Wall clock time and date at job start Tue Mar 31 2020 06:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52307 * 1 3 3 C 1.54333 * 108.25591 * 2 1 4 4 C 1.50530 * 112.26464 * 240.63367 * 2 1 3 5 5 N 1.44709 * 117.03702 * 314.56524 * 4 2 1 6 6 C 1.45989 * 114.65409 * 108.09655 * 5 4 2 7 7 C 1.50702 * 109.46870 * 137.62412 * 6 5 4 8 8 C 1.37632 * 120.12895 * 262.50167 * 7 6 5 9 9 C 1.38611 * 120.24882 * 179.70212 * 8 7 6 10 10 C 1.38653 * 120.49939 * 0.60067 * 9 8 7 11 11 C 1.37601 * 120.25027 * 359.68318 * 10 9 8 12 12 C 1.40699 * 120.12373 * 82.78334 * 7 6 5 13 13 C 1.41397 * 120.24752 * 0.02562 * 12 7 6 14 14 H 1.08008 * 119.99553 * 40.63824 * 13 12 7 15 15 C 1.39945 * 120.00150 * 220.63881 * 13 12 7 16 16 N 1.30821 * 119.99591 * 205.69082 * 15 13 12 17 17 Si 1.86797 * 119.99929 * 25.68631 * 15 13 12 18 18 H 1.48507 * 109.46786 * 95.37983 * 17 15 13 19 19 H 1.48492 * 109.47293 * 215.37978 * 17 15 13 20 20 H 1.48501 * 109.47605 * 335.38526 * 17 15 13 21 21 C 1.45802 * 121.36501 * 324.30922 * 5 4 2 22 22 C 1.49574 * 116.68808 * 323.57690 * 21 5 4 23 23 C 1.53833 * 112.02176 * 76.65592 * 22 21 5 24 24 O 1.34948 * 113.50894 * 290.33797 * 23 22 21 25 25 H 1.08997 * 109.47225 * 301.02233 * 1 2 3 26 26 H 1.08999 * 109.46622 * 181.02325 * 1 2 3 27 27 H 1.08998 * 109.46895 * 61.02591 * 1 2 3 28 28 H 1.09005 * 109.46747 * 59.99698 * 3 2 1 29 29 H 1.08997 * 109.46788 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.46748 * 299.99954 * 3 2 1 31 31 H 1.10178 * 107.76274 * 77.93660 * 4 2 1 32 32 H 1.10277 * 107.64453 * 191.47469 * 4 2 1 33 33 H 1.08996 * 109.47230 * 257.62650 * 6 5 4 34 34 H 1.08998 * 109.46864 * 17.62557 * 6 5 4 35 35 H 1.08000 * 119.87529 * 0.02562 * 8 7 6 36 36 H 1.08004 * 119.74999 * 180.30154 * 9 8 7 37 37 H 1.08005 * 119.87613 * 179.70087 * 10 9 8 38 38 H 1.07999 * 120.12663 * 179.97438 * 11 10 9 39 39 H 0.97004 * 119.99412 * 180.02562 * 16 15 13 40 40 H 1.10537 * 108.01830 * 202.33162 * 21 5 4 41 41 H 1.09639 * 109.86717 * 88.20942 * 21 5 4 42 42 H 1.09753 * 109.44899 * 315.46793 * 22 21 5 43 43 H 1.09705 * 109.50992 * 197.94883 * 22 21 5 44 44 H 1.10524 * 107.80235 * 170.86294 * 23 22 21 45 45 H 1.09068 * 109.69214 * 55.97021 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5231 0.0000 0.0000 3 6 2.0065 1.4656 0.0000 4 6 2.0934 -0.6832 -1.2141 5 7 1.5056 -1.9500 -1.5929 6 6 0.6874 -1.9047 -2.8012 7 6 0.9788 -3.1148 -3.6508 8 6 1.8633 -3.0245 -4.7014 9 6 2.1378 -4.1375 -5.4807 10 6 1.5171 -5.3496 -5.2199 11 6 0.6250 -5.4616 -4.1783 12 6 0.3433 -4.3398 -3.3766 13 6 -0.5721 -4.4428 -2.3038 14 1 -1.2742 -3.6442 -2.1145 15 6 -0.5682 -5.5795 -1.4874 16 7 -1.6567 -5.9332 -0.8536 17 14 0.9909 -6.5915 -1.3028 18 1 1.7207 -6.1584 -0.0841 19 1 0.6369 -8.0287 -1.1832 20 1 1.8547 -6.3919 -2.4941 21 6 1.0365 -2.8990 -0.5903 22 6 1.8388 -2.9982 0.6681 23 6 1.5758 -1.8144 1.6147 24 8 2.0667 -0.6424 1.1601 25 1 -0.3633 0.5296 0.8806 26 1 -0.3632 -1.0275 0.0184 27 1 -0.3633 0.4978 -0.8990 28 1 1.6323 1.9716 0.8900 29 1 3.0963 1.4887 0.0005 30 1 1.6324 1.9716 -0.8900 31 1 2.0178 0.0178 -2.0608 32 1 3.1732 -0.8257 -1.0411 33 1 -0.3672 -1.8994 -2.5258 34 1 0.9205 -1.0009 -3.3640 35 1 2.3491 -2.0842 -4.9163 36 1 2.8369 -4.0587 -6.3002 37 1 1.7348 -6.2091 -5.8366 38 1 0.1423 -6.4066 -3.9772 39 1 -1.6539 -6.7208 -0.2875 40 1 1.0159 -3.9028 -1.0528 41 1 -0.0067 -2.6825 -0.3316 42 1 2.9072 -3.0291 0.4189 43 1 1.5949 -3.9345 1.1853 44 1 2.0670 -2.0375 2.5793 45 1 0.5089 -1.7467 1.8308 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235523850.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:38 Heat of formation + Delta-G solvation = -29.684474 kcal Electronic energy + Delta-G solvation = -24942.325028 eV Core-core repulsion = 21731.026425 eV Total energy + Delta-G solvation = -3211.298603 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.22488 -39.74745 -37.11716 -35.63655 -35.15132 -33.02986 -32.12963 -31.14286 -28.48900 -27.75497 -27.60113 -26.36005 -24.55051 -22.96462 -21.70615 -20.90010 -20.54097 -19.16980 -17.83994 -17.47899 -17.27837 -16.84843 -16.42460 -15.77263 -15.71149 -15.60185 -15.15370 -14.58496 -14.46290 -14.10718 -13.92485 -13.63811 -13.48966 -13.41833 -13.33817 -13.10048 -12.99627 -12.64012 -12.59268 -12.53982 -12.33603 -12.18520 -12.03482 -11.95194 -11.62621 -11.41128 -11.27120 -11.10324 -10.86539 -10.29527 -9.24015 -9.16811 -8.79374 -8.46713 -6.28339 0.85813 0.96254 1.27573 1.36067 1.47882 2.18127 2.67345 2.69308 2.97297 3.63483 3.82995 3.86624 3.98594 4.07267 4.16811 4.30278 4.36282 4.41022 4.46635 4.57053 4.60977 4.62133 4.71416 4.74743 4.77160 4.84104 4.88141 4.94278 4.97405 5.04786 5.07189 5.10309 5.22163 5.24115 5.34490 5.35491 5.45072 5.57409 5.73462 5.96894 6.02710 6.12178 6.40736 6.53318 6.56056 6.83239 6.87997 6.99017 6.99449 8.29132 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016219 B = 0.007281 C = 0.005787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.903696 B = 3844.558035 C = 4837.266431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.092 3.908 3 C -0.128 4.128 4 C 0.083 3.917 5 N -0.611 5.611 6 C 0.169 3.831 7 C -0.168 4.168 8 C -0.084 4.084 9 C -0.215 4.215 10 C -0.107 4.107 11 C -0.215 4.215 12 C 0.072 3.928 13 C -0.470 4.470 14 H 0.055 0.945 15 C 0.070 3.930 16 N -0.852 5.852 17 Si 0.900 3.100 18 H -0.263 1.263 19 H -0.277 1.277 20 H -0.232 1.232 21 C 0.101 3.899 22 C -0.163 4.163 23 C 0.090 3.910 24 O -0.384 6.384 25 H 0.068 0.932 26 H 0.040 0.960 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.054 0.946 33 H 0.014 0.986 34 H 0.083 0.917 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.117 0.883 38 H 0.083 0.917 39 H 0.285 0.715 40 H 0.077 0.923 41 H 0.000 1.000 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.101 0.899 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.483 10.379 1.366 12.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.053 3.947 3 C -0.186 4.186 4 C -0.044 4.044 5 N -0.337 5.337 6 C 0.044 3.956 7 C -0.170 4.170 8 C -0.103 4.103 9 C -0.233 4.233 10 C -0.125 4.125 11 C -0.234 4.234 12 C 0.069 3.931 13 C -0.501 4.501 14 H 0.073 0.927 15 C -0.143 4.143 16 N -0.480 5.480 17 Si 0.722 3.278 18 H -0.189 1.189 19 H -0.203 1.203 20 H -0.155 1.155 21 C -0.024 4.024 22 C -0.201 4.201 23 C 0.012 3.988 24 O -0.303 6.303 25 H 0.087 0.913 26 H 0.059 0.941 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.072 0.928 33 H 0.033 0.967 34 H 0.101 0.899 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.135 0.865 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.018 0.982 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.119 0.881 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 7.711 10.181 1.560 12.867 hybrid contribution -0.894 -1.126 0.530 1.533 sum 6.817 9.055 2.090 11.525 Atomic orbital electron populations 1.22208 0.95690 1.01994 1.03200 1.22160 0.92934 0.94313 0.85309 1.22013 1.02347 0.90897 1.03342 1.21751 0.97952 0.87565 0.97127 1.53710 1.51899 1.17570 1.10564 1.20043 0.93192 0.94908 0.87465 1.20249 1.00803 0.96437 0.99524 1.20870 0.96566 0.98306 0.94536 1.20929 1.05507 0.93272 1.03639 1.20983 0.96603 0.97934 0.96998 1.21247 1.04880 0.98427 0.98861 1.17736 0.90898 0.92106 0.92328 1.18885 1.15970 1.02813 1.12394 0.92738 1.26289 0.97925 0.95997 0.94109 1.69826 1.28379 1.24134 1.25635 0.86352 0.82607 0.77785 0.81067 1.18850 1.20256 1.15456 1.21056 0.93830 0.96909 0.90587 1.22147 1.01252 1.00007 0.96743 1.21178 0.98193 0.83417 0.96014 1.85709 1.61996 1.35857 1.46759 0.91309 0.94108 0.90440 0.91534 0.91314 0.89400 0.89611 0.92801 0.96737 0.89924 0.85761 0.85650 0.86501 0.89859 0.90485 0.90464 0.98226 0.91612 0.91483 0.88119 0.95752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.86 7.80 71.75 0.56 -4.30 16 2 C 0.09 2.48 0.98 -11.37 -0.01 2.47 16 3 C -0.13 -2.49 8.56 72.43 0.62 -1.87 16 4 C 0.08 2.44 4.48 85.91 0.38 2.83 16 5 N -0.61 -22.68 3.45 -916.82 -3.16 -25.84 16 6 C 0.17 6.50 5.31 85.73 0.46 6.95 16 7 C -0.17 -7.26 5.33 -19.41 -0.10 -7.36 16 8 C -0.08 -3.21 9.65 22.22 0.21 -2.99 16 9 C -0.21 -8.03 10.05 22.46 0.23 -7.80 16 10 C -0.11 -4.36 10.02 22.22 0.22 -4.14 16 11 C -0.21 -10.13 6.78 22.73 0.15 -9.98 16 12 C 0.07 3.52 4.22 -21.29 -0.09 3.43 16 13 C -0.47 -24.96 5.79 23.46 0.14 -24.82 16 14 H 0.05 3.19 6.99 -2.91 -0.02 3.17 16 15 C 0.07 3.69 4.82 85.26 0.41 4.10 16 16 N -0.85 -46.47 13.93 21.83 0.30 -46.17 16 17 Si 0.90 41.44 24.87 68.60 1.71 43.15 16 18 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 20 H -0.23 -10.86 5.48 99.48 0.55 -10.31 16 21 C 0.10 4.22 3.30 85.41 0.28 4.50 16 22 C -0.16 -5.92 5.70 29.78 0.17 -5.75 16 23 C 0.09 2.79 5.79 72.26 0.42 3.21 16 24 O -0.38 -11.59 9.26 -82.18 -0.76 -12.35 16 25 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.04 1.41 4.52 -2.39 -0.01 1.40 16 27 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.09 1.37 8.07 -2.39 -0.02 1.35 16 31 H 0.09 2.12 6.93 -1.76 -0.01 2.11 16 32 H 0.05 1.65 8.19 -1.70 -0.01 1.63 16 33 H 0.01 0.63 6.68 -2.39 -0.02 0.61 16 34 H 0.08 2.62 7.09 -2.39 -0.02 2.60 16 35 H 0.12 3.92 8.05 -2.91 -0.02 3.89 16 36 H 0.13 3.85 8.06 -2.91 -0.02 3.82 16 37 H 0.12 4.08 8.06 -2.91 -0.02 4.06 16 38 H 0.08 4.02 6.76 -2.91 -0.02 4.00 16 39 H 0.28 14.31 8.30 -92.71 -0.77 13.55 16 40 H 0.08 3.67 2.44 -1.56 0.00 3.67 16 41 H 0.00 -0.01 5.98 -2.05 -0.01 -0.02 16 42 H 0.07 2.37 8.20 -1.99 -0.02 2.36 16 43 H 0.07 2.46 8.20 -2.01 -0.02 2.44 16 44 H 0.10 2.64 8.27 -1.57 -0.01 2.62 16 45 H 0.02 0.78 7.14 -2.35 -0.02 0.77 16 Total: -1.00 -58.54 330.29 2.97 -55.56 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 0.83 Total: 27.18 kcal Atomic # 6 Polarization: -45.58 SS G_CDS: 4.05 Total: -41.53 kcal Atomic # 7 Polarization: -69.15 SS G_CDS: -2.86 Total: -72.01 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -0.76 Total: -12.35 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 1.71 Total: 43.15 kcal Total: -58.54 2.97 -55.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235523850.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.879 kcal (2) G-P(sol) polarization free energy of solvation -58.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds