Wall clock time and date at job start Tue Mar 31 2020 05:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.54290 * 2 1 4 4 C 1.50753 * 109.62104 * 120.22148 * 2 1 3 5 5 C 1.54171 * 112.61340 * 212.92796 * 4 2 1 6 6 C 1.53819 * 111.96979 * 318.49152 * 5 4 2 7 7 C 1.50818 * 111.62584 * 319.04178 * 6 5 4 8 8 N 1.47635 * 108.05199 * 95.05468 * 7 6 5 9 9 C 1.46898 * 110.99600 * 150.34909 * 8 7 6 10 10 C 1.50704 * 109.47012 * 204.24941 * 9 8 7 11 11 C 1.37641 * 120.12300 * 255.10824 * 10 9 8 12 12 C 1.38618 * 120.24446 * 179.97438 * 11 10 9 13 13 C 1.38661 * 120.50167 * 0.02562 * 12 11 10 14 14 C 1.37600 * 120.24767 * 359.97438 * 13 12 11 15 15 C 1.40691 * 120.12934 * 75.36219 * 10 9 8 16 16 C 1.41394 * 120.24601 * 0.02562 * 15 10 9 17 17 H 1.08003 * 120.00052 * 330.88546 * 16 15 10 18 18 C 1.39950 * 120.00182 * 150.88428 * 16 15 10 19 19 N 1.30820 * 119.99869 * 349.51590 * 18 16 15 20 20 Si 1.86803 * 119.99780 * 169.52003 * 18 16 15 21 21 H 1.48492 * 109.47343 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47142 * 120.00141 * 20 18 16 23 23 H 1.48505 * 109.46720 * 239.99495 * 20 18 16 24 24 C 1.39779 * 114.75550 * 277.20069 * 8 7 6 25 25 H 1.09001 * 109.46694 * 180.18221 * 1 2 3 26 26 H 1.08996 * 109.47453 * 300.17633 * 1 2 3 27 27 H 1.09000 * 109.47341 * 60.18851 * 1 2 3 28 28 H 0.96703 * 113.99920 * 59.82049 * 3 2 1 29 29 H 1.08997 * 108.85509 * 333.73949 * 4 2 1 30 30 H 1.09005 * 108.85207 * 92.22756 * 4 2 1 31 31 H 1.08996 * 108.97925 * 79.13558 * 5 4 2 32 32 H 1.09003 * 108.98058 * 197.93163 * 5 4 2 33 33 H 1.09001 * 109.04769 * 79.59375 * 6 5 4 34 34 H 1.08996 * 109.04981 * 198.55784 * 6 5 4 35 35 H 1.09003 * 109.74127 * 335.41786 * 7 6 5 36 36 H 1.08994 * 109.74514 * 214.69655 * 7 6 5 37 37 H 1.08998 * 109.47392 * 84.24847 * 9 8 7 38 38 H 1.09002 * 109.47539 * 324.25002 * 9 8 7 39 39 H 1.07996 * 119.88193 * 0.02562 * 11 10 9 40 40 H 1.08001 * 119.74996 * 180.02562 * 12 11 10 41 41 H 1.07998 * 119.87477 * 180.02562 * 13 12 11 42 42 H 1.07994 * 120.12669 * 179.97438 * 14 13 12 43 43 H 0.97000 * 119.99717 * 179.97438 * 19 18 16 44 44 H 1.09007 * 109.01267 * 182.86753 * 24 8 7 45 45 H 1.08995 * 109.02221 * 301.75762 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0080 1.3467 0.0000 4 6 2.0362 -0.7147 1.2270 5 6 3.3604 -0.1254 1.7523 6 6 4.3324 0.2145 0.6096 7 6 4.3289 -0.8504 -0.4584 8 7 3.3877 -0.4338 -1.5168 9 6 3.8006 -0.9591 -2.8250 10 6 3.2347 -0.0885 -3.9172 11 6 2.1631 -0.5248 -4.6628 12 6 1.6403 0.2741 -5.6677 13 6 2.1891 1.5193 -5.9341 14 6 3.2606 1.9757 -5.2014 15 6 3.8031 1.1709 -4.1823 16 6 4.9078 1.6269 -3.4268 17 1 5.0359 1.2993 -2.4057 18 6 5.8353 2.5029 -4.0022 19 7 5.8012 2.7392 -5.2884 20 14 7.1221 3.3345 -2.9335 21 1 6.9481 2.9034 -1.5232 22 1 8.4780 2.9536 -3.4044 23 1 6.9628 4.8083 -3.0234 24 6 2.0467 -0.7316 -1.2579 25 1 -0.3633 -1.0277 0.0033 26 1 -0.3634 0.5165 0.8883 27 1 -0.3634 0.5109 -0.8917 28 1 1.7210 1.8659 0.7637 29 1 1.2831 -0.6437 2.0118 30 1 2.1922 -1.7657 0.9832 31 1 3.1455 0.7819 2.3166 32 1 3.8333 -0.8507 2.4144 33 1 4.0397 1.1655 0.1646 34 1 5.3399 0.3069 1.0151 35 1 4.0056 -1.7996 -0.0308 36 1 5.3299 -0.9560 -0.8764 37 1 3.4283 -1.9768 -2.9419 38 1 4.8888 -0.9609 -2.8889 39 1 1.7275 -1.4927 -4.4637 40 1 0.7990 -0.0759 -6.2476 41 1 1.7734 2.1336 -6.7192 42 1 3.6868 2.9456 -5.4108 43 1 6.4438 3.3466 -5.6871 44 1 1.4444 -0.4321 -2.1157 45 1 1.9437 -1.8066 -1.1099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235512700.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:16 Heat of formation + Delta-G solvation = -42.026781 kcal Electronic energy + Delta-G solvation = -24715.730301 eV Core-core repulsion = 21503.896495 eV Total energy + Delta-G solvation = -3211.833806 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.02496 -39.34744 -37.13680 -35.38301 -34.74134 -33.06748 -31.99032 -31.19444 -28.79176 -27.76755 -26.82797 -25.65173 -23.95853 -22.72433 -21.30102 -21.06141 -20.40986 -18.92440 -17.44532 -17.14668 -16.90305 -16.47047 -16.26846 -15.71985 -15.58264 -15.21567 -14.89037 -14.75552 -14.39311 -14.27099 -13.66493 -13.52503 -13.30377 -13.27748 -13.04834 -12.82002 -12.70953 -12.62156 -12.39730 -12.27575 -12.10770 -12.03127 -11.73976 -11.59258 -11.50360 -11.27033 -11.03588 -10.97048 -10.93587 -10.35813 -9.15813 -9.06500 -8.69957 -8.45967 -6.16037 1.05507 1.18900 1.40579 1.55439 1.56171 2.28523 2.87635 3.21159 3.52155 3.84801 3.93283 4.00643 4.05027 4.25191 4.33030 4.36613 4.49175 4.54224 4.55755 4.63806 4.72195 4.74653 4.77409 4.81347 4.86192 4.95118 5.04030 5.07154 5.12302 5.18400 5.28263 5.33738 5.34558 5.46272 5.47177 5.50280 5.62172 5.87794 5.88232 6.11500 6.26396 6.35801 6.49381 6.55907 6.84572 6.89561 7.16280 7.21154 7.22944 8.50515 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013625 B = 0.007352 C = 0.005481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.618817 B = 3807.727348 C = 5107.307531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.134 3.866 3 O -0.549 6.549 4 C -0.141 4.141 5 C -0.097 4.097 6 C -0.122 4.122 7 C 0.072 3.928 8 N -0.539 5.539 9 C 0.137 3.863 10 C -0.186 4.186 11 C -0.098 4.098 12 C -0.241 4.241 13 C -0.120 4.120 14 C -0.189 4.189 15 C 0.104 3.896 16 C -0.459 4.459 17 H 0.089 0.911 18 C 0.026 3.974 19 N -0.843 5.843 20 Si 0.972 3.028 21 H -0.256 1.256 22 H -0.271 1.271 23 H -0.273 1.273 24 C 0.096 3.904 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.045 0.955 28 H 0.372 0.628 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.052 0.948 35 H 0.043 0.957 36 H 0.057 0.943 37 H 0.028 0.972 38 H 0.057 0.943 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.280 0.720 44 H 0.050 0.950 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.567 -6.058 13.771 16.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.093 3.907 3 O -0.355 6.355 4 C -0.179 4.179 5 C -0.134 4.134 6 C -0.160 4.160 7 C -0.055 4.055 8 N -0.262 5.262 9 C 0.010 3.990 10 C -0.188 4.188 11 C -0.117 4.117 12 C -0.261 4.261 13 C -0.138 4.138 14 C -0.209 4.209 15 C 0.101 3.899 16 C -0.490 4.490 17 H 0.107 0.893 18 C -0.185 4.185 19 N -0.471 5.471 20 Si 0.794 3.206 21 H -0.179 1.179 22 H -0.196 1.196 23 H -0.198 1.198 24 C -0.034 4.034 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.064 0.936 28 H 0.219 0.781 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.046 0.954 38 H 0.076 0.924 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.119 0.881 42 H 0.112 0.888 43 H 0.090 0.910 44 H 0.069 0.931 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -5.136 -5.684 13.050 15.132 hybrid contribution 0.295 -0.007 0.139 0.326 sum -4.841 -5.691 13.189 15.158 Atomic orbital electron populations 1.22427 0.94643 1.03015 1.02506 1.21081 0.92503 0.83087 0.94000 1.86881 1.75888 1.23120 1.49580 1.22109 0.98114 1.00154 0.97505 1.21655 0.94255 1.00713 0.96814 1.21489 0.98373 1.00740 0.95385 1.21798 0.95047 0.96665 0.91942 1.58349 1.02193 1.64099 1.01544 1.20516 0.98546 0.92927 0.86969 1.19941 1.01296 0.96113 1.01474 1.20703 0.96158 0.98457 0.96333 1.20657 1.04629 0.96970 1.03813 1.20914 0.96960 0.96746 0.99191 1.21361 0.97922 1.00342 1.01279 1.17704 0.91384 0.90047 0.90763 1.19890 1.05873 1.23125 1.00106 0.89326 1.26726 1.00485 0.95448 0.95855 1.69908 1.34335 1.30406 1.12458 0.85303 0.77418 0.78159 0.79716 1.17939 1.19607 1.19805 1.20896 0.89806 0.95413 0.97297 0.90847 0.90314 0.93603 0.78090 0.89990 0.92002 0.91559 0.91716 0.90523 0.92936 0.93927 0.92440 0.95370 0.92423 0.87323 0.87060 0.88105 0.88751 0.91018 0.93118 0.95795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.67 8.52 71.98 0.61 -3.06 16 2 C 0.13 3.54 0.98 -11.04 -0.01 3.53 16 3 O -0.55 -16.88 9.32 -148.98 -1.39 -18.27 16 4 C -0.14 -2.92 4.80 30.26 0.15 -2.78 16 5 C -0.10 -2.07 5.40 31.27 0.17 -1.91 16 6 C -0.12 -3.55 5.37 30.16 0.16 -3.39 16 7 C 0.07 2.27 5.37 85.45 0.46 2.73 16 8 N -0.54 -20.04 2.91 -917.81 -2.67 -22.71 16 9 C 0.14 5.67 4.37 85.56 0.37 6.04 16 10 C -0.19 -9.02 4.80 -19.41 -0.09 -9.12 16 11 C -0.10 -4.39 8.91 22.22 0.20 -4.20 16 12 C -0.24 -10.98 10.05 22.46 0.23 -10.75 16 13 C -0.12 -5.93 10.02 22.22 0.22 -5.71 16 14 C -0.19 -10.56 8.66 22.73 0.20 -10.37 16 15 C 0.10 5.71 5.54 -21.29 -0.12 5.59 16 16 C -0.46 -25.14 8.16 23.46 0.19 -24.94 16 17 H 0.09 4.77 6.74 -2.91 -0.02 4.75 16 18 C 0.03 1.39 5.26 85.26 0.45 1.84 16 19 N -0.84 -46.44 10.87 21.83 0.24 -46.20 16 20 Si 0.97 40.77 29.57 68.60 2.03 42.80 16 21 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 22 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 23 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 24 C 0.10 3.17 3.97 88.07 0.35 3.52 16 25 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.08 1.34 8.10 -2.39 -0.02 1.32 16 27 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.37 8.21 8.91 -74.06 -0.66 7.55 16 29 H 0.08 1.31 7.69 -2.39 -0.02 1.30 16 30 H 0.06 1.30 6.57 -2.38 -0.02 1.29 16 31 H 0.07 1.27 8.06 -2.39 -0.02 1.25 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 2.76 5.87 -2.39 -0.01 2.75 16 34 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.04 1.18 6.66 -2.39 -0.02 1.16 16 36 H 0.06 1.91 7.39 -2.39 -0.02 1.89 16 37 H 0.03 1.06 7.79 -2.39 -0.02 1.04 16 38 H 0.06 2.53 6.93 -2.39 -0.02 2.51 16 39 H 0.11 4.20 8.00 -2.91 -0.02 4.18 16 40 H 0.11 4.35 8.06 -2.91 -0.02 4.32 16 41 H 0.10 4.49 8.06 -2.91 -0.02 4.46 16 42 H 0.09 5.58 6.26 -2.91 -0.02 5.56 16 43 H 0.28 14.12 8.30 -92.71 -0.77 13.35 16 44 H 0.05 1.96 6.51 -2.38 -0.02 1.94 16 45 H 0.02 0.73 7.54 -2.39 -0.02 0.71 16 Total: -1.00 -63.36 340.14 2.05 -61.31 By element: Atomic # 1 Polarization: 35.71 SS G_CDS: 0.32 Total: 36.02 kcal Atomic # 6 Polarization: -56.48 SS G_CDS: 3.53 Total: -52.95 kcal Atomic # 7 Polarization: -66.48 SS G_CDS: -2.43 Total: -68.92 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -1.39 Total: -18.27 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Total: -63.36 2.05 -61.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235512700.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.279 kcal (2) G-P(sol) polarization free energy of solvation -63.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds