Wall clock time and date at job start Tue Mar 31 2020 05:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38163 * 119.96957 * 2 1 4 4 C 1.38710 * 119.94452 * 179.97438 * 3 2 1 5 5 O 1.35901 * 120.05830 * 179.97438 * 4 3 2 6 6 C 1.38758 * 119.88813 * 359.97438 * 4 3 2 7 7 C 1.38122 * 119.94347 * 0.02562 * 6 4 3 8 8 C 1.50701 * 119.97374 * 180.02562 * 7 6 4 9 9 N 1.46898 * 109.47402 * 90.00069 * 8 7 6 10 10 C 1.46893 * 111.00077 * 190.00346 * 9 8 7 11 11 C 1.50697 * 109.47587 * 162.40966 * 10 9 8 12 12 H 1.08010 * 119.99483 * 354.34589 * 11 10 9 13 13 C 1.37872 * 120.00487 * 174.35486 * 11 10 9 14 14 N 1.31514 * 119.99758 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00122 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47095 * 89.99587 * 15 13 11 17 17 H 1.48500 * 109.47027 * 209.99705 * 15 13 11 18 18 H 1.48502 * 109.47127 * 329.99430 * 15 13 11 19 19 C 1.46901 * 111.00231 * 66.04041 * 9 8 7 20 20 C 1.54893 * 110.47834 * 100.92552 * 19 9 8 21 21 C 1.55238 * 102.58489 * 156.67780 * 20 19 9 22 22 C 1.54266 * 104.23241 * 322.08285 * 21 20 19 23 23 C 1.53876 * 106.59886 * 23.61169 * 22 21 20 24 24 C 1.38237 * 119.97220 * 180.24462 * 2 1 3 25 25 H 1.09001 * 109.47257 * 90.00206 * 1 2 3 26 26 H 1.09004 * 109.47015 * 210.00266 * 1 2 3 27 27 H 1.09000 * 109.47141 * 330.00069 * 1 2 3 28 28 H 1.07998 * 120.03439 * 359.97438 * 3 2 1 29 29 H 0.96697 * 114.00202 * 270.01691 * 5 4 3 30 30 H 1.07993 * 120.02916 * 180.02562 * 6 4 3 31 31 H 1.08999 * 109.46562 * 329.99455 * 8 7 6 32 32 H 1.09007 * 109.46468 * 209.99913 * 8 7 6 33 33 H 1.09002 * 109.47272 * 282.40842 * 10 9 8 34 34 H 1.09004 * 109.47360 * 42.40234 * 10 9 8 35 35 H 0.97002 * 119.99781 * 180.02562 * 14 13 11 36 36 H 1.08998 * 110.43257 * 338.38791 * 19 9 8 37 37 H 1.09008 * 110.75569 * 275.06227 * 20 19 9 38 38 H 1.08994 * 110.76421 * 38.44001 * 20 19 9 39 39 H 1.08999 * 110.46875 * 203.39099 * 21 20 19 40 40 H 1.09008 * 110.58034 * 80.82799 * 21 20 19 41 41 H 1.08996 * 110.02854 * 264.32768 * 22 21 20 42 42 H 1.09001 * 110.07542 * 142.91733 * 22 21 20 43 43 H 1.08999 * 110.03340 * 240.71968 * 23 22 21 44 44 H 1.08992 * 110.03181 * 119.28561 * 23 22 21 45 45 H 1.07998 * 119.94742 * 0.05282 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1969 0.0000 4 6 3.5843 1.1963 0.0005 5 8 4.2655 2.3722 0.0000 6 6 4.2752 -0.0070 0.0016 7 6 3.5806 -1.2009 0.0016 8 6 4.3303 -2.5082 0.0034 9 7 4.5723 -2.9321 1.3889 10 6 5.4996 -4.0703 1.4368 11 6 6.0593 -4.2040 2.8295 12 1 5.8286 -3.4602 3.5780 13 6 6.8661 -5.2757 3.1484 14 7 7.1467 -6.1815 2.2372 15 14 7.5605 -5.4410 4.8747 16 1 6.6163 -6.2199 5.7155 17 1 8.8675 -6.1435 4.8173 18 1 7.7497 -4.0909 5.4635 19 6 3.3104 -3.2519 2.0696 20 6 3.0934 -4.7848 2.1167 21 6 2.1325 -4.9535 3.3242 22 6 2.6258 -3.9120 4.3498 23 6 3.3748 -2.8301 3.5521 24 6 2.1976 -1.1975 -0.0051 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6573 2.1322 -0.0004 29 1 4.4628 2.7121 -0.8835 30 1 5.3551 -0.0102 0.0025 31 1 5.2836 -2.3809 -0.5096 32 1 3.7394 -3.2664 -0.5107 33 1 4.9679 -4.9836 1.1697 34 1 6.3145 -3.9051 0.7320 35 1 7.7140 -6.9356 2.4616 36 1 2.4740 -2.7633 1.5699 37 1 2.6271 -5.1374 1.1966 38 1 4.0352 -5.3030 2.2969 39 1 2.2100 -5.9600 3.7352 40 1 1.1050 -4.7410 3.0289 41 1 3.3004 -4.3828 5.0649 42 1 1.7772 -3.4704 4.8723 43 1 4.4128 -2.7758 3.8801 44 1 2.8891 -1.8637 3.6868 45 1 1.6563 -2.1320 -0.0100 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232879672.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:21 Heat of formation + Delta-G solvation = -33.298759 kcal Electronic energy + Delta-G solvation = -23871.175567 eV Core-core repulsion = 20659.720237 eV Total energy + Delta-G solvation = -3211.455330 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.04484 -39.87675 -37.86158 -36.13668 -34.80629 -33.37463 -31.29560 -29.52729 -29.04474 -28.64002 -27.70539 -25.74856 -23.81154 -22.90804 -21.67865 -21.11073 -19.96297 -18.83089 -18.37624 -17.20171 -17.08683 -16.92256 -16.68545 -16.11294 -15.89673 -15.50334 -14.71150 -14.66671 -14.34692 -14.17419 -14.11640 -13.85192 -13.50347 -13.32729 -13.11696 -12.86839 -12.75730 -12.66607 -12.40822 -12.30180 -12.16461 -12.04380 -11.90900 -11.74165 -11.66572 -11.44739 -11.17411 -10.93697 -10.74300 -10.49252 -9.59536 -9.42675 -8.81834 -8.11570 -6.17416 0.33313 0.40507 1.40023 1.41303 1.51486 2.42870 2.66014 3.20890 3.27462 3.44979 3.83455 3.87870 3.93334 4.00666 4.22196 4.24205 4.35829 4.39554 4.51159 4.59206 4.68356 4.71442 4.74092 4.80633 4.88886 4.89468 4.96377 4.97837 5.05233 5.10453 5.19837 5.22625 5.29606 5.30516 5.34214 5.48220 5.53362 5.57473 5.60539 5.71293 5.75183 5.91309 5.97393 6.21467 6.49061 6.74157 6.90139 6.99605 7.50194 8.98093 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017785 B = 0.004937 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.010749 B = 5669.740293 C = 6377.556784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.068 4.068 3 C -0.155 4.155 4 C 0.104 3.896 5 O -0.510 6.510 6 C -0.150 4.150 7 C -0.052 4.052 8 C 0.091 3.909 9 N -0.533 5.533 10 C 0.198 3.802 11 C -0.496 4.496 12 H 0.066 0.934 13 C 0.008 3.992 14 N -0.934 5.934 15 Si 0.949 3.051 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.270 1.270 19 C 0.092 3.908 20 C -0.165 4.165 21 C -0.110 4.110 22 C -0.115 4.115 23 C -0.113 4.113 24 C -0.132 4.132 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.146 0.854 29 H 0.408 0.592 30 H 0.115 0.885 31 H 0.066 0.934 32 H 0.036 0.964 33 H 0.001 0.999 34 H -0.011 1.011 35 H 0.260 0.740 36 H 0.085 0.915 37 H 0.050 0.950 38 H 0.077 0.923 39 H 0.055 0.945 40 H 0.079 0.921 41 H 0.044 0.956 42 H 0.078 0.922 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.594 11.872 -5.169 19.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.068 4.068 3 C -0.173 4.173 4 C 0.060 3.940 5 O -0.323 6.323 6 C -0.169 4.169 7 C -0.052 4.052 8 C -0.037 4.037 9 N -0.257 5.257 10 C 0.072 3.928 11 C -0.534 4.534 12 H 0.084 0.916 13 C -0.190 4.190 14 N -0.576 5.576 15 Si 0.775 3.225 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.194 1.194 19 C -0.017 4.017 20 C -0.203 4.203 21 C -0.148 4.148 22 C -0.153 4.153 23 C -0.151 4.151 24 C -0.151 4.151 25 H 0.103 0.897 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.164 0.836 29 H 0.267 0.733 30 H 0.133 0.867 31 H 0.084 0.916 32 H 0.055 0.945 33 H 0.019 0.981 34 H 0.007 0.993 35 H 0.069 0.931 36 H 0.103 0.897 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.098 0.902 41 H 0.063 0.937 42 H 0.097 0.903 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.284 12.063 -4.347 19.195 hybrid contribution 0.987 -1.157 -0.230 1.538 sum -13.297 10.906 -4.577 17.796 Atomic orbital electron populations 1.20844 0.88620 1.03773 1.03475 1.20032 0.97630 0.91725 0.97457 1.21442 0.92839 0.99179 1.03855 1.18488 0.90446 0.84845 1.00239 1.84776 1.76455 1.35743 1.35334 1.21296 1.00281 0.91998 1.03373 1.19637 0.93927 0.93931 0.97731 1.21032 0.98703 0.93059 0.90904 1.62185 1.12407 1.38002 1.13058 1.19701 0.89688 0.87310 0.96104 1.21491 1.27796 1.07203 0.96935 0.91632 1.25673 0.97098 0.95766 1.00449 1.70069 1.39070 1.13293 1.35150 0.85684 0.77747 0.78221 0.80852 1.19990 1.21212 1.19444 1.22501 0.90692 0.93483 0.94976 1.23330 1.00742 0.98407 0.97816 1.22240 0.98678 0.98554 0.95290 1.22019 0.99326 0.96251 0.97668 1.22223 1.00778 0.97397 0.94727 1.21084 0.92928 0.98552 1.02494 0.89651 0.90907 0.90258 0.83639 0.73316 0.86693 0.91562 0.94535 0.98140 0.99325 0.93120 0.89737 0.93097 0.90462 0.92631 0.90192 0.93691 0.90311 0.92309 0.92593 0.85377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.65 10.01 71.24 0.71 -0.94 16 2 C -0.07 -1.52 5.88 -19.88 -0.12 -1.63 16 3 C -0.15 -3.50 9.64 22.36 0.22 -3.29 16 4 C 0.10 2.75 6.71 22.51 0.15 2.90 16 5 O -0.51 -11.85 13.50 -92.44 -1.25 -13.10 16 6 C -0.15 -4.65 9.64 22.37 0.22 -4.43 16 7 C -0.05 -1.62 5.02 -19.88 -0.10 -1.72 16 8 C 0.09 3.33 5.07 85.56 0.43 3.76 16 9 N -0.53 -22.93 4.34 -873.78 -3.80 -26.73 16 10 C 0.20 10.25 4.27 85.56 0.37 10.62 16 11 C -0.50 -27.39 7.41 25.60 0.19 -27.20 16 12 H 0.07 3.64 5.20 -2.91 -0.02 3.62 16 13 C 0.01 0.42 5.46 84.65 0.46 0.88 16 14 N -0.93 -55.56 13.29 21.45 0.28 -55.28 16 15 Si 0.95 44.75 29.54 68.60 2.03 46.77 16 16 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 17 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 18 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 19 C 0.09 3.48 2.69 45.99 0.12 3.60 16 20 C -0.16 -6.42 5.28 32.01 0.17 -6.25 16 21 C -0.11 -3.53 6.84 31.79 0.22 -3.31 16 22 C -0.11 -3.79 6.80 31.32 0.21 -3.58 16 23 C -0.11 -4.27 6.17 31.32 0.19 -4.07 16 24 C -0.13 -3.50 7.74 22.28 0.17 -3.33 16 25 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.07 1.04 8.09 -2.39 -0.02 1.02 16 27 H 0.08 0.99 8.08 -2.39 -0.02 0.97 16 28 H 0.15 2.57 8.06 -2.91 -0.02 2.54 16 29 H 0.41 5.06 9.06 -74.06 -0.67 4.39 16 30 H 0.11 3.74 8.06 -2.91 -0.02 3.72 16 31 H 0.07 2.51 7.79 -2.39 -0.02 2.49 16 32 H 0.04 1.29 8.06 -2.38 -0.02 1.27 16 33 H 0.00 0.06 5.38 -2.39 -0.01 0.05 16 34 H -0.01 -0.64 7.78 -2.38 -0.02 -0.66 16 35 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 36 H 0.08 2.84 4.65 -2.39 -0.01 2.83 16 37 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 38 H 0.08 3.78 4.53 -2.39 -0.01 3.77 16 39 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 41 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.06 2.63 5.08 -2.39 -0.01 2.61 16 44 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.13 3.15 7.18 -2.91 -0.02 3.12 16 Total: -1.00 -65.76 348.91 1.20 -64.56 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: 0.32 Total: 21.77 kcal Atomic # 6 Polarization: -41.61 SS G_CDS: 3.62 Total: -37.99 kcal Atomic # 7 Polarization: -78.50 SS G_CDS: -3.51 Total: -82.01 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: -1.25 Total: -13.10 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -65.76 1.20 -64.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232879672.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.258 kcal (2) G-P(sol) polarization free energy of solvation -65.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds