Wall clock time and date at job start Tue Mar 31 2020 05:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42900 * 109.57466 * 2 1 4 4 C 1.54522 * 109.57839 * 239.74887 * 2 1 3 5 5 C 1.45869 * 111.67630 * 162.83392 * 4 2 1 6 6 C 1.53981 * 112.67123 * 61.49371 * 5 4 2 7 7 N 1.44301 * 108.31463 * 278.59600 * 6 5 4 8 8 C 1.46895 * 110.99973 * 221.34408 * 7 6 5 9 9 C 1.50697 * 109.47507 * 283.60591 * 8 7 6 10 10 C 1.37640 * 120.12614 * 90.96198 * 9 8 7 11 11 C 1.38614 * 120.24635 * 179.72398 * 10 9 8 12 12 C 1.38657 * 120.49969 * 0.55752 * 11 10 9 13 13 C 1.37588 * 120.24984 * 359.72346 * 12 11 10 14 14 C 1.40696 * 120.13002 * 271.24330 * 9 8 7 15 15 C 1.41405 * 120.24166 * 359.97078 * 14 9 8 16 16 H 1.07991 * 120.00038 * 324.33467 * 15 14 9 17 17 C 1.39945 * 119.99767 * 144.33289 * 15 14 9 18 18 N 1.30826 * 119.99849 * 326.02141 * 17 15 14 19 19 Si 1.86800 * 120.00002 * 146.01574 * 17 15 14 20 20 H 1.48500 * 109.47081 * 60.00049 * 19 17 15 21 21 H 1.48505 * 109.46955 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47045 * 300.00152 * 19 17 15 23 23 C 1.47938 * 113.64032 * 95.39453 * 7 6 5 24 24 C 1.50545 * 109.67604 * 120.30748 * 2 1 3 25 25 H 1.08995 * 109.47105 * 60.00842 * 1 2 3 26 26 H 1.09002 * 109.46929 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47576 * 300.00025 * 1 2 3 28 28 H 0.96703 * 113.99681 * 299.75456 * 3 2 1 29 29 H 1.08999 * 109.04144 * 283.40414 * 4 2 1 30 30 H 1.09004 * 109.03804 * 42.26449 * 4 2 1 31 31 H 1.08997 * 108.84577 * 182.32017 * 5 4 2 32 32 H 1.09001 * 108.84215 * 300.78174 * 5 4 2 33 33 H 1.08996 * 109.69498 * 38.30727 * 6 5 4 34 34 H 1.09005 * 109.69370 * 158.88817 * 6 5 4 35 35 H 1.08997 * 109.46975 * 43.60906 * 8 7 6 36 36 H 1.08997 * 109.46910 * 163.60643 * 8 7 6 37 37 H 1.07996 * 119.87558 * 359.97438 * 10 9 8 38 38 H 1.07998 * 119.75137 * 180.25838 * 11 10 9 39 39 H 1.08006 * 119.87120 * 179.74637 * 12 11 10 40 40 H 1.08004 * 120.12691 * 180.02562 * 13 12 11 41 41 H 0.97003 * 119.99694 * 180.02562 * 18 17 15 42 42 H 1.08998 * 108.71217 * 79.13375 * 23 7 6 43 43 H 1.08999 * 108.71079 * 197.14040 * 23 7 6 44 44 H 1.08999 * 108.78663 * 332.51924 * 24 2 1 45 45 H 1.09000 * 108.78523 * 90.73387 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0087 1.3464 0.0000 4 6 2.0477 -0.7335 -1.2576 5 6 3.4485 -0.4250 -1.5228 6 6 4.3800 -0.8644 -0.3781 7 7 4.3383 0.1443 0.6530 8 6 5.6794 0.3975 1.1962 9 6 6.0655 -0.7247 2.1249 10 6 6.7418 -1.8210 1.6400 11 6 7.1031 -2.8521 2.4931 12 6 6.7785 -2.7975 3.8400 13 6 6.0977 -1.7139 4.3456 14 6 5.7307 -0.6586 3.4899 15 6 5.0313 0.4603 3.9983 16 1 5.2283 1.4456 3.6026 17 6 4.0839 0.2907 5.0142 18 7 3.3586 -0.7973 5.0573 19 14 3.8550 1.6177 6.3089 20 1 3.4525 2.8868 5.6511 21 1 2.7993 1.1989 7.2657 22 1 5.1317 1.8220 7.0393 23 6 3.3753 -0.1537 1.7357 24 6 2.0368 -0.7154 1.2238 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.7274 1.8639 -0.7670 29 1 1.9418 -1.8084 -1.1113 30 1 1.4484 -0.4323 -2.1169 31 1 3.7533 -0.9312 -2.4387 32 1 3.5513 0.6509 -1.6649 33 1 4.0403 -1.8177 0.0265 34 1 5.3989 -0.9657 -0.7520 35 1 6.3976 0.4557 0.3784 36 1 5.6771 1.3390 1.7454 37 1 6.9955 -1.8762 0.5917 38 1 7.6373 -3.7066 2.1049 39 1 7.0614 -3.6084 4.4949 40 1 5.8462 -1.6733 5.3951 41 1 2.7017 -0.9146 5.7613 42 1 3.8238 -0.8812 2.4122 43 1 3.1799 0.7631 2.2920 44 1 1.2930 -0.6266 2.0156 45 1 2.1674 -1.7707 0.9846 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235512833.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:29 Heat of formation + Delta-G solvation = -27.912716 kcal Electronic energy + Delta-G solvation = -24995.086715 eV Core-core repulsion = 21783.864942 eV Total energy + Delta-G solvation = -3211.221774 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.46300 -37.89354 -35.54498 -33.67095 -32.96684 -31.73997 -30.17221 -29.66699 -28.04446 -25.87044 -25.11647 -23.51468 -22.70505 -20.94687 -20.05248 -19.61700 -18.53551 -17.06520 -15.95296 -15.51744 -15.34142 -15.23367 -14.70635 -14.08012 -13.72627 -13.63411 -13.50739 -13.04614 -12.79520 -12.68111 -12.42009 -12.02525 -11.81821 -11.71955 -11.58623 -11.54965 -11.31707 -10.98474 -10.72830 -10.62927 -10.56265 -10.32648 -10.27196 -10.12304 -9.86927 -9.74511 -9.55551 -9.38554 -9.25746 -8.83923 -7.44433 -7.33138 -6.93188 -6.79302 -4.27284 2.82056 2.92171 3.11389 3.14590 3.26401 3.99953 4.57291 4.70562 4.92648 5.05218 5.19023 5.37422 5.48619 5.58144 5.69172 5.75325 5.92290 6.04796 6.06592 6.15861 6.18844 6.20783 6.26422 6.28466 6.38631 6.42008 6.45535 6.53066 6.67176 6.72118 6.76855 6.83243 6.90256 7.09974 7.15966 7.32915 7.37028 7.60688 7.62572 7.86561 7.96097 8.07225 8.18932 8.26556 8.30923 8.43455 8.61772 8.89611 8.97485 10.15007 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013609 B = 0.007734 C = 0.005671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.982040 B = 3619.357434 C = 4935.975661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.140 3.860 3 O -0.523 6.523 4 C -0.136 4.136 5 C -0.110 4.110 6 C 0.069 3.931 7 N -0.523 5.523 8 C 0.122 3.878 9 C -0.222 4.222 10 C -0.083 4.083 11 C -0.244 4.244 12 C -0.099 4.099 13 C -0.179 4.179 14 C 0.135 3.865 15 C -0.478 4.478 16 H 0.084 0.916 17 C 0.099 3.901 18 N -0.773 5.773 19 Si 0.882 3.118 20 H -0.264 1.264 21 H -0.282 1.282 22 H -0.265 1.265 23 C 0.086 3.914 24 C -0.108 4.108 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.354 0.646 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.031 0.969 34 H 0.054 0.946 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.281 0.719 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.361 0.863 -8.344 9.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.099 3.901 3 O -0.325 6.325 4 C -0.174 4.174 5 C -0.148 4.148 6 C -0.061 4.061 7 N -0.245 5.245 8 C -0.005 4.005 9 C -0.225 4.225 10 C -0.102 4.102 11 C -0.263 4.263 12 C -0.118 4.118 13 C -0.198 4.198 14 C 0.132 3.868 15 C -0.507 4.507 16 H 0.102 0.898 17 C -0.122 4.122 18 N -0.397 5.397 19 Si 0.706 3.294 20 H -0.189 1.189 21 H -0.207 1.207 22 H -0.190 1.190 23 C -0.041 4.041 24 C -0.146 4.146 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.198 0.802 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.049 0.951 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.112 0.888 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.478 0.951 -7.887 9.119 hybrid contribution -0.333 -0.332 0.554 0.727 sum -4.811 0.618 -7.332 8.791 Atomic orbital electron populations 1.22563 0.97067 1.01949 1.01771 1.20893 0.90624 0.83537 0.95079 1.86907 1.76433 1.22073 1.47117 1.21224 0.97693 1.00617 0.97862 1.20399 0.94486 1.02505 0.97401 1.21638 0.97783 0.93734 0.92931 1.61158 1.06850 1.43464 1.13046 1.20819 0.88270 0.96828 0.94552 1.20495 1.08709 0.98335 0.94932 1.20445 0.98432 0.94522 0.96757 1.20321 1.11362 1.00285 0.94359 1.20612 0.99256 0.97167 0.94772 1.21036 1.03631 0.96730 0.98399 1.17343 0.88425 0.91578 0.89411 1.19248 1.19331 0.94914 1.17173 0.89833 1.25666 0.93823 0.95707 0.97030 1.69893 1.13920 1.27048 1.28802 0.86790 0.78663 0.82710 0.81224 1.18883 1.20698 1.18952 1.22255 0.88430 1.01938 0.91429 1.21480 0.99350 0.98104 0.95641 0.93068 0.92244 0.92016 0.80155 0.92353 0.93083 0.93663 0.90909 0.95051 0.92749 0.93303 0.90919 0.89796 0.89773 0.89711 0.88846 0.90876 0.90336 0.91049 0.91889 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.24 8.55 37.15 0.32 -1.92 16 2 C 0.14 2.11 0.98 -91.05 -0.09 2.02 16 3 O -0.52 -8.38 10.04 -35.23 -0.35 -8.73 16 4 C -0.14 -1.86 4.58 -29.31 -0.13 -2.00 16 5 C -0.11 -1.61 5.19 -29.59 -0.15 -1.76 16 6 C 0.07 1.22 4.69 -4.70 -0.02 1.19 16 7 N -0.52 -10.30 3.50 -236.09 -0.83 -11.12 16 8 C 0.12 2.55 5.26 -4.98 -0.03 2.53 16 9 C -0.22 -5.11 4.20 -103.91 -0.44 -5.55 16 10 C -0.08 -1.83 9.17 -39.66 -0.36 -2.19 16 11 C -0.24 -5.44 10.05 -39.29 -0.39 -5.84 16 12 C -0.10 -2.30 10.02 -39.66 -0.40 -2.70 16 13 C -0.18 -4.47 8.92 -38.88 -0.35 -4.82 16 14 C 0.14 3.37 4.03 -106.82 -0.43 2.94 16 15 C -0.48 -11.85 5.46 -37.74 -0.21 -12.05 16 16 H 0.08 2.09 6.70 -52.49 -0.35 1.74 16 17 C 0.10 2.36 4.68 -17.34 -0.08 2.27 16 18 N -0.77 -18.90 12.61 55.55 0.70 -18.20 16 19 Si 0.88 18.39 29.67 -169.99 -5.04 13.35 16 20 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 21 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 22 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 23 C 0.09 1.84 3.42 -2.77 -0.01 1.83 16 24 C -0.11 -2.00 4.77 -27.48 -0.13 -2.13 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 28 H 0.35 4.26 9.06 45.56 0.41 4.68 16 29 H 0.06 0.81 7.59 -51.93 -0.39 0.42 16 30 H 0.05 0.60 8.02 -51.93 -0.42 0.18 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.10 7.30 -51.93 -0.38 0.72 16 33 H 0.03 0.61 6.79 -51.93 -0.35 0.25 16 34 H 0.05 0.95 6.77 -51.93 -0.35 0.59 16 35 H 0.05 0.94 7.53 -51.93 -0.39 0.55 16 36 H 0.07 1.60 6.44 -51.93 -0.33 1.27 16 37 H 0.08 1.68 7.60 -52.49 -0.40 1.28 16 38 H 0.08 1.69 8.06 -52.49 -0.42 1.26 16 39 H 0.08 1.76 8.06 -52.48 -0.42 1.34 16 40 H 0.09 2.38 7.51 -52.48 -0.39 1.99 16 41 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 42 H 0.08 1.96 4.47 -51.93 -0.23 1.72 16 43 H 0.07 1.72 7.31 -51.93 -0.38 1.34 16 44 H 0.06 1.19 7.70 -51.93 -0.40 0.79 16 45 H 0.05 1.02 6.66 -51.93 -0.35 0.67 16 LS Contribution 335.50 15.07 5.06 5.06 Total: -1.00 -25.91 335.50 -9.75 -35.66 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -6.38 Total: 12.13 kcal Atomic # 6 Polarization: -25.25 SS G_CDS: -2.91 Total: -28.15 kcal Atomic # 7 Polarization: -29.20 SS G_CDS: -0.13 Total: -29.32 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: -0.35 Total: -8.73 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.04 Total: 13.35 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -25.91 -9.75 -35.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235512833.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.752 kcal (2) G-P(sol) polarization free energy of solvation -25.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds