Wall clock time and date at job start Tue Mar 31 2020 05:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42895 * 108.98956 * 2 1 4 4 C 1.54507 * 109.05566 * 241.03972 * 2 1 3 5 5 C 1.50452 * 108.85466 * 162.26541 * 4 2 1 6 6 C 1.54293 * 113.03462 * 92.15454 * 5 4 2 7 7 C 1.54060 * 112.28866 * 318.30351 * 6 5 4 8 8 N 1.44277 * 111.98545 * 318.91585 * 7 6 5 9 9 C 1.46899 * 111.00054 * 219.30981 * 8 7 6 10 10 C 1.50704 * 109.47164 * 48.01516 * 9 8 7 11 11 C 1.37637 * 120.12486 * 259.97723 * 10 9 8 12 12 C 1.38620 * 120.24407 * 180.02562 * 11 10 9 13 13 C 1.38647 * 120.50163 * 359.94960 * 12 11 10 14 14 C 1.37598 * 120.25035 * 359.76972 * 13 12 11 15 15 C 1.40694 * 120.12579 * 80.00030 * 10 9 8 16 16 C 1.41394 * 120.24872 * 359.97438 * 15 10 9 17 17 H 1.07998 * 119.99602 * 28.67238 * 16 15 10 18 18 C 1.39943 * 120.00206 * 208.67164 * 16 15 10 19 19 N 1.30826 * 119.99753 * 195.42091 * 18 16 15 20 20 Si 1.86798 * 120.00301 * 15.42020 * 18 16 15 21 21 H 1.48497 * 109.47431 * 265.60093 * 20 18 16 22 22 H 1.48506 * 109.46845 * 25.59859 * 20 18 16 23 23 H 1.48498 * 109.47594 * 145.59609 * 20 18 16 24 24 C 1.45865 * 109.05326 * 118.95525 * 2 1 3 25 25 H 1.09001 * 109.46972 * 301.04651 * 1 2 3 26 26 H 1.08997 * 109.47538 * 61.04194 * 1 2 3 27 27 H 1.09004 * 109.47698 * 181.04600 * 1 2 3 28 28 H 0.96709 * 113.99436 * 298.95698 * 3 2 1 29 29 H 1.09007 * 109.57676 * 282.07905 * 4 2 1 30 30 H 1.09002 * 109.57530 * 42.32637 * 4 2 1 31 31 H 1.09001 * 108.77041 * 213.07107 * 5 4 2 32 32 H 1.08999 * 108.77190 * 331.35775 * 5 4 2 33 33 H 1.09005 * 108.91964 * 79.02793 * 6 5 4 34 34 H 1.09004 * 108.92132 * 197.67186 * 6 5 4 35 35 H 1.09004 * 108.98092 * 198.26703 * 7 6 5 36 36 H 1.09002 * 108.98201 * 79.55966 * 7 6 5 37 37 H 1.08992 * 109.47245 * 288.01435 * 9 8 7 38 38 H 1.08997 * 109.46931 * 168.01223 * 9 8 7 39 39 H 1.07997 * 119.88126 * 0.02562 * 11 10 9 40 40 H 1.07998 * 119.74599 * 179.97438 * 12 11 10 41 41 H 1.08009 * 119.87439 * 180.02562 * 13 12 11 42 42 H 1.08003 * 120.13023 * 180.25202 * 14 13 12 43 43 H 0.97005 * 119.99496 * 179.97438 * 19 18 16 44 44 H 1.09004 * 108.79698 * 60.98252 * 24 2 1 45 45 H 1.08996 * 108.70509 * 302.69055 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 1.9949 1.3512 0.0000 4 6 2.0344 -0.7071 -1.2778 5 6 3.4750 -0.3358 -1.5025 6 6 4.4625 -1.3313 -0.8587 7 6 4.0119 -1.7756 0.5459 8 7 3.4801 -0.6770 1.3152 9 6 3.9038 -0.7636 2.7191 10 6 5.3880 -1.0174 2.7811 11 6 5.8625 -2.2899 3.0048 12 6 7.2272 -2.5261 3.0628 13 6 8.1290 -1.4864 2.8957 14 6 7.6773 -0.2072 2.6653 15 6 6.2939 0.0456 2.6111 16 6 5.8181 1.3570 2.3808 17 1 4.8580 1.6595 2.7719 18 6 6.5913 2.2629 1.6459 19 7 6.3126 3.5406 1.6822 20 14 8.0213 1.6478 0.6134 21 1 9.2768 1.7411 1.4009 22 1 7.7820 0.2334 0.2291 23 1 8.1418 2.4797 -0.6108 24 6 2.0061 -0.6675 1.2064 25 1 -0.3633 0.5300 0.8805 26 1 -0.3634 0.4975 -0.8991 27 1 -0.3634 -1.0275 0.0188 28 1 1.7184 1.8622 -0.7731 29 1 1.9505 -1.7870 -1.1550 30 1 1.4359 -0.3892 -2.1316 31 1 3.6642 -0.2982 -2.5753 32 1 3.6521 0.6536 -1.0808 33 1 4.5452 -2.2104 -1.4979 34 1 5.4413 -0.8579 -0.7812 35 1 4.8660 -2.1983 1.0751 36 1 3.2440 -2.5427 0.4458 37 1 3.3747 -1.5811 3.2086 38 1 3.6740 0.1734 3.2264 39 1 5.1690 -3.1074 3.1355 40 1 7.5906 -3.5277 3.2392 41 1 9.1902 -1.6819 2.9425 42 1 8.3816 0.6005 2.5314 43 1 6.8488 4.1685 1.1731 44 1 1.6477 -1.6969 1.2030 45 1 1.5932 -0.1553 2.0754 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235512699.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:14 Heat of formation + Delta-G solvation = -22.836463 kcal Electronic energy + Delta-G solvation = -24916.545507 eV Core-core repulsion = 21705.543856 eV Total energy + Delta-G solvation = -3211.001651 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.73541 -38.03381 -35.80958 -33.48098 -33.42890 -31.92821 -30.48247 -30.11134 -27.80917 -26.26150 -24.83377 -24.53477 -22.57573 -21.32885 -19.89414 -19.80740 -18.71975 -17.21448 -16.44494 -15.71764 -15.64907 -15.13324 -14.59279 -14.31630 -14.15856 -13.78273 -13.63579 -13.38401 -13.02113 -12.62871 -12.49915 -12.22929 -12.11761 -11.87217 -11.63223 -11.46423 -11.40828 -11.19541 -11.10024 -10.70284 -10.63480 -10.45589 -10.29789 -10.07727 -10.04723 -9.70100 -9.59279 -9.44553 -9.29295 -9.01077 -7.54578 -7.50132 -7.40561 -6.80352 -4.29159 2.62302 2.74492 3.19737 3.30391 3.41847 4.09130 4.38673 4.57565 4.71533 4.96102 5.13786 5.36916 5.40376 5.53654 5.59449 5.63698 5.75267 5.76998 5.81794 5.88433 5.92964 6.05462 6.08138 6.10287 6.12602 6.18740 6.25983 6.32642 6.43548 6.48296 6.60851 6.71522 6.73698 6.77347 6.87913 7.03399 7.05180 7.28527 7.49400 7.67416 7.76376 7.87173 7.97391 8.04090 8.15007 8.24255 8.54089 8.79670 8.95284 10.21639 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015502 B = 0.007372 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.739430 B = 3797.424924 C = 4543.749157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.139 3.861 3 O -0.527 6.527 4 C -0.136 4.136 5 C -0.118 4.118 6 C -0.102 4.102 7 C 0.046 3.954 8 N -0.492 5.492 9 C 0.126 3.874 10 C -0.184 4.184 11 C -0.075 4.075 12 C -0.255 4.255 13 C -0.075 4.075 14 C -0.244 4.244 15 C 0.108 3.892 16 C -0.406 4.406 17 H 0.095 0.905 18 C 0.087 3.913 19 N -0.806 5.806 20 Si 0.912 3.088 21 H -0.277 1.277 22 H -0.243 1.243 23 H -0.296 1.296 24 C 0.066 3.934 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.361 0.639 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.041 0.959 32 H 0.092 0.908 33 H 0.043 0.957 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.018 0.982 37 H 0.013 0.987 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.282 0.718 44 H 0.039 0.961 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.108 -6.768 -5.372 11.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.098 3.902 3 O -0.331 6.331 4 C -0.174 4.174 5 C -0.155 4.155 6 C -0.141 4.141 7 C -0.083 4.083 8 N -0.215 5.215 9 C 0.000 4.000 10 C -0.186 4.186 11 C -0.094 4.094 12 C -0.274 4.274 13 C -0.093 4.093 14 C -0.263 4.263 15 C 0.104 3.896 16 C -0.434 4.434 17 H 0.113 0.887 18 C -0.132 4.132 19 N -0.430 5.430 20 Si 0.741 3.259 21 H -0.204 1.204 22 H -0.166 1.166 23 H -0.224 1.224 24 C -0.062 4.062 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.206 0.794 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.110 0.890 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.036 0.964 37 H 0.031 0.969 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.114 0.886 43 H 0.092 0.908 44 H 0.056 0.944 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.670 -6.210 -5.039 11.080 hybrid contribution 0.113 -0.778 -0.789 1.114 sum -7.557 -6.988 -5.827 11.828 Atomic orbital electron populations 1.22571 0.96666 1.02118 1.02330 1.20043 0.91025 0.83904 0.95264 1.86919 1.77422 1.21805 1.46909 1.21985 0.97697 1.00676 0.97063 1.21169 0.93144 1.02765 0.98424 1.21832 0.99544 0.97631 0.95054 1.22068 0.99950 0.91333 0.94966 1.61449 1.05624 1.43932 1.10451 1.20751 0.92445 0.99253 0.87561 1.19370 0.93461 0.92660 1.13119 1.20469 0.94728 0.95155 0.99054 1.20248 0.93141 0.97223 1.16807 1.20553 0.97165 0.93396 0.98232 1.20989 0.95740 0.95965 1.13651 1.17489 0.90384 0.92797 0.88948 1.19446 1.04542 0.92644 1.26789 0.88735 1.26105 0.97237 0.94024 0.95840 1.69685 1.37027 1.02740 1.33570 0.86350 0.80305 0.80838 0.78457 1.20387 1.16640 1.22439 1.20914 0.90140 0.97770 0.97384 0.91902 0.92430 0.92176 0.79428 0.91976 0.92567 0.94046 0.88972 0.93783 0.91842 0.89645 0.96376 0.96937 0.90497 0.89409 0.89307 0.89285 0.88553 0.90760 0.94351 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.98 8.63 37.16 0.32 -1.66 16 2 C 0.14 1.97 0.90 -93.21 -0.08 1.89 16 3 O -0.53 -8.72 10.93 -35.23 -0.39 -9.11 16 4 C -0.14 -1.82 4.77 -27.21 -0.13 -1.95 16 5 C -0.12 -1.87 5.36 -27.33 -0.15 -2.02 16 6 C -0.10 -1.79 6.14 -25.50 -0.16 -1.95 16 7 C 0.05 0.83 4.87 -4.67 -0.02 0.80 16 8 N -0.49 -9.41 4.23 -241.00 -1.02 -10.43 16 9 C 0.13 2.56 4.61 -4.97 -0.02 2.54 16 10 C -0.18 -4.15 4.17 -103.91 -0.43 -4.58 16 11 C -0.08 -1.57 7.86 -39.66 -0.31 -1.88 16 12 C -0.25 -5.35 10.05 -39.29 -0.39 -5.75 16 13 C -0.07 -1.66 10.02 -39.66 -0.40 -2.06 16 14 C -0.24 -5.98 7.04 -38.87 -0.27 -6.26 16 15 C 0.11 2.70 5.17 -106.83 -0.55 2.15 16 16 C -0.41 -10.90 8.97 -37.74 -0.34 -11.24 16 17 H 0.09 2.71 6.70 -52.49 -0.35 2.36 16 18 C 0.09 2.30 5.45 -17.34 -0.09 2.21 16 19 N -0.81 -21.83 13.93 55.55 0.77 -21.05 16 20 Si 0.91 21.62 24.40 -169.99 -4.15 17.47 16 21 H -0.28 -6.42 6.68 56.52 0.38 -6.04 16 22 H -0.24 -5.91 6.68 56.52 0.38 -5.53 16 23 H -0.30 -6.85 7.11 56.52 0.40 -6.44 16 24 C 0.07 1.06 3.73 -6.70 -0.02 1.03 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.55 8.11 -51.93 -0.42 0.13 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.36 4.55 9.02 45.56 0.41 4.97 16 29 H 0.06 0.82 7.15 -51.93 -0.37 0.44 16 30 H 0.06 0.64 8.00 -51.93 -0.42 0.23 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 1.74 6.24 -51.93 -0.32 1.41 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.09 1.70 4.41 -51.93 -0.23 1.47 16 36 H 0.02 0.30 6.51 -51.93 -0.34 -0.04 16 37 H 0.01 0.23 7.94 -51.93 -0.41 -0.18 16 38 H 0.08 1.69 6.75 -51.93 -0.35 1.34 16 39 H 0.09 1.62 8.03 -52.49 -0.42 1.20 16 40 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 41 H 0.09 1.75 8.06 -52.48 -0.42 1.32 16 42 H 0.10 2.38 4.30 -52.48 -0.23 2.16 16 43 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 44 H 0.04 0.56 7.24 -51.93 -0.38 0.18 16 45 H 0.07 1.13 7.78 -51.93 -0.40 0.73 16 LS Contribution 335.04 15.07 5.05 5.05 Total: -1.00 -28.28 335.04 -9.17 -37.45 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -6.37 Total: 9.35 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: -3.06 Total: -28.73 kcal Atomic # 7 Polarization: -31.23 SS G_CDS: -0.25 Total: -31.48 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -0.39 Total: -9.11 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.15 Total: 17.47 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.28 -9.17 -37.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235512699.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.612 kcal (2) G-P(sol) polarization free energy of solvation -28.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds