394 C = 7625.923538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.072 4.072 3 C -0.137 4.137 4 C -0.056 4.056 5 C -0.117 4.117 6 C -0.121 4.121 7 C 0.099 3.901 8 N -0.534 5.534 9 C 0.068 3.932 10 C -0.110 4.110 11 C -0.103 4.103 12 C 0.055 3.945 13 H -0.002 1.002 14 C -0.536 4.536 15 H 0.051 0.949 16 C 0.015 3.985 17 N -0.915 5.915 18 Si 0.953 3.047 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.269 1.269 22 C 0.082 3.918 23 C 0.103 3.897 24 O -0.510 6.510 25 C -0.162 4.162 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.144 0.856 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.035 0.965 35 H 0.031 0.969 36 H 0.075 0.925 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.023 0.977 41 H 0.260 0.740 42 H 0.058 0.942 43 H 0.014 0.986 44 H 0.395 0.605 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.494 -2.012 10.146 20.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.072 4.072 3 C -0.155 4.155 4 C -0.056 4.056 5 C -0.174 4.174 6 C -0.122 4.122 7 C -0.028 4.028 8 N -0.258 5.258 9 C -0.059 4.059 10 C -0.148 4.148 11 C -0.141 4.141 12 C 0.037 3.963 13 H 0.016 0.984 14 C -0.575 4.575 15 H 0.069 0.931 16 C -0.184 4.184 17 N -0.554 5.554 18 Si 0.779 3.221 19 H -0.202 1.202 20 H -0.209 1.209 21 H -0.193 1.193 22 C -0.046 4.046 23 C 0.058 3.942 24 O -0.324 6.324 25 C -0.181 4.181 26 H 0.100 0.900 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.162 0.838 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.042 0.958 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.032 0.968 44 H 0.255 0.745 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -17.713 -1.561 10.312 20.556 hybrid contribution 1.879 -0.659 -0.466 2.045 sum -15.834 -2.220 9.846 18.777 Atomic orbital electron populations 1.20834 0.88680 1.03826 1.03308 1.20102 0.97667 0.92008 0.97423 1.21195 0.92916 0.98789 1.02608 1.19865 0.94143 0.94731 0.96891 1.20858 1.00380 0.93377 1.02757 1.19980 0.95182 0.92996 1.04033 1.20863 0.91121 1.01167 0.89611 1.61991 1.14248 1.35173 1.14436 1.22084 0.99383 0.90034 0.94441 1.21592 0.96801 1.00801 0.95581 1.21450 0.93457 0.97190 1.02011 1.18559 0.93662 0.93610 0.90501 0.98426 1.21515 0.94187 1.49298 0.92469 0.93107 1.25698 1.02294 0.94983 0.95413 1.70034 1.36848 1.50731 0.97773 0.85634 0.80689 0.78134 0.77648 1.20232 1.20895 1.19320 1.22004 0.85547 0.98403 0.98630 1.18427 0.90381 0.84708 1.00701 1.84777 1.76540 1.36205 1.34880 1.21400 0.92626 0.99406 1.04631 0.89990 0.90305 0.90694 0.83812 0.90082 0.92027 0.90316 0.89876 0.94679 0.95048 0.90718 0.93367 0.90978 0.92343 0.95842 0.93084 0.92346 0.96776 0.74510 0.84295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 10.01 71.24 0.71 -0.71 16 2 C -0.07 -1.44 5.88 -19.88 -0.12 -1.56 16 3 C -0.14 -2.95 9.35 22.28 0.21 -2.74 16 4 C -0.06 -1.43 5.88 -19.88 -0.12 -1.55 16 5 C -0.12 -2.78 9.18 71.24 0.65 -2.12 16 6 C -0.12 -3.48 4.90 -19.77 -0.10 -3.58 16 7 C 0.10 3.16 4.13 85.56 0.35 3.51 16 8 N -0.53 -19.56 4.59 -900.95 -4.14 -23.70 16 9 C 0.07 2.30 3.97 86.33 0.34 2.64 16 10 C -0.11 -4.23 6.09 30.64 0.19 -4.04 16 11 C -0.10 -4.95 5.03 30.67 0.15 -4.80 16 12 C 0.06 2.85 2.26 -11.49 -0.03 2.82 16 13 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 14 C -0.54 -29.95 8.56 25.60 0.22 -29.74 16 15 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 16 C 0.01 0.84 5.30 84.65 0.45 1.29 16 17 N -0.91 -53.31 11.36 21.45 0.24 -53.07 16 18 Si 0.95 43.96 29.54 68.60 2.03 45.99 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 C 0.08 3.51 4.68 86.33 0.40 3.91 16 23 C 0.10 2.76 5.53 22.51 0.12 2.89 16 24 O -0.51 -13.51 12.02 -92.48 -1.11 -14.62 16 25 C -0.16 -3.68 9.64 22.36 0.22 -3.47 16 26 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.08 0.86 8.09 -2.39 -0.02 0.84 16 28 H 0.07 0.85 8.08 -2.39 -0.02 0.83 16 29 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 30 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.06 1.77 6.67 -2.39 -0.02 1.76 16 32 H 0.08 1.61 8.09 -2.38 -0.02 1.59 16 33 H 0.08 2.54 6.57 -2.39 -0.02 2.53 16 34 H 0.04 1.16 7.51 -2.38 -0.02 1.14 16 35 H 0.03 1.05 7.99 -2.39 -0.02 1.03 16 36 H 0.07 2.19 4.69 -2.38 -0.01 2.18 16 37 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 38 H 0.07 2.38 8.14 -2.39 -0.02 2.37 16 39 H 0.06 3.19 6.17 -2.39 -0.01 3.17 16 40 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.26 14.42 8.31 -92.70 -0.77 13.65 16 42 H 0.06 2.48 8.02 -2.39 -0.02 2.46 16 43 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.40 8.50 6.55 -74.05 -0.49 8.02 16 45 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -63.80 346.81 1.18 -62.63 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 0.49 Total: 20.03 kcal Atomic # 6 Polarization: -40.93 SS G_CDS: 3.67 Total: -37.26 kcal Atomic # 7 Polarization: -72.87 SS G_CDS: -3.89 Total: -76.77 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -1.11 Total: -14.62 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -63.80 1.18 -62.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231846094.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.773 kcal (2) G-P(sol) polarization free energy of solvation -63.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds