Wall clock time and date at job start Tue Mar 31 2020 05:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38290 * 119.96505 * 2 1 4 4 C 1.38248 * 120.10352 * 179.77127 * 3 2 1 5 5 C 1.50706 * 119.96943 * 180.25487 * 4 3 2 6 6 C 1.38166 * 120.05910 * 0.50518 * 4 3 2 7 7 C 1.50701 * 120.02887 * 179.77449 * 6 4 3 8 8 N 1.46906 * 109.46965 * 269.72385 * 7 6 4 9 9 C 1.46853 * 110.99832 * 294.21171 * 8 7 6 10 10 C 1.53033 * 109.52262 * 174.16246 * 9 8 7 11 11 C 1.53112 * 109.27992 * 59.17361 * 10 9 8 12 12 C 1.50701 * 109.57672 * 182.40672 * 11 10 9 13 13 H 1.08003 * 119.99742 * 119.71365 * 12 11 10 14 14 C 1.37876 * 120.00476 * 299.72309 * 12 11 10 15 15 N 1.31520 * 119.99516 * 359.97438 * 14 12 11 16 16 Si 1.86792 * 120.00480 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46944 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47371 * 119.99376 * 16 14 12 19 19 H 1.48503 * 109.47120 * 239.99755 * 16 14 12 20 20 C 1.53120 * 109.16707 * 302.34582 * 11 10 9 21 21 C 1.46844 * 110.99887 * 170.00048 * 8 7 6 22 22 C 1.38713 * 119.94316 * 359.49758 * 6 4 3 23 23 O 1.35891 * 120.05562 * 180.27557 * 22 6 4 24 24 C 1.38121 * 119.97354 * 180.02562 * 2 1 3 25 25 H 1.09001 * 109.47142 * 269.97334 * 1 2 3 26 26 H 1.08998 * 109.47350 * 29.97878 * 1 2 3 27 27 H 1.09007 * 109.46564 * 149.97772 * 1 2 3 28 28 H 1.07992 * 119.94773 * 0.02562 * 3 2 1 29 29 H 1.09000 * 109.47278 * 270.25094 * 5 4 3 30 30 H 1.08999 * 109.47114 * 30.25338 * 5 4 3 31 31 H 1.09003 * 109.47072 * 150.25083 * 5 4 3 32 32 H 1.08993 * 109.47133 * 149.72423 * 7 6 4 33 33 H 1.08996 * 109.47320 * 29.72163 * 7 6 4 34 34 H 1.09001 * 109.46125 * 294.17808 * 9 8 7 35 35 H 1.09003 * 109.46462 * 54.14202 * 9 8 7 36 36 H 1.09007 * 109.50330 * 299.23709 * 10 9 8 37 37 H 1.09002 * 109.50417 * 179.12117 * 10 9 8 38 38 H 1.09005 * 109.52421 * 62.25399 * 11 10 9 39 39 H 0.97002 * 119.99540 * 180.02562 * 15 14 12 40 40 H 1.08996 * 109.49890 * 297.71825 * 20 11 10 41 41 H 1.08989 * 109.54077 * 177.61187 * 20 11 10 42 42 H 1.09000 * 109.46299 * 305.85220 * 21 8 7 43 43 H 1.08998 * 109.46010 * 65.83553 * 21 8 7 44 44 H 0.96699 * 114.00218 * 89.99746 * 23 22 6 45 45 H 1.07996 * 120.02703 * 359.94884 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5803 1.2014 0.0048 5 6 4.3299 2.5088 0.0106 6 6 4.2752 0.0073 -0.0010 7 6 5.7822 0.0117 -0.0009 8 7 6.2720 0.0132 -1.3859 9 6 5.9210 -1.2382 -2.0695 10 6 6.3164 -1.1433 -3.5448 11 6 7.8225 -0.8879 -3.6492 12 6 8.2095 -0.7345 -5.0975 13 1 8.6575 0.1858 -5.4422 14 6 7.9914 -1.7688 -5.9827 15 7 7.4461 -2.8896 -5.5630 16 14 8.4705 -1.5784 -7.7781 17 1 9.0599 -0.2324 -7.9931 18 1 9.4672 -2.6188 -8.1376 19 1 7.2647 -1.7322 -8.6312 20 6 8.1686 0.3951 -2.8884 21 6 7.7195 0.2556 -1.4320 22 6 3.5847 -1.1957 -0.0010 23 8 4.2659 -2.3716 -0.0010 24 6 2.1971 -1.1965 -0.0005 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3634 0.8901 -0.5135 27 1 -0.3633 -0.8899 -0.5142 28 1 1.6564 2.1325 0.0004 29 1 4.5103 2.8287 -1.0157 30 1 3.7388 3.2643 0.5281 31 1 5.2829 2.3789 0.5235 32 1 6.1482 -0.8771 0.5129 33 1 6.1429 0.9028 0.5129 34 1 6.4526 -2.0679 -1.6037 35 1 4.8467 -1.4058 -1.9915 36 1 5.7747 -0.3224 -4.0148 37 1 6.0700 -2.0781 -4.0485 38 1 8.3653 -1.7271 -3.2141 39 1 7.2930 -3.6174 -6.1857 40 1 7.6560 1.2401 -3.3479 41 1 9.2454 0.5601 -2.9229 42 1 7.9516 1.1729 -0.8910 43 1 8.2427 -0.5813 -0.9693 44 1 4.4631 -2.7119 0.8823 45 1 1.6571 -2.1318 -0.0001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231846804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:00 Heat of formation + Delta-G solvation = -52.270222 kcal Electronic energy + Delta-G solvation = -23755.356498 eV Core-core repulsion = 20543.078503 eV Total energy + Delta-G solvation = -3212.277994 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.28306 -39.45153 -37.93114 -36.08079 -34.60476 -33.01591 -31.62174 -31.33771 -29.35277 -27.95345 -27.28800 -25.14091 -23.70757 -23.03464 -22.79936 -20.96371 -20.31516 -18.77296 -18.43742 -17.30183 -17.04571 -16.72056 -16.34414 -15.78199 -15.55983 -14.94127 -14.78384 -14.61332 -14.34572 -14.24398 -14.17191 -13.86426 -13.59018 -13.42757 -13.39884 -13.05948 -12.87249 -12.84962 -12.47791 -12.39881 -12.18714 -12.12580 -12.05479 -11.94332 -11.83254 -11.37534 -11.19912 -10.79963 -10.63127 -10.38213 -9.44577 -9.39238 -9.07317 -8.07609 -6.21818 0.33554 0.41355 1.39114 1.40396 1.52478 2.43444 2.61195 3.18664 3.25429 3.33601 3.82281 3.91037 4.08184 4.15877 4.27541 4.33206 4.42632 4.44118 4.47710 4.59383 4.68050 4.74450 4.76516 4.79790 4.85217 4.93723 4.95147 4.98189 5.00973 5.11996 5.14300 5.21647 5.24868 5.33510 5.41266 5.48184 5.58822 5.62461 5.63633 5.75139 5.99241 6.02578 6.04359 6.30655 6.37983 6.40422 6.88085 6.90878 7.46129 8.97209 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020032 B = 0.004186 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.399462 B = 6686.594826 C = 7104.850128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.073 4.073 3 C -0.142 4.142 4 C -0.055 4.055 5 C -0.110 4.110 6 C -0.126 4.126 7 C 0.099 3.901 8 N -0.530 5.530 9 C 0.088 3.912 10 C -0.093 4.093 11 C 0.045 3.955 12 C -0.532 4.532 13 H 0.053 0.947 14 C 0.009 3.991 15 N -0.920 5.920 16 Si 0.955 3.045 17 H -0.265 1.265 18 H -0.279 1.279 19 H -0.282 1.282 20 C -0.098 4.098 21 C 0.066 3.934 22 C 0.108 3.892 23 O -0.508 6.508 24 C -0.172 4.172 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.145 0.855 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.034 0.966 33 H 0.101 0.899 34 H 0.007 0.993 35 H 0.060 0.940 36 H 0.023 0.977 37 H 0.054 0.946 38 H -0.015 1.015 39 H 0.259 0.741 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.094 0.906 43 H 0.019 0.981 44 H 0.400 0.600 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.430 8.028 16.791 21.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.074 4.074 3 C -0.159 4.159 4 C -0.056 4.056 5 C -0.166 4.166 6 C -0.127 4.127 7 C -0.027 4.027 8 N -0.255 5.255 9 C -0.040 4.040 10 C -0.132 4.132 11 C 0.026 3.974 12 C -0.570 4.570 13 H 0.071 0.929 14 C -0.189 4.189 15 N -0.560 5.560 16 Si 0.781 3.219 17 H -0.189 1.189 18 H -0.205 1.205 19 H -0.207 1.207 20 C -0.136 4.136 21 C -0.062 4.062 22 C 0.063 3.937 23 O -0.320 6.320 24 C -0.190 4.190 25 H 0.104 0.896 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.163 0.837 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.119 0.881 34 H 0.025 0.975 35 H 0.078 0.922 36 H 0.042 0.958 37 H 0.072 0.928 38 H 0.004 0.996 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.112 0.888 43 H 0.037 0.963 44 H 0.258 0.742 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.716 8.298 15.880 21.408 hybrid contribution 0.809 -1.466 -0.382 1.718 sum -10.907 6.832 15.498 20.145 Atomic orbital electron populations 1.20831 0.88939 1.03527 1.03383 1.20096 0.97580 0.92183 0.97524 1.21194 0.93229 0.98529 1.02986 1.19915 0.94020 0.95038 0.96606 1.20831 1.00170 0.92905 1.02683 1.20028 0.95701 0.92791 1.04222 1.20929 0.90857 1.01569 0.89386 1.61984 1.14018 1.34899 1.14578 1.21825 0.98945 0.88781 0.94428 1.21412 0.98196 1.00014 0.93536 1.18651 0.92303 0.92472 0.93925 1.21636 1.39959 1.00187 0.95226 0.92902 1.25798 0.95157 0.94994 1.02930 1.70063 1.44719 1.05245 1.35958 0.85549 0.77876 0.78317 0.80185 1.18944 1.20531 1.20750 1.21526 0.99212 0.98485 0.94336 1.22082 0.86835 1.00191 0.97076 1.18501 0.90283 0.85047 0.99857 1.84922 1.76409 1.36216 1.34489 1.21401 0.93041 0.99252 1.05323 0.89586 0.90359 0.91348 0.83741 0.91487 0.89743 0.90837 0.94773 0.88120 0.97521 0.92166 0.95809 0.92768 0.99642 0.93197 0.93005 0.92551 0.88811 0.96297 0.74173 0.85039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.66 10.01 71.24 0.71 -0.95 16 2 C -0.07 -1.62 5.88 -19.88 -0.12 -1.73 16 3 C -0.14 -3.11 9.35 22.28 0.21 -2.90 16 4 C -0.06 -1.37 5.88 -19.88 -0.12 -1.48 16 5 C -0.11 -2.21 9.60 71.24 0.68 -1.53 16 6 C -0.13 -3.59 4.90 -19.77 -0.10 -3.69 16 7 C 0.10 2.88 4.55 85.56 0.39 3.27 16 8 N -0.53 -19.44 4.65 -900.91 -4.19 -23.62 16 9 C 0.09 3.88 4.40 86.32 0.38 4.26 16 10 C -0.09 -4.91 5.12 30.64 0.16 -4.75 16 11 C 0.05 2.41 2.16 -11.46 -0.02 2.39 16 12 C -0.53 -30.91 8.56 25.60 0.22 -30.69 16 13 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 14 C 0.01 0.54 5.31 84.65 0.45 0.99 16 15 N -0.92 -56.07 11.37 21.45 0.24 -55.83 16 16 Si 0.96 45.46 29.54 68.60 2.03 47.49 16 17 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 18 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 19 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 20 C -0.10 -4.23 5.32 30.65 0.16 -4.07 16 21 C 0.07 2.35 5.46 86.33 0.47 2.82 16 22 C 0.11 3.09 5.42 22.51 0.12 3.21 16 23 O -0.51 -14.53 10.87 -92.32 -1.00 -15.54 16 24 C -0.17 -4.35 9.64 22.37 0.22 -4.14 16 25 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.08 1.01 8.08 -2.39 -0.02 0.99 16 27 H 0.07 1.00 8.08 -2.38 -0.02 0.99 16 28 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 29 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.08 1.26 8.09 -2.39 -0.02 1.24 16 31 H 0.07 1.39 5.94 -2.39 -0.01 1.38 16 32 H 0.03 0.99 7.51 -2.39 -0.02 0.97 16 33 H 0.10 2.42 5.78 -2.39 -0.01 2.40 16 34 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.06 2.69 5.34 -2.39 -0.01 2.67 16 36 H 0.02 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.05 3.22 6.18 -2.39 -0.01 3.21 16 38 H -0.01 -0.87 8.14 -2.38 -0.02 -0.89 16 39 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 40 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.09 2.69 8.02 -2.39 -0.02 2.67 16 43 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.40 7.36 9.06 -74.06 -0.67 6.69 16 45 H 0.13 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -69.77 348.70 1.20 -68.57 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.30 Total: 17.92 kcal Atomic # 6 Polarization: -42.81 SS G_CDS: 3.82 Total: -38.99 kcal Atomic # 7 Polarization: -75.51 SS G_CDS: -3.94 Total: -79.45 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -1.00 Total: -15.54 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -69.77 1.20 -68.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231846804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.299 kcal (2) G-P(sol) polarization free energy of solvation -69.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds