Wall clock time and date at job start Tue Mar 31 2020 05:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38162 * 120.02559 * 2 1 4 4 C 1.38250 * 120.05089 * 180.25264 * 3 2 1 5 5 C 1.38290 * 120.11254 * 359.45127 * 4 3 2 6 6 C 1.50697 * 119.97417 * 180.27164 * 5 4 3 7 7 N 1.46903 * 109.46913 * 84.01826 * 6 5 4 8 8 C 1.46895 * 111.00135 * 196.68044 * 7 6 5 9 9 C 1.50703 * 109.47085 * 178.66828 * 8 7 6 10 10 H 1.07995 * 120.00043 * 353.93968 * 9 8 7 11 11 C 1.37875 * 120.00046 * 173.94087 * 9 8 7 12 12 N 1.31509 * 120.00146 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 120.00132 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.47062 * 89.99427 * 13 11 9 15 15 H 1.48493 * 109.47409 * 209.99971 * 13 11 9 16 16 H 1.48499 * 109.46867 * 329.99909 * 13 11 9 17 17 C 1.46901 * 110.99671 * 72.72678 * 7 6 5 18 18 C 1.54264 * 110.03534 * 217.90913 * 17 7 6 19 19 C 1.54961 * 104.16084 * 217.13947 * 18 17 7 20 20 C 1.54884 * 102.78019 * 37.88913 * 19 18 17 21 21 C 1.53881 * 110.03170 * 100.69152 * 17 7 6 22 22 C 1.38124 * 120.05417 * 0.25806 * 5 4 3 23 23 C 1.38705 * 120.02513 * 179.68852 * 2 1 3 24 24 O 1.35901 * 120.06059 * 359.97438 * 23 2 1 25 25 H 1.08996 * 109.46789 * 270.31809 * 1 2 3 26 26 H 1.09003 * 109.47047 * 30.31189 * 1 2 3 27 27 H 1.09003 * 109.47123 * 150.31680 * 1 2 3 28 28 H 1.07992 * 119.97723 * 0.02562 * 3 2 1 29 29 H 1.07998 * 119.94434 * 179.72962 * 4 3 2 30 30 H 1.09000 * 109.47483 * 204.02142 * 6 5 4 31 31 H 1.09000 * 109.47202 * 324.02595 * 6 5 4 32 32 H 1.09000 * 109.47059 * 298.66896 * 8 7 6 33 33 H 1.08992 * 109.47173 * 58.66872 * 8 7 6 34 34 H 0.97005 * 120.00024 * 180.02562 * 12 11 9 35 35 H 1.09006 * 110.02004 * 339.30133 * 17 7 6 36 36 H 1.09000 * 110.48665 * 335.78513 * 18 17 7 37 37 H 1.08995 * 110.48536 * 98.42758 * 18 17 7 38 38 H 1.09006 * 110.72031 * 279.56886 * 19 18 17 39 39 H 1.09002 * 110.92628 * 156.29664 * 19 18 17 40 40 H 1.08999 * 110.48719 * 203.40743 * 20 19 18 41 41 H 1.09000 * 110.60419 * 80.81710 * 20 19 18 42 42 H 1.08996 * 110.03501 * 238.56992 * 21 17 7 43 43 H 1.08996 * 110.02934 * 359.95045 * 21 17 7 44 44 H 1.07997 * 120.02456 * 179.97438 * 22 5 4 45 45 H 0.96696 * 114.00780 * 270.03203 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1968 -0.0053 5 6 4.2753 0.0009 0.0009 6 6 5.7822 0.0053 0.0013 7 7 6.2710 0.1579 1.3782 8 6 7.6839 0.5596 1.3938 9 6 8.1398 0.7377 2.8191 10 1 7.4269 0.6655 3.6271 11 6 9.4671 0.9928 3.0916 12 7 9.8649 1.1487 4.3353 13 14 10.7002 1.1184 1.6939 14 1 10.7815 2.5270 1.2307 15 1 12.0352 0.6761 2.1704 16 1 10.2638 0.2521 0.5696 17 6 6.0659 -1.0755 2.1493 18 6 5.6583 -0.7321 3.5970 19 6 6.3691 -1.8080 4.4563 20 6 7.7305 -1.9764 3.7372 21 6 7.3827 -1.8668 2.2382 22 6 3.5887 -1.1976 0.0070 23 6 2.2011 -1.2009 0.0065 24 8 1.5234 -2.3788 0.0135 25 1 -0.3633 0.0057 1.0276 26 1 -0.3633 0.8872 -0.5187 27 1 -0.3633 -0.8928 -0.5089 28 1 1.6585 2.1315 0.0004 29 1 4.1196 2.1329 -0.0097 30 1 6.1485 -0.9344 -0.4122 31 1 6.1434 0.8349 -0.6064 32 1 8.2862 -0.2114 0.9133 33 1 7.8002 1.4999 0.8550 34 1 10.7986 1.3286 4.5270 35 1 5.2947 -1.6857 1.6791 36 1 6.0096 0.2641 3.8661 37 1 4.5770 -0.8013 3.7154 38 1 5.8083 -2.7426 4.4456 39 1 6.5130 -1.4574 5.4784 40 1 8.1606 -2.9532 3.9585 41 1 8.4188 -1.1828 4.0281 42 1 7.2503 -2.8611 1.8119 43 1 8.1736 -1.3360 1.7084 44 1 4.1314 -2.1313 0.0114 45 1 1.3271 -2.7146 0.8988 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233233969.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:24 Heat of formation + Delta-G solvation = -19.206986 kcal Electronic energy + Delta-G solvation = -24026.140653 eV Core-core repulsion = 20815.296388 eV Total energy + Delta-G solvation = -3210.844265 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.08737 -40.14126 -37.71385 -35.89785 -34.69009 -33.53151 -30.83593 -30.41419 -29.32220 -28.94685 -27.20574 -24.68529 -23.64339 -23.32723 -21.81581 -21.40136 -19.79023 -19.03030 -18.51308 -17.25654 -16.89961 -16.74449 -16.50730 -16.11569 -15.99735 -15.33143 -14.98153 -14.77558 -14.35099 -14.16780 -14.09007 -13.98344 -13.43386 -13.17314 -13.10401 -12.93913 -12.79058 -12.54359 -12.41163 -12.20177 -12.07474 -11.89055 -11.80613 -11.67907 -11.55839 -11.51480 -11.20158 -10.97316 -10.66509 -10.38787 -9.66075 -9.30536 -8.86129 -8.10521 -6.07452 0.36731 0.43267 1.35596 1.39686 1.44858 2.42490 2.65629 3.21375 3.36222 3.40697 3.86947 3.92547 3.99999 4.03417 4.11756 4.28770 4.31369 4.49860 4.58696 4.63811 4.68049 4.74007 4.83250 4.84621 4.85871 4.89175 4.94444 4.99512 5.06587 5.11581 5.14012 5.19324 5.30005 5.32282 5.36129 5.45778 5.56174 5.62963 5.67009 5.75002 5.76287 5.97688 5.99201 6.20803 6.50981 6.78563 6.88972 7.03870 7.51116 9.02594 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021922 B = 0.004752 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.973284 B = 5890.776552 C = 6467.315002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.123 4.123 3 C -0.108 4.108 4 C -0.114 4.114 5 C -0.064 4.064 6 C 0.087 3.913 7 N -0.525 5.525 8 C 0.158 3.842 9 C -0.490 4.490 10 H 0.080 0.920 11 C 0.023 3.977 12 N -0.941 5.941 13 Si 0.913 3.087 14 H -0.275 1.275 15 H -0.292 1.292 16 H -0.255 1.255 17 C 0.101 3.899 18 C -0.104 4.104 19 C -0.111 4.111 20 C -0.121 4.121 21 C -0.151 4.151 22 C -0.145 4.145 23 C 0.095 3.905 24 O -0.504 6.504 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.146 0.854 29 H 0.125 0.875 30 H 0.038 0.962 31 H 0.079 0.921 32 H 0.002 0.998 33 H 0.018 0.982 34 H 0.259 0.741 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.067 0.933 42 H 0.052 0.948 43 H 0.073 0.927 44 H 0.123 0.877 45 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.288 -5.239 -8.248 18.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.124 4.124 3 C -0.126 4.126 4 C -0.132 4.132 5 C -0.064 4.064 6 C -0.040 4.040 7 N -0.248 5.248 8 C 0.032 3.968 9 C -0.529 4.529 10 H 0.098 0.902 11 C -0.174 4.174 12 N -0.583 5.583 13 Si 0.739 3.261 14 H -0.201 1.201 15 H -0.218 1.218 16 H -0.179 1.179 17 C -0.007 4.007 18 C -0.142 4.142 19 C -0.149 4.149 20 C -0.158 4.158 21 C -0.189 4.189 22 C -0.164 4.164 23 C 0.051 3.949 24 O -0.317 6.317 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.163 0.837 29 H 0.143 0.857 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.019 0.981 33 H 0.036 0.964 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.141 0.859 45 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -16.372 -4.782 -8.554 19.081 hybrid contribution 1.837 -0.419 -0.110 1.887 sum -14.535 -5.202 -8.664 17.703 Atomic orbital electron populations 1.20685 0.89037 1.03478 1.03021 1.20473 0.97946 0.92245 1.01736 1.21170 0.93608 0.98125 0.99692 1.21165 0.94573 0.97815 0.99674 1.19635 0.94799 0.93143 0.98853 1.21092 0.91321 1.00764 0.90870 1.62176 1.19550 1.32223 1.10839 1.20275 0.85646 0.94100 0.96798 1.21541 0.93894 1.44781 0.92641 0.90238 1.25421 0.99727 0.95755 0.96525 1.69996 1.16560 1.52078 1.19714 0.86237 0.79332 0.78945 0.81571 1.20109 1.21846 1.17885 1.22113 0.95455 0.88852 0.94329 1.22464 0.98118 0.99326 0.94244 1.22348 0.96111 0.98543 0.97930 1.22343 0.98079 1.00309 0.95100 1.22821 0.99528 0.98656 0.97942 1.21345 0.93909 0.98078 1.03109 1.18280 0.89381 0.85523 1.01763 1.84719 1.76160 1.35789 1.35016 0.90329 0.90393 0.91186 0.83665 0.85709 0.94375 0.90259 0.98088 0.96355 0.93137 0.90771 0.92218 0.92380 0.90746 0.93270 0.93329 0.91423 0.92886 0.90891 0.85903 0.73685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.67 9.79 71.24 0.70 -0.98 16 2 C -0.12 -2.72 5.89 -19.77 -0.12 -2.84 16 3 C -0.11 -2.45 9.70 22.25 0.22 -2.24 16 4 C -0.11 -3.06 9.72 22.28 0.22 -2.84 16 5 C -0.06 -1.85 5.06 -19.88 -0.10 -1.95 16 6 C 0.09 2.82 5.03 85.56 0.43 3.25 16 7 N -0.52 -20.38 4.39 -875.82 -3.84 -24.22 16 8 C 0.16 7.13 3.28 85.56 0.28 7.41 16 9 C -0.49 -25.62 5.73 25.60 0.15 -25.47 16 10 H 0.08 4.51 4.16 -2.91 -0.01 4.50 16 11 C 0.02 1.24 4.94 84.65 0.42 1.66 16 12 N -0.94 -55.74 13.96 21.45 0.30 -55.44 16 13 Si 0.91 42.76 27.59 68.60 1.89 44.65 16 14 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 15 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 16 H -0.25 -11.23 6.37 99.48 0.63 -10.60 16 17 C 0.10 3.70 2.72 45.64 0.12 3.82 16 18 C -0.10 -3.93 5.88 31.69 0.19 -3.75 16 19 C -0.11 -4.02 6.90 31.91 0.22 -3.80 16 20 C -0.12 -4.91 6.17 31.67 0.20 -4.72 16 21 C -0.15 -5.86 5.63 31.32 0.18 -5.68 16 22 C -0.15 -3.91 8.36 22.37 0.19 -3.73 16 23 C 0.09 2.29 6.68 22.51 0.15 2.44 16 24 O -0.50 -10.30 12.55 -92.43 -1.16 -11.46 16 25 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.08 1.03 8.09 -2.39 -0.02 1.01 16 27 H 0.07 1.12 7.53 -2.39 -0.02 1.10 16 28 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 29 H 0.12 3.29 8.06 -2.91 -0.02 3.27 16 30 H 0.04 1.20 7.94 -2.39 -0.02 1.18 16 31 H 0.08 2.49 7.90 -2.39 -0.02 2.47 16 32 H 0.00 0.09 4.46 -2.39 -0.01 0.08 16 33 H 0.02 0.84 7.78 -2.39 -0.02 0.82 16 34 H 0.26 14.73 8.31 -92.70 -0.77 13.96 16 35 H 0.07 2.43 5.53 -2.38 -0.01 2.42 16 36 H 0.06 2.74 5.40 -2.39 -0.01 2.73 16 37 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 39 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 40 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.07 3.39 5.66 -2.39 -0.01 3.38 16 42 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.07 3.21 3.99 -2.39 -0.01 3.20 16 44 H 0.12 3.21 7.48 -2.91 -0.02 3.19 16 45 H 0.40 4.75 9.06 -74.06 -0.67 4.07 16 Total: -1.00 -62.05 338.81 0.87 -61.17 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 0.25 Total: 24.71 kcal Atomic # 6 Polarization: -42.84 SS G_CDS: 3.43 Total: -39.41 kcal Atomic # 7 Polarization: -76.12 SS G_CDS: -3.54 Total: -79.67 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -1.16 Total: -11.46 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 1.89 Total: 44.65 kcal Total: -62.05 0.87 -61.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233233969.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.967 kcal (2) G-P(sol) polarization free energy of solvation -62.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds