Wall clock time and date at job start Tue Mar 31 2020 05:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42895 * 108.98956 * 2 1 4 4 C 1.54507 * 109.05566 * 241.03972 * 2 1 3 5 5 C 1.50452 * 108.85466 * 162.26541 * 4 2 1 6 6 C 1.54293 * 113.03462 * 92.15454 * 5 4 2 7 7 C 1.54060 * 112.28866 * 318.30351 * 6 5 4 8 8 N 1.44277 * 111.98545 * 318.91585 * 7 6 5 9 9 C 1.46899 * 111.00054 * 219.30981 * 8 7 6 10 10 C 1.50704 * 109.47164 * 48.01516 * 9 8 7 11 11 C 1.37637 * 120.12486 * 259.97723 * 10 9 8 12 12 C 1.38620 * 120.24407 * 180.02562 * 11 10 9 13 13 C 1.38647 * 120.50163 * 359.94960 * 12 11 10 14 14 C 1.37598 * 120.25035 * 359.76972 * 13 12 11 15 15 C 1.40694 * 120.12579 * 80.00030 * 10 9 8 16 16 C 1.41394 * 120.24872 * 359.97438 * 15 10 9 17 17 H 1.07998 * 119.99602 * 28.67238 * 16 15 10 18 18 C 1.39943 * 120.00206 * 208.67164 * 16 15 10 19 19 N 1.30826 * 119.99753 * 195.42091 * 18 16 15 20 20 Si 1.86798 * 120.00301 * 15.42020 * 18 16 15 21 21 H 1.48497 * 109.47431 * 265.60093 * 20 18 16 22 22 H 1.48506 * 109.46845 * 25.59859 * 20 18 16 23 23 H 1.48498 * 109.47594 * 145.59609 * 20 18 16 24 24 C 1.45865 * 109.05326 * 118.95525 * 2 1 3 25 25 H 1.09001 * 109.46972 * 301.04651 * 1 2 3 26 26 H 1.08997 * 109.47538 * 61.04194 * 1 2 3 27 27 H 1.09004 * 109.47698 * 181.04600 * 1 2 3 28 28 H 0.96709 * 113.99436 * 298.95698 * 3 2 1 29 29 H 1.09007 * 109.57676 * 282.07905 * 4 2 1 30 30 H 1.09002 * 109.57530 * 42.32637 * 4 2 1 31 31 H 1.09001 * 108.77041 * 213.07107 * 5 4 2 32 32 H 1.08999 * 108.77190 * 331.35775 * 5 4 2 33 33 H 1.09005 * 108.91964 * 79.02793 * 6 5 4 34 34 H 1.09004 * 108.92132 * 197.67186 * 6 5 4 35 35 H 1.09004 * 108.98092 * 198.26703 * 7 6 5 36 36 H 1.09002 * 108.98201 * 79.55966 * 7 6 5 37 37 H 1.08992 * 109.47245 * 288.01435 * 9 8 7 38 38 H 1.08997 * 109.46931 * 168.01223 * 9 8 7 39 39 H 1.07997 * 119.88126 * 0.02562 * 11 10 9 40 40 H 1.07998 * 119.74599 * 179.97438 * 12 11 10 41 41 H 1.08009 * 119.87439 * 180.02562 * 13 12 11 42 42 H 1.08003 * 120.13023 * 180.25202 * 14 13 12 43 43 H 0.97005 * 119.99496 * 179.97438 * 19 18 16 44 44 H 1.09004 * 108.79698 * 60.98252 * 24 2 1 45 45 H 1.08996 * 108.70509 * 302.69055 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 1.9949 1.3512 0.0000 4 6 2.0344 -0.7071 -1.2778 5 6 3.4750 -0.3358 -1.5025 6 6 4.4625 -1.3313 -0.8587 7 6 4.0119 -1.7756 0.5459 8 7 3.4801 -0.6770 1.3152 9 6 3.9038 -0.7636 2.7191 10 6 5.3880 -1.0174 2.7811 11 6 5.8625 -2.2899 3.0048 12 6 7.2272 -2.5261 3.0628 13 6 8.1290 -1.4864 2.8957 14 6 7.6773 -0.2072 2.6653 15 6 6.2939 0.0456 2.6111 16 6 5.8181 1.3570 2.3808 17 1 4.8580 1.6595 2.7719 18 6 6.5913 2.2629 1.6459 19 7 6.3126 3.5406 1.6822 20 14 8.0213 1.6478 0.6134 21 1 9.2768 1.7411 1.4009 22 1 7.7820 0.2334 0.2291 23 1 8.1418 2.4797 -0.6108 24 6 2.0061 -0.6675 1.2064 25 1 -0.3633 0.5300 0.8805 26 1 -0.3634 0.4975 -0.8991 27 1 -0.3634 -1.0275 0.0188 28 1 1.7184 1.8622 -0.7731 29 1 1.9505 -1.7870 -1.1550 30 1 1.4359 -0.3892 -2.1316 31 1 3.6642 -0.2982 -2.5753 32 1 3.6521 0.6536 -1.0808 33 1 4.5452 -2.2104 -1.4979 34 1 5.4413 -0.8579 -0.7812 35 1 4.8660 -2.1983 1.0751 36 1 3.2440 -2.5427 0.4458 37 1 3.3747 -1.5811 3.2086 38 1 3.6740 0.1734 3.2264 39 1 5.1690 -3.1074 3.1355 40 1 7.5906 -3.5277 3.2392 41 1 9.1902 -1.6819 2.9425 42 1 8.3816 0.6005 2.5314 43 1 6.8488 4.1685 1.1731 44 1 1.6477 -1.6969 1.2030 45 1 1.5932 -0.1553 2.0754 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235512699.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:13 Heat of formation + Delta-G solvation = -41.597591 kcal Electronic energy + Delta-G solvation = -24917.359051 eV Core-core repulsion = 21705.543856 eV Total energy + Delta-G solvation = -3211.815194 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.06023 -39.68545 -37.23340 -35.41321 -34.77497 -33.15967 -32.28116 -31.78714 -29.02036 -27.76891 -26.56478 -25.88917 -23.98546 -23.17243 -21.44554 -21.07857 -20.19782 -19.14080 -17.75924 -17.38863 -17.01939 -16.55132 -16.14763 -15.91047 -15.69612 -15.45866 -14.94436 -14.85664 -14.50762 -14.28312 -13.92152 -13.68659 -13.46013 -13.23860 -13.18808 -12.93510 -12.77672 -12.63614 -12.57481 -12.51013 -12.26727 -12.03145 -11.69816 -11.50977 -11.46722 -11.38057 -11.13838 -11.00932 -10.90032 -10.56319 -9.36116 -9.28946 -8.83871 -8.78175 -6.30138 0.81995 0.90442 1.25157 1.40174 1.48415 2.14985 2.71894 3.11015 3.46972 3.71065 3.91351 3.99162 4.16772 4.22542 4.26082 4.28645 4.37396 4.45439 4.47730 4.53962 4.57165 4.66893 4.76002 4.80761 4.86162 4.89518 4.97349 4.98802 5.03631 5.04313 5.13939 5.21242 5.25635 5.39104 5.42983 5.45479 5.49976 5.69708 5.74206 5.89868 5.98513 6.09235 6.37241 6.45017 6.54226 6.58745 6.89311 6.96959 7.12373 8.30167 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015502 B = 0.007372 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.739430 B = 3797.424924 C = 4543.749157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.132 3.868 3 O -0.562 6.562 4 C -0.127 4.127 5 C -0.113 4.113 6 C -0.104 4.104 7 C 0.048 3.952 8 N -0.515 5.515 9 C 0.132 3.868 10 C -0.182 4.182 11 C -0.077 4.077 12 C -0.234 4.234 13 C -0.085 4.085 14 C -0.263 4.263 15 C 0.087 3.913 16 C -0.431 4.431 17 H 0.057 0.943 18 C 0.050 3.950 19 N -0.852 5.852 20 Si 0.962 3.038 21 H -0.268 1.268 22 H -0.255 1.255 23 H -0.289 1.289 24 C 0.063 3.937 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.374 0.626 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.022 0.978 35 H 0.067 0.933 36 H 0.045 0.955 37 H 0.037 0.963 38 H 0.045 0.955 39 H 0.122 0.878 40 H 0.127 0.873 41 H 0.119 0.881 42 H 0.088 0.912 43 H 0.287 0.713 44 H 0.063 0.937 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.761 -10.458 -6.375 15.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.092 3.908 3 O -0.367 6.367 4 C -0.165 4.165 5 C -0.151 4.151 6 C -0.142 4.142 7 C -0.080 4.080 8 N -0.238 5.238 9 C 0.006 3.994 10 C -0.184 4.184 11 C -0.096 4.096 12 C -0.253 4.253 13 C -0.103 4.103 14 C -0.282 4.282 15 C 0.084 3.916 16 C -0.460 4.460 17 H 0.075 0.925 18 C -0.163 4.163 19 N -0.479 5.479 20 Si 0.789 3.211 21 H -0.194 1.194 22 H -0.179 1.179 23 H -0.217 1.217 24 C -0.064 4.064 25 H 0.073 0.927 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.221 0.779 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.041 0.959 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.140 0.860 40 H 0.144 0.856 41 H 0.137 0.863 42 H 0.106 0.894 43 H 0.097 0.903 44 H 0.081 0.919 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.327 -9.906 -6.043 14.282 hybrid contribution 0.293 0.114 -0.380 0.493 sum -8.034 -9.792 -6.423 14.201 Atomic orbital electron populations 1.22457 0.93874 1.03430 1.02894 1.20207 0.93038 0.82731 0.94869 1.86893 1.78330 1.23409 1.48107 1.21921 0.95834 1.01203 0.97494 1.21096 0.94809 1.00346 0.98828 1.21853 0.97932 0.98706 0.95706 1.22034 0.99901 0.91444 0.94636 1.61343 1.07894 1.45049 1.09523 1.20585 0.91605 0.98466 0.88787 1.19711 0.94314 0.92931 1.11425 1.20836 0.95677 0.95167 0.97899 1.20785 0.92930 0.98554 1.12994 1.20927 0.99224 0.92581 0.97609 1.21105 0.95276 0.97182 1.14642 1.17681 0.91510 0.92822 0.89571 1.19246 1.03529 0.94245 1.29019 0.92533 1.26638 0.99109 0.94060 0.96502 1.69726 1.38971 1.03502 1.35745 0.85572 0.78456 0.79525 0.77535 1.19419 1.17870 1.21706 1.21073 0.88091 0.99224 0.98036 0.92734 0.90640 0.90328 0.77934 0.90745 0.89903 0.92531 0.92667 0.91161 0.95869 0.91475 0.93685 0.94546 0.93656 0.86012 0.85555 0.86337 0.89449 0.90297 0.91932 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.28 8.63 71.98 0.62 -2.66 16 2 C 0.13 3.55 0.90 -12.47 -0.01 3.54 16 3 O -0.56 -19.03 10.93 -148.98 -1.63 -20.66 16 4 C -0.13 -3.02 4.77 30.28 0.14 -2.88 16 5 C -0.11 -3.49 5.36 30.21 0.16 -3.33 16 6 C -0.10 -3.53 6.14 31.39 0.19 -3.34 16 7 C 0.05 1.67 4.87 87.15 0.42 2.10 16 8 N -0.52 -19.68 4.23 -916.40 -3.88 -23.56 16 9 C 0.13 5.43 4.61 85.56 0.39 5.83 16 10 C -0.18 -8.15 4.17 -19.41 -0.08 -8.23 16 11 C -0.08 -2.98 7.86 22.22 0.17 -2.81 16 12 C -0.23 -8.86 10.05 22.46 0.23 -8.63 16 13 C -0.09 -3.56 10.02 22.22 0.22 -3.33 16 14 C -0.26 -12.86 7.04 22.73 0.16 -12.70 16 15 C 0.09 4.50 5.17 -21.29 -0.11 4.39 16 16 C -0.43 -24.70 8.97 23.46 0.21 -24.49 16 17 H 0.06 3.57 6.70 -2.91 -0.02 3.55 16 18 C 0.05 2.83 5.45 85.26 0.46 3.29 16 19 N -0.85 -49.26 13.93 21.83 0.30 -48.95 16 20 Si 0.96 46.43 24.40 68.60 1.67 48.11 16 21 H -0.27 -12.33 6.68 99.48 0.66 -11.66 16 22 H -0.25 -12.56 6.68 99.48 0.66 -11.90 16 23 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 24 C 0.06 1.95 3.73 83.94 0.31 2.27 16 25 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.07 1.21 8.11 -2.39 -0.02 1.19 16 27 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 28 H 0.37 9.63 9.02 -74.05 -0.67 8.97 16 29 H 0.07 1.62 7.15 -2.38 -0.02 1.61 16 30 H 0.08 1.56 8.00 -2.39 -0.02 1.54 16 31 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.05 2.14 6.24 -2.39 -0.01 2.13 16 33 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.07 2.54 4.41 -2.38 -0.01 2.53 16 36 H 0.05 1.30 6.51 -2.39 -0.02 1.29 16 37 H 0.04 1.29 7.94 -2.39 -0.02 1.27 16 38 H 0.05 2.13 6.75 -2.39 -0.02 2.11 16 39 H 0.12 3.92 8.03 -2.91 -0.02 3.90 16 40 H 0.13 3.92 8.06 -2.91 -0.02 3.90 16 41 H 0.12 4.22 8.06 -2.91 -0.02 4.19 16 42 H 0.09 4.38 4.30 -2.91 -0.01 4.37 16 43 H 0.29 15.13 8.30 -92.70 -0.77 14.36 16 44 H 0.06 1.61 7.24 -2.39 -0.02 1.60 16 45 H 0.06 1.84 7.78 -2.39 -0.02 1.82 16 Total: -1.00 -65.43 335.04 0.21 -65.22 By element: Atomic # 1 Polarization: 30.61 SS G_CDS: 0.23 Total: 30.84 kcal Atomic # 6 Polarization: -54.51 SS G_CDS: 3.51 Total: -51.00 kcal Atomic # 7 Polarization: -68.94 SS G_CDS: -3.57 Total: -72.51 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -1.63 Total: -20.66 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.67 Total: 48.11 kcal Total: -65.43 0.21 -65.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235512699.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.623 kcal (2) G-P(sol) polarization free energy of solvation -65.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds