Wall clock time and date at job start Tue Mar 31 2020 05:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38290 * 119.96505 * 2 1 4 4 C 1.38248 * 120.10352 * 179.77127 * 3 2 1 5 5 C 1.50706 * 119.96943 * 180.25487 * 4 3 2 6 6 C 1.38166 * 120.05910 * 0.50518 * 4 3 2 7 7 C 1.50701 * 120.02887 * 179.77449 * 6 4 3 8 8 N 1.46906 * 109.46965 * 269.72385 * 7 6 4 9 9 C 1.46853 * 110.99832 * 294.21171 * 8 7 6 10 10 C 1.53033 * 109.52262 * 174.16246 * 9 8 7 11 11 C 1.53112 * 109.27992 * 59.17361 * 10 9 8 12 12 C 1.50701 * 109.57672 * 182.40672 * 11 10 9 13 13 H 1.08003 * 119.99742 * 119.71365 * 12 11 10 14 14 C 1.37876 * 120.00476 * 299.72309 * 12 11 10 15 15 N 1.31520 * 119.99516 * 359.97438 * 14 12 11 16 16 Si 1.86792 * 120.00480 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46944 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47371 * 119.99376 * 16 14 12 19 19 H 1.48503 * 109.47120 * 239.99755 * 16 14 12 20 20 C 1.53120 * 109.16707 * 302.34582 * 11 10 9 21 21 C 1.46844 * 110.99887 * 170.00048 * 8 7 6 22 22 C 1.38713 * 119.94316 * 359.49758 * 6 4 3 23 23 O 1.35891 * 120.05562 * 180.27557 * 22 6 4 24 24 C 1.38121 * 119.97354 * 180.02562 * 2 1 3 25 25 H 1.09001 * 109.47142 * 269.97334 * 1 2 3 26 26 H 1.08998 * 109.47350 * 29.97878 * 1 2 3 27 27 H 1.09007 * 109.46564 * 149.97772 * 1 2 3 28 28 H 1.07992 * 119.94773 * 0.02562 * 3 2 1 29 29 H 1.09000 * 109.47278 * 270.25094 * 5 4 3 30 30 H 1.08999 * 109.47114 * 30.25338 * 5 4 3 31 31 H 1.09003 * 109.47072 * 150.25083 * 5 4 3 32 32 H 1.08993 * 109.47133 * 149.72423 * 7 6 4 33 33 H 1.08996 * 109.47320 * 29.72163 * 7 6 4 34 34 H 1.09001 * 109.46125 * 294.17808 * 9 8 7 35 35 H 1.09003 * 109.46462 * 54.14202 * 9 8 7 36 36 H 1.09007 * 109.50330 * 299.23709 * 10 9 8 37 37 H 1.09002 * 109.50417 * 179.12117 * 10 9 8 38 38 H 1.09005 * 109.52421 * 62.25399 * 11 10 9 39 39 H 0.97002 * 119.99540 * 180.02562 * 15 14 12 40 40 H 1.08996 * 109.49890 * 297.71825 * 20 11 10 41 41 H 1.08989 * 109.54077 * 177.61187 * 20 11 10 42 42 H 1.09000 * 109.46299 * 305.85220 * 21 8 7 43 43 H 1.08998 * 109.46010 * 65.83553 * 21 8 7 44 44 H 0.96699 * 114.00218 * 89.99746 * 23 22 6 45 45 H 1.07996 * 120.02703 * 359.94884 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5803 1.2014 0.0048 5 6 4.3299 2.5088 0.0106 6 6 4.2752 0.0073 -0.0010 7 6 5.7822 0.0117 -0.0009 8 7 6.2720 0.0132 -1.3859 9 6 5.9210 -1.2382 -2.0695 10 6 6.3164 -1.1433 -3.5448 11 6 7.8225 -0.8879 -3.6492 12 6 8.2095 -0.7345 -5.0975 13 1 8.6575 0.1858 -5.4422 14 6 7.9914 -1.7688 -5.9827 15 7 7.4461 -2.8896 -5.5630 16 14 8.4705 -1.5784 -7.7781 17 1 9.0599 -0.2324 -7.9931 18 1 9.4672 -2.6188 -8.1376 19 1 7.2647 -1.7322 -8.6312 20 6 8.1686 0.3951 -2.8884 21 6 7.7195 0.2556 -1.4320 22 6 3.5847 -1.1957 -0.0010 23 8 4.2659 -2.3716 -0.0010 24 6 2.1971 -1.1965 -0.0005 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3634 0.8901 -0.5135 27 1 -0.3633 -0.8899 -0.5142 28 1 1.6564 2.1325 0.0004 29 1 4.5103 2.8287 -1.0157 30 1 3.7388 3.2643 0.5281 31 1 5.2829 2.3789 0.5235 32 1 6.1482 -0.8771 0.5129 33 1 6.1429 0.9028 0.5129 34 1 6.4526 -2.0679 -1.6037 35 1 4.8467 -1.4058 -1.9915 36 1 5.7747 -0.3224 -4.0148 37 1 6.0700 -2.0781 -4.0485 38 1 8.3653 -1.7271 -3.2141 39 1 7.2930 -3.6174 -6.1857 40 1 7.6560 1.2401 -3.3479 41 1 9.2454 0.5601 -2.9229 42 1 7.9516 1.1729 -0.8910 43 1 8.2427 -0.5813 -0.9693 44 1 4.4631 -2.7119 0.8823 45 1 1.6571 -2.1318 -0.0001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231846804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:01 Heat of formation + Delta-G solvation = -32.530717 kcal Electronic energy + Delta-G solvation = -23754.500529 eV Core-core repulsion = 20543.078503 eV Total energy + Delta-G solvation = -3211.422025 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.22225 -37.86202 -36.91848 -34.56117 -33.13566 -31.33826 -30.45593 -29.61801 -28.10624 -27.03496 -25.59293 -23.70100 -22.04533 -21.76656 -21.31096 -19.90692 -18.45818 -17.73904 -16.33074 -16.27745 -15.73561 -15.37218 -14.68330 -14.36275 -14.07853 -13.80962 -13.54263 -13.23287 -13.15465 -12.89227 -12.71971 -12.56910 -12.48547 -12.27274 -12.03667 -11.64919 -11.50830 -11.16694 -11.11887 -11.09445 -10.89698 -10.61563 -10.38346 -10.23212 -10.07083 -9.84912 -9.31728 -8.87317 -8.59004 -8.45446 -8.35541 -8.20436 -7.59070 -5.88752 -3.94095 1.32029 1.39126 3.35238 3.43021 3.47183 3.60601 4.25264 4.51649 4.70868 4.78477 4.81881 5.06872 5.17088 5.31497 5.36438 5.41397 5.46582 5.49172 5.63827 5.73403 5.75494 5.83980 5.86992 5.94794 6.02918 6.10327 6.24872 6.27639 6.40023 6.43121 6.55234 6.55492 6.73032 6.75675 6.83070 6.93518 6.98493 7.18048 7.28664 7.57427 7.73695 7.76883 7.83622 7.94787 8.15893 8.28515 8.57802 9.09958 9.69803 11.17278 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020032 B = 0.004186 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.399462 B = 6686.594826 C = 7104.850128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.074 4.074 3 C -0.135 4.135 4 C -0.048 4.048 5 C -0.112 4.112 6 C -0.100 4.100 7 C 0.095 3.905 8 N -0.526 5.526 9 C 0.065 3.935 10 C -0.103 4.103 11 C 0.048 3.952 12 C -0.509 4.509 13 H 0.054 0.946 14 C 0.060 3.940 15 N -0.891 5.891 16 Si 0.888 3.112 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.285 1.285 20 C -0.105 4.105 21 C 0.061 3.939 22 C 0.122 3.878 23 O -0.488 6.488 24 C -0.156 4.156 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.120 0.880 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.034 0.966 33 H 0.076 0.924 34 H 0.021 0.979 35 H 0.062 0.938 36 H 0.039 0.961 37 H 0.090 0.910 38 H 0.019 0.981 39 H 0.258 0.742 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.055 0.945 43 H 0.022 0.978 44 H 0.382 0.618 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.646 6.174 15.878 20.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.074 4.074 3 C -0.153 4.153 4 C -0.048 4.048 5 C -0.169 4.169 6 C -0.101 4.101 7 C -0.033 4.033 8 N -0.251 5.251 9 C -0.062 4.062 10 C -0.141 4.141 11 C 0.029 3.971 12 C -0.547 4.547 13 H 0.072 0.928 14 C -0.141 4.141 15 N -0.530 5.530 16 Si 0.716 3.284 17 H -0.199 1.199 18 H -0.212 1.212 19 H -0.211 1.211 20 C -0.143 4.143 21 C -0.067 4.067 22 C 0.077 3.923 23 O -0.297 6.297 24 C -0.174 4.174 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.138 0.862 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.052 0.948 33 H 0.095 0.905 34 H 0.040 0.960 35 H 0.081 0.919 36 H 0.058 0.942 37 H 0.108 0.892 38 H 0.037 0.963 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.040 0.960 44 H 0.237 0.763 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.936 6.436 14.940 19.601 hybrid contribution 0.618 -0.868 -0.136 1.074 sum -10.319 5.568 14.803 18.884 Atomic orbital electron populations 1.20768 0.91216 1.02814 1.02039 1.19683 0.95845 0.92658 0.99260 1.20856 0.93432 0.97406 1.03565 1.19603 0.93219 0.94770 0.97248 1.20816 0.99671 0.93259 1.03110 1.19968 0.96047 0.92026 1.02087 1.20890 0.90189 1.00421 0.91754 1.62062 1.13890 1.37099 1.12076 1.22249 0.99487 0.87652 0.96808 1.21648 0.98613 1.02714 0.91160 1.18686 0.92530 0.91477 0.94383 1.21257 1.39686 1.00092 0.93695 0.92790 1.24973 0.95276 0.95343 0.98462 1.69909 1.44046 1.04562 1.34500 0.86600 0.78119 0.77983 0.85667 1.19858 1.21183 1.21128 1.21662 0.98667 1.01283 0.92654 1.22117 0.86992 0.98465 0.99113 1.18262 0.89572 0.85043 0.99463 1.84988 1.76210 1.35965 1.32579 1.21190 0.93336 0.98172 1.04727 0.91365 0.91524 0.91583 0.86164 0.90278 0.92191 0.91268 0.94822 0.90538 0.96021 0.91927 0.94249 0.89185 0.96268 0.93239 0.92580 0.93309 0.92678 0.95966 0.76267 0.85833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 36.01 0.36 -0.62 16 2 C -0.07 -0.88 5.88 -104.64 -0.62 -1.50 16 3 C -0.13 -1.63 9.35 -39.56 -0.37 -2.00 16 4 C -0.05 -0.64 5.88 -104.64 -0.62 -1.25 16 5 C -0.11 -1.28 9.60 36.01 0.35 -0.93 16 6 C -0.10 -1.48 4.90 -104.47 -0.51 -1.99 16 7 C 0.09 1.45 4.55 -4.97 -0.02 1.42 16 8 N -0.53 -9.85 4.65 -236.11 -1.10 -10.95 16 9 C 0.06 1.40 4.40 -3.83 -0.02 1.38 16 10 C -0.10 -2.61 5.12 -26.66 -0.14 -2.75 16 11 C 0.05 1.24 2.16 -91.65 -0.20 1.04 16 12 C -0.51 -14.47 8.56 -34.44 -0.29 -14.76 16 13 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 14 C 0.06 1.72 5.31 -17.82 -0.09 1.62 16 15 N -0.89 -26.32 11.37 55.43 0.63 -25.69 16 16 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 17 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 C -0.10 -2.28 5.32 -26.65 -0.14 -2.42 16 21 C 0.06 1.13 5.46 -3.83 -0.02 1.11 16 22 C 0.12 1.76 5.42 -39.22 -0.21 1.55 16 23 O -0.49 -6.90 10.87 -19.40 -0.21 -7.11 16 24 C -0.16 -2.03 9.64 -39.43 -0.38 -2.41 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 27 H 0.07 0.55 8.08 -51.92 -0.42 0.13 16 28 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 31 H 0.07 0.76 5.94 -51.93 -0.31 0.45 16 32 H 0.03 0.51 7.51 -51.93 -0.39 0.12 16 33 H 0.08 1.03 5.78 -51.93 -0.30 0.73 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 1.36 5.34 -51.93 -0.28 1.08 16 36 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.09 2.54 6.18 -51.93 -0.32 2.22 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.05 1.02 8.14 -51.94 -0.42 0.59 16 42 H 0.05 0.88 8.02 -51.93 -0.42 0.47 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.38 3.48 9.06 45.56 0.41 3.89 16 45 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 348.70 15.07 5.25 5.25 Total: -1.00 -31.57 348.70 -10.00 -41.57 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -6.63 Total: 2.56 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: -2.92 Total: -22.52 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: -0.47 Total: -36.63 kcal Atomic # 8 Polarization: -6.90 SS G_CDS: -0.21 Total: -7.11 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.57 -10.00 -41.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231846804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.036 kcal (2) G-P(sol) polarization free energy of solvation -31.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds