Wall clock time and date at job start Tue Mar 31 2020 06:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53007 * 109.46805 * 2 1 4 4 O 1.42899 * 109.52120 * 64.99763 * 3 2 1 5 5 C 1.53111 * 109.52008 * 304.86836 * 3 2 1 6 6 C 1.53050 * 109.27097 * 182.50459 * 5 3 2 7 7 N 1.46849 * 109.57238 * 59.08704 * 6 5 3 8 8 C 1.46907 * 110.99902 * 174.18761 * 7 6 5 9 9 C 1.50698 * 109.47052 * 307.47650 * 8 7 6 10 10 C 1.37639 * 120.12547 * 266.04853 * 9 8 7 11 11 C 1.38615 * 120.24892 * 179.70313 * 10 9 8 12 12 C 1.38649 * 120.49994 * 0.60067 * 11 10 9 13 13 C 1.37597 * 120.25077 * 359.67959 * 12 11 10 14 14 C 1.40692 * 120.13101 * 86.32640 * 9 8 7 15 15 C 1.41398 * 120.24664 * 0.02586 * 14 9 8 16 16 H 1.07998 * 119.99924 * 33.80463 * 15 14 9 17 17 C 1.39940 * 120.00114 * 213.81657 * 15 14 9 18 18 N 1.30823 * 119.99804 * 357.28439 * 17 15 14 19 19 Si 1.86797 * 119.99993 * 177.29109 * 17 15 14 20 20 H 1.48494 * 109.47229 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47110 * 119.99921 * 19 17 15 22 22 H 1.48507 * 109.46900 * 239.99283 * 19 17 15 23 23 C 1.46839 * 111.19842 * 298.28508 * 7 6 5 24 24 C 1.53045 * 109.52313 * 61.74614 * 23 7 6 25 25 H 1.08996 * 109.46567 * 60.00006 * 1 2 3 26 26 H 1.08991 * 109.47104 * 300.00491 * 1 2 3 27 27 H 1.08997 * 109.46787 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46769 * 119.99211 * 2 1 3 29 29 H 1.08991 * 109.47565 * 239.99777 * 2 1 3 30 30 H 0.96694 * 114.00553 * 299.99646 * 4 3 2 31 31 H 1.09003 * 109.50827 * 302.38255 * 5 3 2 32 32 H 1.09001 * 109.50470 * 62.50569 * 5 3 2 33 33 H 1.08995 * 109.41373 * 299.06806 * 6 5 3 34 34 H 1.08998 * 109.45956 * 179.12878 * 6 5 3 35 35 H 1.09006 * 109.46207 * 67.47126 * 8 7 6 36 36 H 1.08994 * 109.46727 * 187.46783 * 8 7 6 37 37 H 1.08006 * 119.87556 * 0.02562 * 10 9 8 38 38 H 1.07994 * 119.74757 * 180.30220 * 11 10 9 39 39 H 1.08005 * 119.87839 * 179.70110 * 12 11 10 40 40 H 1.08001 * 120.13318 * 180.02562 * 13 12 11 41 41 H 0.96999 * 119.99944 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.46864 * 301.73071 * 23 7 6 43 43 H 1.09003 * 109.45675 * 181.75010 * 23 7 6 44 44 H 1.08994 * 109.50378 * 180.87774 * 24 23 7 45 45 H 1.09000 * 109.50039 * 60.75712 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 1.6625 2.0825 1.2206 5 6 1.4327 2.1999 -1.1840 6 6 1.9945 3.6232 -1.2150 7 7 3.4568 3.5723 -1.3399 8 6 4.0178 4.9192 -1.5112 9 6 3.3152 5.6151 -2.6483 10 6 3.8435 5.5691 -3.9184 11 6 3.1961 6.2031 -4.9674 12 6 2.0178 6.9003 -4.7487 13 6 1.4745 6.9645 -3.4862 14 6 2.1197 6.3193 -2.4147 15 6 1.5710 6.3788 -1.1129 16 1 2.2232 6.4028 -0.2525 17 6 0.1826 6.4065 -0.9394 18 7 -0.6065 6.4310 -1.9825 19 14 -0.5437 6.4087 0.7816 20 1 0.5533 6.3777 1.7819 21 1 -1.3556 7.6371 0.9746 22 1 -1.4064 5.2127 0.9563 23 6 4.0646 2.8914 -0.1896 24 6 3.5658 1.4458 -0.1289 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5137 0.8901 29 1 1.8935 -0.5138 -0.8899 30 1 0.7073 2.1181 1.3671 31 1 1.6875 1.6887 -2.1124 32 1 0.3489 2.2378 -1.0744 33 1 1.7265 4.1387 -0.2928 34 1 1.5758 4.1604 -2.0660 35 1 3.8776 5.4904 -0.5934 36 1 5.0822 4.8438 -1.7333 37 1 4.7632 5.0325 -4.0994 38 1 3.6153 6.1577 -5.9616 39 1 1.5243 7.3947 -5.5724 40 1 0.5563 7.5078 -3.3180 41 1 -1.5688 6.4505 -1.8623 42 1 3.7869 3.4102 0.7279 43 1 5.1494 2.8970 -0.2960 44 1 4.0050 0.9453 0.7340 45 1 3.8551 0.9225 -1.0402 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235527074.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:34 Heat of formation + Delta-G solvation = -38.802131 kcal Electronic energy + Delta-G solvation = -24718.284042 eV Core-core repulsion = 21506.590068 eV Total energy + Delta-G solvation = -3211.693974 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.54399 -37.88583 -35.71877 -33.61639 -32.93539 -31.56263 -30.16711 -29.47866 -29.03248 -25.87640 -24.84184 -23.35150 -22.47382 -20.88807 -20.66883 -19.53059 -19.06715 -17.11037 -16.15042 -15.72210 -15.43695 -14.71610 -14.60224 -14.19303 -14.02092 -13.85802 -13.60900 -13.33538 -13.20171 -12.58681 -12.45727 -12.19410 -11.84359 -11.81532 -11.52734 -11.35884 -11.13263 -11.04119 -10.95067 -10.92217 -10.73950 -10.63955 -10.55500 -10.40764 -10.33662 -9.70431 -9.50444 -9.46994 -9.13482 -9.05266 -7.50076 -7.22689 -7.17863 -6.61043 -4.35223 2.76639 2.99790 3.07972 3.13292 3.22736 3.96902 4.46267 4.70057 4.81907 4.89395 5.00305 5.11942 5.34100 5.52438 5.59729 5.69345 5.73697 5.91979 5.93277 6.03091 6.04021 6.10401 6.14000 6.20750 6.26143 6.27773 6.35394 6.41832 6.49152 6.51119 6.59091 6.63057 6.79403 7.02635 7.15542 7.27965 7.29812 7.43586 7.66692 7.91138 7.93157 7.97024 8.01115 8.10676 8.13801 8.33937 8.67180 8.93918 8.98744 10.29166 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013407 B = 0.007476 C = 0.005737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.999139 B = 3744.438755 C = 4879.146987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.148 4.148 3 C 0.131 3.869 4 O -0.557 6.557 5 C -0.144 4.144 6 C 0.068 3.932 7 N -0.532 5.532 8 C 0.123 3.877 9 C -0.181 4.181 10 C -0.083 4.083 11 C -0.231 4.231 12 C -0.113 4.113 13 C -0.153 4.153 14 C 0.112 3.888 15 C -0.456 4.456 16 H 0.073 0.927 17 C 0.076 3.924 18 N -0.810 5.810 19 Si 0.900 3.100 20 H -0.262 1.262 21 H -0.276 1.276 22 H -0.274 1.274 23 C 0.056 3.944 24 C -0.095 4.095 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.369 0.631 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.100 0.900 35 H 0.033 0.967 36 H 0.054 0.946 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.128 0.872 41 H 0.275 0.725 42 H 0.036 0.964 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.721 -8.949 3.730 9.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.185 4.185 3 C 0.091 3.909 4 O -0.363 6.363 5 C -0.182 4.182 6 C -0.059 4.059 7 N -0.257 5.257 8 C -0.004 4.004 9 C -0.183 4.183 10 C -0.102 4.102 11 C -0.250 4.250 12 C -0.132 4.132 13 C -0.173 4.173 14 C 0.110 3.890 15 C -0.487 4.487 16 H 0.091 0.909 17 C -0.139 4.139 18 N -0.438 5.438 19 Si 0.725 3.275 20 H -0.185 1.185 21 H -0.201 1.201 22 H -0.199 1.199 23 C -0.072 4.072 24 C -0.133 4.133 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.216 0.784 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.118 0.882 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.145 0.855 41 H 0.086 0.914 42 H 0.054 0.946 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.237 -9.161 3.339 10.003 hybrid contribution -1.336 0.248 1.296 1.878 sum 0.902 -8.912 4.635 10.086 Atomic orbital electron populations 1.21860 0.95928 1.01630 1.02178 1.22197 0.96303 0.97713 1.02335 1.21293 0.95121 0.90010 0.84523 1.86523 1.27842 1.81384 1.40543 1.22394 0.99546 0.98312 0.97952 1.22257 0.86593 0.93634 1.03416 1.62129 1.06079 1.18663 1.38814 1.20595 0.96082 0.87291 0.96409 1.19617 1.00664 1.04623 0.93380 1.20370 0.98201 0.98795 0.92844 1.20433 0.99359 1.08152 0.97059 1.20765 0.95868 0.99817 0.96742 1.21580 1.01764 1.02032 0.91916 1.17485 0.89788 0.88135 0.93593 1.19427 0.91182 1.45139 0.92997 0.90894 1.25718 0.97340 0.92811 0.98020 1.69766 1.05034 1.38553 1.30402 0.86372 0.79583 0.78442 0.83088 1.18549 1.20142 1.19913 1.21936 0.98126 0.94071 0.93075 1.21514 0.92735 0.97541 1.01527 0.91849 0.92876 0.92797 0.91733 0.91226 0.78366 0.91267 0.91870 0.93422 0.88204 0.94848 0.92786 0.89380 0.89672 0.89614 0.85481 0.91353 0.94604 0.91964 0.91835 0.90424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.22 37.16 0.34 -1.42 16 2 C -0.15 -1.78 5.24 -26.72 -0.14 -1.92 16 3 C 0.13 1.94 0.74 -90.50 -0.07 1.87 16 4 O -0.56 -8.85 11.84 -35.23 -0.42 -9.26 16 5 C -0.14 -2.46 4.51 -26.65 -0.12 -2.58 16 6 C 0.07 1.41 3.72 -3.83 -0.01 1.40 16 7 N -0.53 -10.44 4.75 -236.10 -1.12 -11.56 16 8 C 0.12 2.56 5.04 -4.97 -0.03 2.54 16 9 C -0.18 -4.22 4.59 -103.92 -0.48 -4.70 16 10 C -0.08 -1.86 9.66 -39.66 -0.38 -2.25 16 11 C -0.23 -5.16 10.05 -39.29 -0.39 -5.55 16 12 C -0.11 -2.64 10.02 -39.66 -0.40 -3.04 16 13 C -0.15 -3.90 8.67 -38.87 -0.34 -4.23 16 14 C 0.11 2.84 4.24 -106.82 -0.45 2.38 16 15 C -0.46 -11.39 5.18 -37.74 -0.20 -11.59 16 16 H 0.07 1.84 6.50 -52.49 -0.34 1.50 16 17 C 0.08 1.83 5.37 -17.34 -0.09 1.74 16 18 N -0.81 -20.14 10.60 55.55 0.59 -19.55 16 19 Si 0.90 18.70 29.56 -169.99 -5.02 13.67 16 20 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 21 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 23 C 0.06 0.96 5.33 -3.83 -0.02 0.94 16 24 C -0.10 -1.41 5.11 -26.65 -0.14 -1.54 16 25 H 0.06 0.75 6.41 -51.93 -0.33 0.42 16 26 H 0.05 0.56 6.89 -51.93 -0.36 0.20 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.37 4.98 7.53 45.56 0.34 5.32 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.06 1.05 6.51 -51.93 -0.34 0.71 16 33 H 0.05 1.07 6.46 -51.93 -0.34 0.74 16 34 H 0.10 2.45 5.20 -51.93 -0.27 2.18 16 35 H 0.03 0.73 6.51 -51.93 -0.34 0.40 16 36 H 0.05 1.03 8.06 -51.93 -0.42 0.62 16 37 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 38 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 39 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 40 H 0.13 3.36 6.13 -52.49 -0.32 3.04 16 41 H 0.28 6.35 8.30 -40.82 -0.34 6.02 16 42 H 0.04 0.67 7.76 -51.93 -0.40 0.27 16 43 H 0.06 0.96 8.12 -51.93 -0.42 0.54 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 338.16 15.07 5.10 5.10 Total: -1.00 -26.23 338.16 -10.27 -36.50 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -6.47 Total: 13.08 kcal Atomic # 6 Polarization: -25.06 SS G_CDS: -2.91 Total: -27.97 kcal Atomic # 7 Polarization: -30.58 SS G_CDS: -0.53 Total: -31.11 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -0.42 Total: -9.26 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.02 Total: 13.67 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -26.23 -10.27 -36.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235527074.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.306 kcal (2) G-P(sol) polarization free energy of solvation -26.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds