Wall clock time and date at job start Tue Mar 31 2020 06:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52307 * 1 3 3 C 1.54333 * 108.25591 * 2 1 4 4 C 1.50530 * 112.26464 * 240.63367 * 2 1 3 5 5 N 1.44709 * 117.03702 * 314.56524 * 4 2 1 6 6 C 1.45989 * 114.65409 * 108.09655 * 5 4 2 7 7 C 1.50702 * 109.46870 * 137.62412 * 6 5 4 8 8 C 1.37632 * 120.12895 * 262.50167 * 7 6 5 9 9 C 1.38611 * 120.24882 * 179.70212 * 8 7 6 10 10 C 1.38653 * 120.49939 * 0.60067 * 9 8 7 11 11 C 1.37601 * 120.25027 * 359.68318 * 10 9 8 12 12 C 1.40699 * 120.12373 * 82.78334 * 7 6 5 13 13 C 1.41397 * 120.24752 * 0.02562 * 12 7 6 14 14 H 1.08008 * 119.99553 * 40.63824 * 13 12 7 15 15 C 1.39945 * 120.00150 * 220.63881 * 13 12 7 16 16 N 1.30821 * 119.99591 * 205.69082 * 15 13 12 17 17 Si 1.86797 * 119.99929 * 25.68631 * 15 13 12 18 18 H 1.48507 * 109.46786 * 95.37983 * 17 15 13 19 19 H 1.48492 * 109.47293 * 215.37978 * 17 15 13 20 20 H 1.48501 * 109.47605 * 335.38526 * 17 15 13 21 21 C 1.45802 * 121.36501 * 324.30922 * 5 4 2 22 22 C 1.49574 * 116.68808 * 323.57690 * 21 5 4 23 23 C 1.53833 * 112.02176 * 76.65592 * 22 21 5 24 24 O 1.34948 * 113.50894 * 290.33797 * 23 22 21 25 25 H 1.08997 * 109.47225 * 301.02233 * 1 2 3 26 26 H 1.08999 * 109.46622 * 181.02325 * 1 2 3 27 27 H 1.08998 * 109.46895 * 61.02591 * 1 2 3 28 28 H 1.09005 * 109.46747 * 59.99698 * 3 2 1 29 29 H 1.08997 * 109.46788 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.46748 * 299.99954 * 3 2 1 31 31 H 1.10178 * 107.76274 * 77.93660 * 4 2 1 32 32 H 1.10277 * 107.64453 * 191.47469 * 4 2 1 33 33 H 1.08996 * 109.47230 * 257.62650 * 6 5 4 34 34 H 1.08998 * 109.46864 * 17.62557 * 6 5 4 35 35 H 1.08000 * 119.87529 * 0.02562 * 8 7 6 36 36 H 1.08004 * 119.74999 * 180.30154 * 9 8 7 37 37 H 1.08005 * 119.87613 * 179.70087 * 10 9 8 38 38 H 1.07999 * 120.12663 * 179.97438 * 11 10 9 39 39 H 0.97004 * 119.99412 * 180.02562 * 16 15 13 40 40 H 1.10537 * 108.01830 * 202.33162 * 21 5 4 41 41 H 1.09639 * 109.86717 * 88.20942 * 21 5 4 42 42 H 1.09753 * 109.44899 * 315.46793 * 22 21 5 43 43 H 1.09705 * 109.50992 * 197.94883 * 22 21 5 44 44 H 1.10524 * 107.80235 * 170.86294 * 23 22 21 45 45 H 1.09068 * 109.69214 * 55.97021 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5231 0.0000 0.0000 3 6 2.0065 1.4656 0.0000 4 6 2.0934 -0.6832 -1.2141 5 7 1.5056 -1.9500 -1.5929 6 6 0.6874 -1.9047 -2.8012 7 6 0.9788 -3.1148 -3.6508 8 6 1.8633 -3.0245 -4.7014 9 6 2.1378 -4.1375 -5.4807 10 6 1.5171 -5.3496 -5.2199 11 6 0.6250 -5.4616 -4.1783 12 6 0.3433 -4.3398 -3.3766 13 6 -0.5721 -4.4428 -2.3038 14 1 -1.2742 -3.6442 -2.1145 15 6 -0.5682 -5.5795 -1.4874 16 7 -1.6567 -5.9332 -0.8536 17 14 0.9909 -6.5915 -1.3028 18 1 1.7207 -6.1584 -0.0841 19 1 0.6369 -8.0287 -1.1832 20 1 1.8547 -6.3919 -2.4941 21 6 1.0365 -2.8990 -0.5903 22 6 1.8388 -2.9982 0.6681 23 6 1.5758 -1.8144 1.6147 24 8 2.0667 -0.6424 1.1601 25 1 -0.3633 0.5296 0.8806 26 1 -0.3632 -1.0275 0.0184 27 1 -0.3633 0.4978 -0.8990 28 1 1.6323 1.9716 0.8900 29 1 3.0963 1.4887 0.0005 30 1 1.6324 1.9716 -0.8900 31 1 2.0178 0.0178 -2.0608 32 1 3.1732 -0.8257 -1.0411 33 1 -0.3672 -1.8994 -2.5258 34 1 0.9205 -1.0009 -3.3640 35 1 2.3491 -2.0842 -4.9163 36 1 2.8369 -4.0587 -6.3002 37 1 1.7348 -6.2091 -5.8366 38 1 0.1423 -6.4066 -3.9772 39 1 -1.6539 -6.7208 -0.2875 40 1 1.0159 -3.9028 -1.0528 41 1 -0.0067 -2.6825 -0.3316 42 1 2.9072 -3.0291 0.4189 43 1 1.5949 -3.9345 1.1853 44 1 2.0670 -2.0375 2.5793 45 1 0.5089 -1.7467 1.8308 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235523850.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:38 Heat of formation + Delta-G solvation = -15.807328 kcal Electronic energy + Delta-G solvation = -24941.723270 eV Core-core repulsion = 21731.026425 eV Total energy + Delta-G solvation = -3210.696845 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.91980 -38.08820 -35.65397 -34.20370 -33.49120 -31.50216 -30.35597 -29.64582 -27.34219 -26.30418 -26.18010 -24.72591 -23.11827 -21.20785 -20.13001 -19.50272 -19.12228 -17.32490 -16.55221 -15.99954 -15.67588 -15.55759 -14.80563 -14.19055 -14.13941 -14.01932 -13.48487 -13.20404 -12.83346 -12.71304 -12.52072 -12.37883 -12.01681 -11.93793 -11.85277 -11.73285 -11.63497 -11.28127 -11.14806 -10.94443 -10.87593 -10.63864 -10.52156 -10.39516 -9.97813 -9.81003 -9.64728 -9.58600 -9.12835 -8.87361 -7.53174 -7.37933 -6.96233 -6.88121 -4.37190 2.61016 2.71692 3.10976 3.20258 3.34392 3.83843 4.04384 4.38423 4.58872 5.02382 5.03700 5.16541 5.36300 5.41398 5.49237 5.61315 5.65667 5.73289 5.78694 5.84958 5.88743 5.98335 6.04517 6.13563 6.14942 6.17456 6.23882 6.25982 6.33694 6.40883 6.43973 6.48938 6.61355 6.81127 6.87033 6.99206 7.17980 7.24472 7.46285 7.71078 7.77276 7.94290 8.01276 8.16262 8.18622 8.38764 8.42719 8.71942 8.86330 10.13568 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016219 B = 0.007281 C = 0.005787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.903696 B = 3844.558035 C = 4837.266431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.098 3.902 3 C -0.136 4.136 4 C 0.087 3.913 5 N -0.608 5.608 6 C 0.164 3.836 7 C -0.163 4.163 8 C -0.079 4.079 9 C -0.228 4.228 10 C -0.098 4.098 11 C -0.196 4.196 12 C 0.095 3.905 13 C -0.464 4.464 14 H 0.089 0.911 15 C 0.096 3.904 16 N -0.809 5.809 17 Si 0.856 3.144 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.224 1.224 21 C 0.090 3.910 22 C -0.165 4.165 23 C 0.085 3.915 24 O -0.380 6.380 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.039 0.961 34 H 0.052 0.948 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.281 0.719 40 H 0.106 0.894 41 H 0.026 0.974 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.968 8.436 2.455 10.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.058 3.942 3 C -0.193 4.193 4 C -0.040 4.040 5 N -0.334 5.334 6 C 0.039 3.961 7 C -0.165 4.165 8 C -0.098 4.098 9 C -0.247 4.247 10 C -0.116 4.116 11 C -0.216 4.216 12 C 0.092 3.908 13 C -0.493 4.493 14 H 0.107 0.893 15 C -0.122 4.122 16 N -0.434 5.434 17 Si 0.679 3.321 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.146 1.146 21 C -0.034 4.034 22 C -0.203 4.203 23 C 0.007 3.993 24 O -0.299 6.299 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.091 0.909 40 H 0.123 0.877 41 H 0.044 0.956 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 5.183 8.224 2.653 10.076 hybrid contribution -0.183 -0.627 0.374 0.753 sum 5.001 7.597 3.027 9.585 Atomic orbital electron populations 1.22261 0.95427 1.03799 1.02107 1.21996 0.93123 0.92667 0.86403 1.22029 1.01954 0.93422 1.01944 1.21636 0.98511 0.88466 0.95432 1.53776 1.52528 1.16040 1.11053 1.20097 0.94302 0.94644 0.87067 1.19867 1.01216 0.96544 0.98920 1.20480 0.97173 0.96678 0.95428 1.20440 1.06519 0.94066 1.03682 1.20644 0.97230 0.96239 0.97501 1.21158 1.03778 0.98926 0.97724 1.17573 0.90233 0.90651 0.92295 1.19111 1.15567 1.03466 1.11202 0.89309 1.25878 0.96488 0.95362 0.94436 1.69791 1.27100 1.22880 1.23668 0.87009 0.84926 0.78633 0.81521 1.19389 1.20697 1.14595 1.21289 0.94606 0.97806 0.89728 1.22163 1.02010 0.98943 0.97198 1.21232 0.98140 0.84152 0.95763 1.85694 1.61744 1.36189 1.46257 0.92455 0.90889 0.91493 0.92259 0.91894 0.91389 0.92005 0.92570 0.94294 0.92954 0.89045 0.89133 0.89146 0.88733 0.90889 0.87657 0.95612 0.91444 0.90932 0.90451 0.95173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.58 7.80 36.80 0.29 -2.29 16 2 C 0.10 1.42 0.98 -91.51 -0.09 1.33 16 3 C -0.14 -1.56 8.56 37.86 0.32 -1.24 16 4 C 0.09 1.39 4.48 -6.23 -0.03 1.36 16 5 N -0.61 -11.48 3.45 -241.14 -0.83 -12.31 16 6 C 0.16 3.20 5.31 -5.47 -0.03 3.17 16 7 C -0.16 -3.60 5.33 -103.91 -0.55 -4.15 16 8 C -0.08 -1.63 9.65 -39.66 -0.38 -2.01 16 9 C -0.23 -4.70 10.05 -39.29 -0.39 -5.10 16 10 C -0.10 -2.10 10.02 -39.66 -0.40 -2.50 16 11 C -0.20 -4.64 6.78 -38.87 -0.26 -4.90 16 12 C 0.10 2.30 4.22 -106.82 -0.45 1.84 16 13 C -0.46 -11.67 5.79 -37.74 -0.22 -11.89 16 14 H 0.09 2.39 6.99 -52.48 -0.37 2.02 16 15 C 0.10 2.40 4.82 -17.34 -0.08 2.32 16 16 N -0.81 -20.88 13.93 55.55 0.77 -20.11 16 17 Si 0.86 19.46 24.87 -169.99 -4.23 15.23 16 18 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.22 -5.24 5.48 56.52 0.31 -4.93 16 21 C 0.09 1.82 3.30 -6.11 -0.02 1.80 16 22 C -0.16 -2.97 5.70 -27.99 -0.16 -3.13 16 23 C 0.09 1.35 5.79 37.59 0.22 1.57 16 24 O -0.38 -6.07 9.26 -16.56 -0.15 -6.22 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.07 1.23 4.52 -51.93 -0.23 1.00 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.68 8.07 -51.93 -0.42 0.26 16 31 H 0.06 0.88 6.93 -51.26 -0.36 0.53 16 32 H 0.06 0.93 8.19 -51.20 -0.42 0.51 16 33 H 0.04 0.81 6.68 -51.93 -0.35 0.46 16 34 H 0.05 0.90 7.09 -51.93 -0.37 0.53 16 35 H 0.09 1.67 8.05 -52.49 -0.42 1.25 16 36 H 0.09 1.64 8.06 -52.48 -0.42 1.22 16 37 H 0.09 1.72 8.06 -52.48 -0.42 1.29 16 38 H 0.09 2.23 6.76 -52.49 -0.35 1.87 16 39 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 40 H 0.11 2.42 2.44 -51.05 -0.12 2.29 16 41 H 0.03 0.56 5.98 -51.57 -0.31 0.25 16 42 H 0.07 1.23 8.20 -51.50 -0.42 0.81 16 43 H 0.07 1.29 8.20 -51.53 -0.42 0.87 16 44 H 0.08 1.08 8.27 -51.06 -0.42 0.65 16 45 H 0.03 0.48 7.14 -51.89 -0.37 0.11 16 LS Contribution 330.29 15.07 4.98 4.98 Total: -1.00 -26.20 330.29 -8.83 -35.02 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -7.12 Total: 7.23 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: -2.24 Total: -23.82 kcal Atomic # 7 Polarization: -32.36 SS G_CDS: -0.06 Total: -32.42 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -0.15 Total: -6.22 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.23 Total: 15.23 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -26.20 -8.83 -35.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235523850.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.214 kcal (2) G-P(sol) polarization free energy of solvation -26.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds