Wall clock time and date at job start Tue Mar 31 2020 05:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38163 * 119.96957 * 2 1 4 4 C 1.38710 * 119.94452 * 179.97438 * 3 2 1 5 5 O 1.35901 * 120.05830 * 179.97438 * 4 3 2 6 6 C 1.38758 * 119.88813 * 359.97438 * 4 3 2 7 7 C 1.38122 * 119.94347 * 0.02562 * 6 4 3 8 8 C 1.50701 * 119.97374 * 180.02562 * 7 6 4 9 9 N 1.46898 * 109.47402 * 90.00069 * 8 7 6 10 10 C 1.46893 * 111.00077 * 190.00346 * 9 8 7 11 11 C 1.50697 * 109.47587 * 162.40966 * 10 9 8 12 12 H 1.08010 * 119.99483 * 354.34589 * 11 10 9 13 13 C 1.37872 * 120.00487 * 174.35486 * 11 10 9 14 14 N 1.31514 * 119.99758 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00122 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47095 * 89.99587 * 15 13 11 17 17 H 1.48500 * 109.47027 * 209.99705 * 15 13 11 18 18 H 1.48502 * 109.47127 * 329.99430 * 15 13 11 19 19 C 1.46901 * 111.00231 * 66.04041 * 9 8 7 20 20 C 1.54893 * 110.47834 * 100.92552 * 19 9 8 21 21 C 1.55238 * 102.58489 * 156.67780 * 20 19 9 22 22 C 1.54266 * 104.23241 * 322.08285 * 21 20 19 23 23 C 1.53876 * 106.59886 * 23.61169 * 22 21 20 24 24 C 1.38237 * 119.97220 * 180.24462 * 2 1 3 25 25 H 1.09001 * 109.47257 * 90.00206 * 1 2 3 26 26 H 1.09004 * 109.47015 * 210.00266 * 1 2 3 27 27 H 1.09000 * 109.47141 * 330.00069 * 1 2 3 28 28 H 1.07998 * 120.03439 * 359.97438 * 3 2 1 29 29 H 0.96697 * 114.00202 * 270.01691 * 5 4 3 30 30 H 1.07993 * 120.02916 * 180.02562 * 6 4 3 31 31 H 1.08999 * 109.46562 * 329.99455 * 8 7 6 32 32 H 1.09007 * 109.46468 * 209.99913 * 8 7 6 33 33 H 1.09002 * 109.47272 * 282.40842 * 10 9 8 34 34 H 1.09004 * 109.47360 * 42.40234 * 10 9 8 35 35 H 0.97002 * 119.99781 * 180.02562 * 14 13 11 36 36 H 1.08998 * 110.43257 * 338.38791 * 19 9 8 37 37 H 1.09008 * 110.75569 * 275.06227 * 20 19 9 38 38 H 1.08994 * 110.76421 * 38.44001 * 20 19 9 39 39 H 1.08999 * 110.46875 * 203.39099 * 21 20 19 40 40 H 1.09008 * 110.58034 * 80.82799 * 21 20 19 41 41 H 1.08996 * 110.02854 * 264.32768 * 22 21 20 42 42 H 1.09001 * 110.07542 * 142.91733 * 22 21 20 43 43 H 1.08999 * 110.03340 * 240.71968 * 23 22 21 44 44 H 1.08992 * 110.03181 * 119.28561 * 23 22 21 45 45 H 1.07998 * 119.94742 * 0.05282 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1969 0.0000 4 6 3.5843 1.1963 0.0005 5 8 4.2655 2.3722 0.0000 6 6 4.2752 -0.0070 0.0016 7 6 3.5806 -1.2009 0.0016 8 6 4.3303 -2.5082 0.0034 9 7 4.5723 -2.9321 1.3889 10 6 5.4996 -4.0703 1.4368 11 6 6.0593 -4.2040 2.8295 12 1 5.8286 -3.4602 3.5780 13 6 6.8661 -5.2757 3.1484 14 7 7.1467 -6.1815 2.2372 15 14 7.5605 -5.4410 4.8747 16 1 6.6163 -6.2199 5.7155 17 1 8.8675 -6.1435 4.8173 18 1 7.7497 -4.0909 5.4635 19 6 3.3104 -3.2519 2.0696 20 6 3.0934 -4.7848 2.1167 21 6 2.1325 -4.9535 3.3242 22 6 2.6258 -3.9120 4.3498 23 6 3.3748 -2.8301 3.5521 24 6 2.1976 -1.1975 -0.0051 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6573 2.1322 -0.0004 29 1 4.4628 2.7121 -0.8835 30 1 5.3551 -0.0102 0.0025 31 1 5.2836 -2.3809 -0.5096 32 1 3.7394 -3.2664 -0.5107 33 1 4.9679 -4.9836 1.1697 34 1 6.3145 -3.9051 0.7320 35 1 7.7140 -6.9356 2.4616 36 1 2.4740 -2.7633 1.5699 37 1 2.6271 -5.1374 1.1966 38 1 4.0352 -5.3030 2.2969 39 1 2.2100 -5.9600 3.7352 40 1 1.1050 -4.7410 3.0289 41 1 3.3004 -4.3828 5.0649 42 1 1.7772 -3.4704 4.8723 43 1 4.4128 -2.7758 3.8801 44 1 2.8891 -1.8637 3.6868 45 1 1.6563 -2.1320 -0.0100 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232879672.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:22 Heat of formation + Delta-G solvation = -15.324456 kcal Electronic energy + Delta-G solvation = -23870.396143 eV Core-core repulsion = 20659.720237 eV Total energy + Delta-G solvation = -3210.675906 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.88219 -38.42532 -36.81350 -34.68105 -32.99770 -31.99175 -30.10304 -27.99947 -27.34127 -27.19771 -26.68904 -24.12268 -22.15766 -21.70101 -20.49597 -19.64821 -18.37974 -17.73911 -16.46723 -16.11958 -15.88815 -15.33942 -15.00123 -14.81701 -14.42312 -13.98850 -13.52601 -13.31242 -13.03943 -13.00038 -12.63577 -12.56551 -12.22321 -12.00587 -11.66706 -11.49986 -11.32461 -11.03561 -10.89071 -10.82155 -10.66091 -10.47891 -10.32192 -10.27063 -10.25217 -10.06444 -9.50321 -9.23402 -8.93537 -8.49578 -8.38864 -8.35053 -7.11930 -6.00032 -3.99703 1.39957 1.48916 3.32853 3.39771 3.44019 3.72938 4.25223 4.45631 4.86545 4.93666 5.04935 5.25886 5.34274 5.36871 5.39442 5.44392 5.46817 5.54632 5.61874 5.66804 5.78938 5.85328 5.98434 6.11487 6.17480 6.24777 6.25830 6.30240 6.32133 6.46127 6.55644 6.57393 6.60395 6.64993 6.73407 6.84019 6.97721 7.01511 7.07845 7.16415 7.39578 7.51477 7.73388 7.95591 8.16381 8.24320 8.57951 9.09684 9.63896 11.10034 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017785 B = 0.004937 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.010749 B = 5669.740293 C = 6377.556784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.075 4.075 3 C -0.156 4.156 4 C 0.103 3.897 5 O -0.500 6.500 6 C -0.128 4.128 7 C -0.039 4.039 8 C 0.088 3.912 9 N -0.524 5.524 10 C 0.181 3.819 11 C -0.495 4.495 12 H 0.070 0.930 13 C 0.055 3.945 14 N -0.900 5.900 15 Si 0.890 3.110 16 H -0.282 1.282 17 H -0.288 1.288 18 H -0.273 1.273 19 C 0.090 3.910 20 C -0.165 4.165 21 C -0.116 4.116 22 C -0.118 4.118 23 C -0.113 4.113 24 C -0.124 4.124 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.121 0.879 29 H 0.385 0.615 30 H 0.129 0.871 31 H 0.077 0.923 32 H 0.033 0.967 33 H 0.017 0.983 34 H 0.020 0.980 35 H 0.260 0.740 36 H 0.063 0.937 37 H 0.042 0.958 38 H 0.123 0.877 39 H 0.055 0.945 40 H 0.048 0.952 41 H 0.060 0.940 42 H 0.047 0.953 43 H 0.093 0.907 44 H 0.042 0.958 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.777 10.277 -5.777 16.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.075 4.075 3 C -0.174 4.174 4 C 0.058 3.942 5 O -0.310 6.310 6 C -0.147 4.147 7 C -0.040 4.040 8 C -0.040 4.040 9 N -0.247 5.247 10 C 0.056 3.944 11 C -0.534 4.534 12 H 0.088 0.912 13 C -0.145 4.145 14 N -0.541 5.541 15 Si 0.718 3.282 16 H -0.208 1.208 17 H -0.214 1.214 18 H -0.198 1.198 19 C -0.019 4.019 20 C -0.203 4.203 21 C -0.155 4.155 22 C -0.156 4.156 23 C -0.151 4.151 24 C -0.142 4.142 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.139 0.861 29 H 0.240 0.760 30 H 0.147 0.853 31 H 0.096 0.904 32 H 0.051 0.949 33 H 0.034 0.966 34 H 0.038 0.962 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.140 0.860 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.111 0.889 44 H 0.060 0.940 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.461 10.444 -4.942 16.274 hybrid contribution 0.131 -0.774 0.042 0.786 sum -11.330 9.670 -4.900 15.681 Atomic orbital electron populations 1.20767 0.91251 1.02756 1.02073 1.19672 0.95811 0.92585 0.99461 1.21142 0.93384 0.97968 1.04943 1.18429 0.89769 0.85052 1.00901 1.84843 1.76486 1.36498 1.33135 1.21294 1.00694 0.91080 1.01626 1.19850 0.93131 0.95231 0.95761 1.21073 0.98661 0.91557 0.92704 1.62302 1.11628 1.39931 1.10835 1.20054 0.89930 0.86515 0.97859 1.21259 1.28272 1.07601 0.96233 0.91227 1.24948 0.96618 0.95937 0.97017 1.69952 1.38127 1.12668 1.33311 0.86618 0.78407 0.78231 0.84961 1.20776 1.21421 1.19799 1.22423 0.91035 0.93556 0.94906 1.23487 1.02025 0.98671 0.96085 1.22248 0.97834 0.98553 0.96818 1.22031 0.98769 0.96780 0.97983 1.22268 1.02411 0.95918 0.94531 1.20985 0.93781 0.97337 1.02114 0.91351 0.91444 0.91713 0.86095 0.76008 0.85328 0.90418 0.94925 0.96570 0.96186 0.93063 0.91949 0.93928 0.85952 0.92627 0.93319 0.92095 0.93462 0.88908 0.93957 0.86130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.01 36.01 0.36 -0.71 16 2 C -0.08 -0.95 5.88 -104.65 -0.62 -1.57 16 3 C -0.16 -2.00 9.64 -39.43 -0.38 -2.38 16 4 C 0.10 1.44 6.71 -39.21 -0.26 1.17 16 5 O -0.50 -6.24 13.50 -19.43 -0.26 -6.50 16 6 C -0.13 -1.97 9.64 -39.43 -0.38 -2.35 16 7 C -0.04 -0.62 5.02 -104.64 -0.53 -1.14 16 8 C 0.09 1.56 5.07 -4.98 -0.03 1.54 16 9 N -0.52 -10.91 4.34 -227.53 -0.99 -11.89 16 10 C 0.18 4.45 4.27 -4.98 -0.02 4.43 16 11 C -0.50 -13.16 7.41 -34.44 -0.26 -13.42 16 12 H 0.07 1.87 5.20 -52.48 -0.27 1.59 16 13 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 14 N -0.90 -25.85 13.29 55.43 0.74 -25.12 16 15 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 19 C 0.09 1.72 2.69 -66.05 -0.18 1.54 16 20 C -0.16 -3.22 5.28 -24.55 -0.13 -3.35 16 21 C -0.12 -1.99 6.84 -24.88 -0.17 -2.16 16 22 C -0.12 -2.05 6.80 -25.61 -0.17 -2.23 16 23 C -0.11 -2.18 6.17 -25.61 -0.16 -2.34 16 24 C -0.12 -1.76 7.74 -39.56 -0.31 -2.07 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 27 H 0.06 0.55 8.08 -51.93 -0.42 0.14 16 28 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 29 H 0.38 2.75 9.06 45.56 0.41 3.17 16 30 H 0.13 1.99 8.06 -52.49 -0.42 1.56 16 31 H 0.08 1.37 7.79 -51.93 -0.40 0.97 16 32 H 0.03 0.56 8.06 -51.93 -0.42 0.14 16 33 H 0.02 0.43 5.38 -51.93 -0.28 0.15 16 34 H 0.02 0.53 7.78 -51.93 -0.40 0.13 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.06 1.10 4.65 -51.93 -0.24 0.86 16 37 H 0.04 0.78 8.14 -51.92 -0.42 0.36 16 38 H 0.12 2.89 4.53 -51.93 -0.24 2.66 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.09 2.05 5.08 -51.93 -0.26 1.78 16 44 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.12 1.63 7.18 -52.49 -0.38 1.25 16 LS Contribution 348.91 15.07 5.26 5.26 Total: -1.00 -29.65 348.91 -9.86 -39.51 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -6.26 Total: 6.02 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: -3.32 Total: -23.62 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: -0.25 Total: -37.01 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -0.26 Total: -6.50 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.65 -9.86 -39.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232879672.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.181 kcal (2) G-P(sol) polarization free energy of solvation -29.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds