Wall clock time and date at job start Tue Mar 31 2020 05:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42900 * 109.57466 * 2 1 4 4 C 1.54522 * 109.57839 * 239.74887 * 2 1 3 5 5 C 1.45869 * 111.67630 * 162.83392 * 4 2 1 6 6 C 1.53981 * 112.67123 * 61.49371 * 5 4 2 7 7 N 1.44301 * 108.31463 * 278.59600 * 6 5 4 8 8 C 1.46895 * 110.99973 * 221.34408 * 7 6 5 9 9 C 1.50697 * 109.47507 * 283.60591 * 8 7 6 10 10 C 1.37640 * 120.12614 * 90.96198 * 9 8 7 11 11 C 1.38614 * 120.24635 * 179.72398 * 10 9 8 12 12 C 1.38657 * 120.49969 * 0.55752 * 11 10 9 13 13 C 1.37588 * 120.24984 * 359.72346 * 12 11 10 14 14 C 1.40696 * 120.13002 * 271.24330 * 9 8 7 15 15 C 1.41405 * 120.24166 * 359.97078 * 14 9 8 16 16 H 1.07991 * 120.00038 * 324.33467 * 15 14 9 17 17 C 1.39945 * 119.99767 * 144.33289 * 15 14 9 18 18 N 1.30826 * 119.99849 * 326.02141 * 17 15 14 19 19 Si 1.86800 * 120.00002 * 146.01574 * 17 15 14 20 20 H 1.48500 * 109.47081 * 60.00049 * 19 17 15 21 21 H 1.48505 * 109.46955 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47045 * 300.00152 * 19 17 15 23 23 C 1.47938 * 113.64032 * 95.39453 * 7 6 5 24 24 C 1.50545 * 109.67604 * 120.30748 * 2 1 3 25 25 H 1.08995 * 109.47105 * 60.00842 * 1 2 3 26 26 H 1.09002 * 109.46929 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47576 * 300.00025 * 1 2 3 28 28 H 0.96703 * 113.99681 * 299.75456 * 3 2 1 29 29 H 1.08999 * 109.04144 * 283.40414 * 4 2 1 30 30 H 1.09004 * 109.03804 * 42.26449 * 4 2 1 31 31 H 1.08997 * 108.84577 * 182.32017 * 5 4 2 32 32 H 1.09001 * 108.84215 * 300.78174 * 5 4 2 33 33 H 1.08996 * 109.69498 * 38.30727 * 6 5 4 34 34 H 1.09005 * 109.69370 * 158.88817 * 6 5 4 35 35 H 1.08997 * 109.46975 * 43.60906 * 8 7 6 36 36 H 1.08997 * 109.46910 * 163.60643 * 8 7 6 37 37 H 1.07996 * 119.87558 * 359.97438 * 10 9 8 38 38 H 1.07998 * 119.75137 * 180.25838 * 11 10 9 39 39 H 1.08006 * 119.87120 * 179.74637 * 12 11 10 40 40 H 1.08004 * 120.12691 * 180.02562 * 13 12 11 41 41 H 0.97003 * 119.99694 * 180.02562 * 18 17 15 42 42 H 1.08998 * 108.71217 * 79.13375 * 23 7 6 43 43 H 1.08999 * 108.71079 * 197.14040 * 23 7 6 44 44 H 1.08999 * 108.78663 * 332.51924 * 24 2 1 45 45 H 1.09000 * 108.78523 * 90.73387 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0087 1.3464 0.0000 4 6 2.0477 -0.7335 -1.2576 5 6 3.4485 -0.4250 -1.5228 6 6 4.3800 -0.8644 -0.3781 7 7 4.3383 0.1443 0.6530 8 6 5.6794 0.3975 1.1962 9 6 6.0655 -0.7247 2.1249 10 6 6.7418 -1.8210 1.6400 11 6 7.1031 -2.8521 2.4931 12 6 6.7785 -2.7975 3.8400 13 6 6.0977 -1.7139 4.3456 14 6 5.7307 -0.6586 3.4899 15 6 5.0313 0.4603 3.9983 16 1 5.2283 1.4456 3.6026 17 6 4.0839 0.2907 5.0142 18 7 3.3586 -0.7973 5.0573 19 14 3.8550 1.6177 6.3089 20 1 3.4525 2.8868 5.6511 21 1 2.7993 1.1989 7.2657 22 1 5.1317 1.8220 7.0393 23 6 3.3753 -0.1537 1.7357 24 6 2.0368 -0.7154 1.2238 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.7274 1.8639 -0.7670 29 1 1.9418 -1.8084 -1.1113 30 1 1.4484 -0.4323 -2.1169 31 1 3.7533 -0.9312 -2.4387 32 1 3.5513 0.6509 -1.6649 33 1 4.0403 -1.8177 0.0265 34 1 5.3989 -0.9657 -0.7520 35 1 6.3976 0.4557 0.3784 36 1 5.6771 1.3390 1.7454 37 1 6.9955 -1.8762 0.5917 38 1 7.6373 -3.7066 2.1049 39 1 7.0614 -3.6084 4.4949 40 1 5.8462 -1.6733 5.3951 41 1 2.7017 -0.9146 5.7613 42 1 3.8238 -0.8812 2.4122 43 1 3.1799 0.7631 2.2920 44 1 1.2930 -0.6266 2.0156 45 1 2.1674 -1.7707 0.9846 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235512833.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:28 Heat of formation + Delta-G solvation = -42.304676 kcal Electronic energy + Delta-G solvation = -24995.710798 eV Core-core repulsion = 21783.864942 eV Total energy + Delta-G solvation = -3211.845856 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.90797 -39.50691 -37.06485 -35.50551 -34.29406 -33.09306 -31.85480 -31.46208 -29.46341 -27.40673 -26.83493 -25.10416 -24.08455 -22.76304 -21.67444 -20.93982 -20.12917 -18.91507 -17.20079 -17.11344 -16.93304 -16.64979 -16.37353 -15.67475 -15.45166 -15.23320 -14.95919 -14.44386 -14.24157 -14.13868 -13.98649 -13.47542 -13.36017 -13.26415 -13.11802 -12.99283 -12.79653 -12.62203 -12.47285 -12.29358 -12.00979 -11.89926 -11.62854 -11.56674 -11.49334 -11.29742 -11.15386 -11.07027 -10.66859 -10.42603 -9.28038 -9.17782 -8.64004 -8.58169 -6.17148 1.01706 1.08188 1.38233 1.43851 1.52764 2.23573 2.72788 3.38441 3.55622 3.72565 3.91482 4.00451 4.15409 4.25504 4.34787 4.42680 4.49991 4.51463 4.61512 4.67748 4.73032 4.79995 4.87846 4.91516 4.98098 5.07173 5.10843 5.12504 5.20351 5.23887 5.27854 5.32968 5.36921 5.49290 5.50601 5.56566 5.69239 5.79016 5.84606 6.03571 6.11567 6.19666 6.44110 6.55801 6.73058 6.84444 7.02604 7.10965 7.26136 8.33217 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013609 B = 0.007734 C = 0.005671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.982040 B = 3619.357434 C = 4935.975661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.141 3.859 3 O -0.547 6.547 4 C -0.132 4.132 5 C -0.102 4.102 6 C 0.066 3.934 7 N -0.514 5.514 8 C 0.125 3.875 9 C -0.226 4.226 10 C -0.087 4.087 11 C -0.245 4.245 12 C -0.107 4.107 13 C -0.206 4.206 14 C 0.114 3.886 15 C -0.495 4.495 16 H 0.071 0.929 17 C 0.068 3.932 18 N -0.798 5.798 19 Si 0.940 3.060 20 H -0.264 1.264 21 H -0.272 1.272 22 H -0.267 1.267 23 C 0.106 3.894 24 C -0.106 4.106 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.047 0.953 28 H 0.373 0.627 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.012 0.988 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.076 0.924 41 H 0.285 0.715 42 H 0.042 0.958 43 H 0.034 0.966 44 H 0.048 0.952 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.819 0.714 -10.714 11.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.100 3.900 3 O -0.352 6.352 4 C -0.170 4.170 5 C -0.140 4.140 6 C -0.063 4.063 7 N -0.237 5.237 8 C -0.002 4.002 9 C -0.228 4.228 10 C -0.106 4.106 11 C -0.264 4.264 12 C -0.125 4.125 13 C -0.226 4.226 14 C 0.112 3.888 15 C -0.523 4.523 16 H 0.089 0.911 17 C -0.150 4.150 18 N -0.422 5.422 19 Si 0.762 3.238 20 H -0.189 1.189 21 H -0.197 1.197 22 H -0.192 1.192 23 C -0.022 4.022 24 C -0.144 4.144 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.220 0.780 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.030 0.970 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.123 0.877 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.060 0.940 43 H 0.053 0.947 44 H 0.067 0.933 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.940 0.802 -10.275 11.429 hybrid contribution -0.132 -0.339 1.240 1.293 sum -5.072 0.463 -9.035 10.372 Atomic orbital electron populations 1.22472 0.94965 1.02691 1.02514 1.20831 0.92111 0.83127 0.93919 1.86857 1.77004 1.22670 1.48674 1.21183 0.97495 1.00288 0.98025 1.20335 0.94313 1.02640 0.96713 1.21777 0.99154 0.92287 0.93104 1.61183 1.05712 1.44226 1.12540 1.20798 0.89475 0.95275 0.94673 1.20769 1.08176 0.99303 0.94577 1.20756 0.97715 0.93983 0.98145 1.20692 1.10682 1.01080 0.93910 1.20881 0.98682 0.97103 0.95844 1.21046 1.05514 0.98192 0.97801 1.17593 0.88918 0.91811 0.90501 1.19215 1.20189 0.94383 1.18553 0.91141 1.26211 0.93248 0.97470 0.98121 1.69923 1.14365 1.28544 1.29357 0.85902 0.78527 0.80299 0.79026 1.18867 1.19664 1.19157 1.21835 0.90080 0.98894 0.91342 1.21442 0.97389 0.98352 0.97208 0.90272 0.91503 0.93344 0.77962 0.92497 0.89776 0.91142 0.90948 0.96986 0.92116 0.91187 0.92922 0.87177 0.86934 0.87663 0.90593 0.90461 0.94024 0.94735 0.93346 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.90 8.55 71.98 0.62 -3.28 16 2 C 0.14 4.02 0.98 -11.07 -0.01 4.01 16 3 O -0.55 -16.75 10.04 -148.98 -1.50 -18.25 16 4 C -0.13 -3.17 4.58 28.93 0.13 -3.04 16 5 C -0.10 -2.66 5.19 28.74 0.15 -2.51 16 6 C 0.07 2.23 4.69 87.12 0.41 2.63 16 7 N -0.51 -20.25 3.50 -900.86 -3.15 -23.40 16 8 C 0.13 5.27 5.26 85.56 0.45 5.72 16 9 C -0.23 -10.52 4.20 -19.41 -0.08 -10.60 16 10 C -0.09 -3.76 9.17 22.22 0.20 -3.56 16 11 C -0.24 -10.56 10.05 22.46 0.23 -10.33 16 12 C -0.11 -4.94 10.02 22.22 0.22 -4.71 16 13 C -0.21 -10.67 8.92 22.73 0.20 -10.47 16 14 C 0.11 5.94 4.03 -21.29 -0.09 5.85 16 15 C -0.49 -25.78 5.46 23.46 0.13 -25.65 16 16 H 0.07 3.75 6.70 -2.92 -0.02 3.73 16 17 C 0.07 3.40 4.68 85.26 0.40 3.80 16 18 N -0.80 -40.77 12.61 21.83 0.28 -40.50 16 19 Si 0.94 39.06 29.67 68.60 2.04 41.09 16 20 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 21 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 22 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 23 C 0.11 4.70 3.42 86.41 0.30 4.99 16 24 C -0.11 -3.98 4.77 30.11 0.14 -3.83 16 25 H 0.08 1.39 8.14 -2.39 -0.02 1.38 16 26 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.05 1.24 8.09 -2.39 -0.02 1.22 16 28 H 0.37 8.02 9.06 -74.06 -0.67 7.35 16 29 H 0.06 1.41 7.59 -2.39 -0.02 1.39 16 30 H 0.08 1.53 8.02 -2.38 -0.02 1.51 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.07 1.94 7.30 -2.39 -0.02 1.92 16 33 H 0.01 0.45 6.79 -2.39 -0.02 0.43 16 34 H 0.06 1.96 6.77 -2.38 -0.02 1.95 16 35 H 0.07 2.61 7.53 -2.39 -0.02 2.59 16 36 H 0.05 2.40 6.44 -2.39 -0.02 2.39 16 37 H 0.11 4.12 7.60 -2.91 -0.02 4.09 16 38 H 0.11 4.18 8.06 -2.91 -0.02 4.16 16 39 H 0.11 4.32 8.06 -2.91 -0.02 4.29 16 40 H 0.08 4.08 7.51 -2.91 -0.02 4.06 16 41 H 0.28 13.47 8.30 -92.71 -0.77 12.70 16 42 H 0.04 2.18 4.47 -2.39 -0.01 2.16 16 43 H 0.03 1.76 7.31 -2.39 -0.02 1.74 16 44 H 0.05 1.90 7.70 -2.39 -0.02 1.88 16 45 H 0.05 1.94 6.66 -2.39 -0.02 1.92 16 Total: -1.00 -58.26 335.50 1.37 -56.89 By element: Atomic # 1 Polarization: 34.84 SS G_CDS: 0.31 Total: 35.15 kcal Atomic # 6 Polarization: -54.38 SS G_CDS: 3.40 Total: -50.98 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: -2.88 Total: -63.90 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -1.50 Total: -18.25 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 2.04 Total: 41.09 kcal Total: -58.26 1.37 -56.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235512833.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.585 kcal (2) G-P(sol) polarization free energy of solvation -58.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds