Wall clock time and date at job start Tue Mar 31 2020 05:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.54290 * 2 1 4 4 C 1.50753 * 109.62104 * 120.22148 * 2 1 3 5 5 C 1.54171 * 112.61340 * 212.92796 * 4 2 1 6 6 C 1.53819 * 111.96979 * 318.49152 * 5 4 2 7 7 C 1.50818 * 111.62584 * 319.04178 * 6 5 4 8 8 N 1.47635 * 108.05199 * 95.05468 * 7 6 5 9 9 C 1.46898 * 110.99600 * 150.34909 * 8 7 6 10 10 C 1.50704 * 109.47012 * 204.24941 * 9 8 7 11 11 C 1.37641 * 120.12300 * 255.10824 * 10 9 8 12 12 C 1.38618 * 120.24446 * 179.97438 * 11 10 9 13 13 C 1.38661 * 120.50167 * 0.02562 * 12 11 10 14 14 C 1.37600 * 120.24767 * 359.97438 * 13 12 11 15 15 C 1.40691 * 120.12934 * 75.36219 * 10 9 8 16 16 C 1.41394 * 120.24601 * 0.02562 * 15 10 9 17 17 H 1.08003 * 120.00052 * 330.88546 * 16 15 10 18 18 C 1.39950 * 120.00182 * 150.88428 * 16 15 10 19 19 N 1.30820 * 119.99869 * 349.51590 * 18 16 15 20 20 Si 1.86803 * 119.99780 * 169.52003 * 18 16 15 21 21 H 1.48492 * 109.47343 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47142 * 120.00141 * 20 18 16 23 23 H 1.48505 * 109.46720 * 239.99495 * 20 18 16 24 24 C 1.39779 * 114.75550 * 277.20069 * 8 7 6 25 25 H 1.09001 * 109.46694 * 180.18221 * 1 2 3 26 26 H 1.08996 * 109.47453 * 300.17633 * 1 2 3 27 27 H 1.09000 * 109.47341 * 60.18851 * 1 2 3 28 28 H 0.96703 * 113.99920 * 59.82049 * 3 2 1 29 29 H 1.08997 * 108.85509 * 333.73949 * 4 2 1 30 30 H 1.09005 * 108.85207 * 92.22756 * 4 2 1 31 31 H 1.08996 * 108.97925 * 79.13558 * 5 4 2 32 32 H 1.09003 * 108.98058 * 197.93163 * 5 4 2 33 33 H 1.09001 * 109.04769 * 79.59375 * 6 5 4 34 34 H 1.08996 * 109.04981 * 198.55784 * 6 5 4 35 35 H 1.09003 * 109.74127 * 335.41786 * 7 6 5 36 36 H 1.08994 * 109.74514 * 214.69655 * 7 6 5 37 37 H 1.08998 * 109.47392 * 84.24847 * 9 8 7 38 38 H 1.09002 * 109.47539 * 324.25002 * 9 8 7 39 39 H 1.07996 * 119.88193 * 0.02562 * 11 10 9 40 40 H 1.08001 * 119.74996 * 180.02562 * 12 11 10 41 41 H 1.07998 * 119.87477 * 180.02562 * 13 12 11 42 42 H 1.07994 * 120.12669 * 179.97438 * 14 13 12 43 43 H 0.97000 * 119.99717 * 179.97438 * 19 18 16 44 44 H 1.09007 * 109.01267 * 182.86753 * 24 8 7 45 45 H 1.08995 * 109.02221 * 301.75762 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0080 1.3467 0.0000 4 6 2.0362 -0.7147 1.2270 5 6 3.3604 -0.1254 1.7523 6 6 4.3324 0.2145 0.6096 7 6 4.3289 -0.8504 -0.4584 8 7 3.3877 -0.4338 -1.5168 9 6 3.8006 -0.9591 -2.8250 10 6 3.2347 -0.0885 -3.9172 11 6 2.1631 -0.5248 -4.6628 12 6 1.6403 0.2741 -5.6677 13 6 2.1891 1.5193 -5.9341 14 6 3.2606 1.9757 -5.2014 15 6 3.8031 1.1709 -4.1823 16 6 4.9078 1.6269 -3.4268 17 1 5.0359 1.2993 -2.4057 18 6 5.8353 2.5029 -4.0022 19 7 5.8012 2.7392 -5.2884 20 14 7.1221 3.3345 -2.9335 21 1 6.9481 2.9034 -1.5232 22 1 8.4780 2.9536 -3.4044 23 1 6.9628 4.8083 -3.0234 24 6 2.0467 -0.7316 -1.2579 25 1 -0.3633 -1.0277 0.0033 26 1 -0.3634 0.5165 0.8883 27 1 -0.3634 0.5109 -0.8917 28 1 1.7210 1.8659 0.7637 29 1 1.2831 -0.6437 2.0118 30 1 2.1922 -1.7657 0.9832 31 1 3.1455 0.7819 2.3166 32 1 3.8333 -0.8507 2.4144 33 1 4.0397 1.1655 0.1646 34 1 5.3399 0.3069 1.0151 35 1 4.0056 -1.7996 -0.0308 36 1 5.3299 -0.9560 -0.8764 37 1 3.4283 -1.9768 -2.9419 38 1 4.8888 -0.9609 -2.8889 39 1 1.7275 -1.4927 -4.4637 40 1 0.7990 -0.0759 -6.2476 41 1 1.7734 2.1336 -6.7192 42 1 3.6868 2.9456 -5.4108 43 1 6.4438 3.3466 -5.6871 44 1 1.4444 -0.4321 -2.1157 45 1 1.9437 -1.8066 -1.1099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235512700.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:17 Heat of formation + Delta-G solvation = -26.238077 kcal Electronic energy + Delta-G solvation = -24715.045651 eV Core-core repulsion = 21503.896495 eV Total energy + Delta-G solvation = -3211.149156 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.76607 -37.59150 -35.75045 -33.59470 -33.38891 -31.92435 -30.26407 -29.27742 -27.67494 -26.18458 -25.09620 -24.35849 -22.56494 -20.80806 -19.94626 -19.36909 -19.27689 -16.98279 -16.22661 -15.72112 -15.44795 -14.95297 -14.64805 -14.52292 -13.91152 -13.72170 -13.48108 -13.31590 -12.96685 -12.51892 -12.44841 -12.38248 -11.94525 -11.59100 -11.48278 -11.33995 -11.13958 -11.06201 -10.96330 -10.82256 -10.66148 -10.49182 -10.41699 -10.18322 -10.16471 -9.85270 -9.37753 -9.28284 -9.12240 -9.06278 -7.34929 -7.19746 -7.10008 -6.54064 -4.15851 2.89849 3.09309 3.18427 3.25538 3.36202 4.09149 4.45249 4.68410 4.85467 4.90152 5.04691 5.08056 5.33883 5.41954 5.58136 5.68479 5.74603 5.85054 5.91785 5.94481 5.99631 6.02083 6.04305 6.16002 6.21083 6.28908 6.34740 6.39595 6.44242 6.53638 6.58470 6.61433 6.66673 6.96629 7.13553 7.28769 7.42756 7.54673 7.79199 7.94949 7.97565 8.09748 8.22436 8.29661 8.33988 8.49770 8.87278 9.12885 9.19198 10.40619 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013625 B = 0.007352 C = 0.005481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.618817 B = 3807.727348 C = 5107.307531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.134 3.866 3 O -0.521 6.521 4 C -0.148 4.148 5 C -0.102 4.102 6 C -0.124 4.124 7 C 0.070 3.930 8 N -0.525 5.525 9 C 0.130 3.870 10 C -0.185 4.185 11 C -0.093 4.093 12 C -0.243 4.243 13 C -0.111 4.111 14 C -0.158 4.158 15 C 0.134 3.866 16 C -0.439 4.439 17 H 0.093 0.907 18 C 0.069 3.931 19 N -0.809 5.809 20 Si 0.904 3.096 21 H -0.259 1.259 22 H -0.279 1.279 23 H -0.276 1.276 24 C 0.100 3.900 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.356 0.644 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.107 0.893 34 H 0.047 0.953 35 H 0.024 0.976 36 H 0.068 0.932 37 H 0.013 0.987 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.117 0.883 43 H 0.275 0.725 44 H 0.081 0.919 45 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.767 -4.818 11.515 13.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.092 3.908 3 O -0.324 6.324 4 C -0.186 4.186 5 C -0.140 4.140 6 C -0.162 4.162 7 C -0.056 4.056 8 N -0.248 5.248 9 C 0.005 3.995 10 C -0.187 4.187 11 C -0.112 4.112 12 C -0.262 4.262 13 C -0.129 4.129 14 C -0.177 4.177 15 C 0.131 3.869 16 C -0.469 4.469 17 H 0.111 0.889 18 C -0.146 4.146 19 N -0.436 5.436 20 Si 0.729 3.271 21 H -0.183 1.183 22 H -0.205 1.205 23 H -0.202 1.202 24 C -0.030 4.030 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.201 0.799 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.126 0.874 34 H 0.066 0.934 35 H 0.042 0.958 36 H 0.087 0.913 37 H 0.031 0.969 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.135 0.865 43 H 0.085 0.915 44 H 0.099 0.901 45 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -4.317 -4.439 10.781 12.432 hybrid contribution 0.142 -0.332 0.898 0.968 sum -4.175 -4.771 11.679 13.288 Atomic orbital electron populations 1.22488 0.96234 1.02079 1.02410 1.21067 0.91406 0.83750 0.94562 1.86914 1.75236 1.22019 1.48198 1.22192 0.97636 1.00765 0.97957 1.21700 0.94822 0.99586 0.97897 1.21564 0.97116 1.02732 0.94803 1.21763 0.96149 0.95377 0.92355 1.58458 1.00959 1.63458 1.01931 1.20656 0.99674 0.92805 0.86372 1.19543 1.01562 0.96678 1.00951 1.20355 0.96594 0.97301 0.96918 1.20275 1.04312 0.97720 1.03932 1.20665 0.97486 0.95742 0.99036 1.21394 0.96265 1.00598 0.99444 1.17355 0.90582 0.88759 0.90176 1.19792 1.05161 1.21779 1.00189 0.88920 1.25955 0.98630 0.95228 0.94794 1.69828 1.33181 1.29571 1.10998 0.86331 0.79880 0.79363 0.81527 1.18252 1.20488 1.20170 1.20826 0.91215 0.94233 0.96757 0.92212 0.92688 0.91431 0.79926 0.92635 0.92008 0.92772 0.93393 0.87441 0.93449 0.95811 0.91318 0.96920 0.90880 0.90187 0.90038 0.89903 0.86542 0.91453 0.90098 0.97096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 8.52 37.15 0.32 -1.79 16 2 C 0.13 1.89 0.98 -91.00 -0.09 1.80 16 3 O -0.52 -8.22 9.32 -35.23 -0.33 -8.55 16 4 C -0.15 -1.79 4.80 -27.25 -0.13 -1.92 16 5 C -0.10 -1.26 5.40 -25.69 -0.14 -1.40 16 6 C -0.12 -1.89 5.37 -27.40 -0.15 -2.04 16 7 C 0.07 1.15 5.37 -4.51 -0.02 1.12 16 8 N -0.53 -9.83 2.91 -241.45 -0.70 -10.53 16 9 C 0.13 2.69 4.37 -4.98 -0.02 2.67 16 10 C -0.19 -4.43 4.80 -103.91 -0.50 -4.92 16 11 C -0.09 -2.12 8.91 -39.66 -0.35 -2.47 16 12 C -0.24 -5.64 10.05 -39.28 -0.39 -6.03 16 13 C -0.11 -2.71 10.02 -39.66 -0.40 -3.11 16 14 C -0.16 -4.22 8.66 -38.87 -0.34 -4.56 16 15 C 0.13 3.57 5.54 -106.83 -0.59 2.97 16 16 C -0.44 -11.55 8.16 -37.74 -0.31 -11.86 16 17 H 0.09 2.40 6.74 -52.48 -0.35 2.05 16 18 C 0.07 1.76 5.26 -17.34 -0.09 1.67 16 19 N -0.81 -21.44 10.87 55.55 0.60 -20.83 16 20 Si 0.90 19.39 29.57 -169.99 -5.03 14.36 16 21 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 22 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 24 C 0.10 1.70 3.97 -6.75 -0.03 1.68 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.56 8.10 -51.93 -0.42 0.14 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.36 4.19 8.91 45.56 0.41 4.59 16 29 H 0.05 0.58 7.69 -51.93 -0.40 0.18 16 30 H 0.06 0.77 6.57 -51.93 -0.34 0.43 16 31 H 0.05 0.61 8.06 -51.93 -0.42 0.19 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.11 1.95 5.87 -51.93 -0.30 1.64 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.02 0.36 6.66 -51.93 -0.35 0.01 16 36 H 0.07 1.14 7.39 -51.93 -0.38 0.76 16 37 H 0.01 0.24 7.79 -51.93 -0.40 -0.16 16 38 H 0.07 1.56 6.93 -51.93 -0.36 1.20 16 39 H 0.08 1.63 8.00 -52.49 -0.42 1.21 16 40 H 0.08 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.08 1.84 8.06 -52.49 -0.42 1.41 16 42 H 0.12 3.25 6.26 -52.49 -0.33 2.92 16 43 H 0.27 6.70 8.30 -40.82 -0.34 6.36 16 44 H 0.08 1.57 6.51 -51.92 -0.34 1.23 16 45 H 0.01 0.18 7.54 -51.93 -0.39 -0.21 16 LS Contribution 340.14 15.07 5.13 5.13 Total: -1.00 -28.35 340.14 -10.04 -38.39 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -6.47 Total: 10.23 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: -3.23 Total: -28.19 kcal Atomic # 7 Polarization: -31.27 SS G_CDS: -0.10 Total: -31.37 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: -0.33 Total: -8.55 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.03 Total: 14.36 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.35 -10.04 -38.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235512700.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.147 kcal (2) G-P(sol) polarization free energy of solvation -28.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds