Wall clock time and date at job start Tue Mar 31 2020 06:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53007 * 109.46805 * 2 1 4 4 O 1.42899 * 109.52120 * 64.99763 * 3 2 1 5 5 C 1.53111 * 109.52008 * 304.86836 * 3 2 1 6 6 C 1.53050 * 109.27097 * 182.50459 * 5 3 2 7 7 N 1.46849 * 109.57238 * 59.08704 * 6 5 3 8 8 C 1.46907 * 110.99902 * 174.18761 * 7 6 5 9 9 C 1.50698 * 109.47052 * 307.47650 * 8 7 6 10 10 C 1.37639 * 120.12547 * 266.04853 * 9 8 7 11 11 C 1.38615 * 120.24892 * 179.70313 * 10 9 8 12 12 C 1.38649 * 120.49994 * 0.60067 * 11 10 9 13 13 C 1.37597 * 120.25077 * 359.67959 * 12 11 10 14 14 C 1.40692 * 120.13101 * 86.32640 * 9 8 7 15 15 C 1.41398 * 120.24664 * 0.02586 * 14 9 8 16 16 H 1.07998 * 119.99924 * 33.80463 * 15 14 9 17 17 C 1.39940 * 120.00114 * 213.81657 * 15 14 9 18 18 N 1.30823 * 119.99804 * 357.28439 * 17 15 14 19 19 Si 1.86797 * 119.99993 * 177.29109 * 17 15 14 20 20 H 1.48494 * 109.47229 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47110 * 119.99921 * 19 17 15 22 22 H 1.48507 * 109.46900 * 239.99283 * 19 17 15 23 23 C 1.46839 * 111.19842 * 298.28508 * 7 6 5 24 24 C 1.53045 * 109.52313 * 61.74614 * 23 7 6 25 25 H 1.08996 * 109.46567 * 60.00006 * 1 2 3 26 26 H 1.08991 * 109.47104 * 300.00491 * 1 2 3 27 27 H 1.08997 * 109.46787 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46769 * 119.99211 * 2 1 3 29 29 H 1.08991 * 109.47565 * 239.99777 * 2 1 3 30 30 H 0.96694 * 114.00553 * 299.99646 * 4 3 2 31 31 H 1.09003 * 109.50827 * 302.38255 * 5 3 2 32 32 H 1.09001 * 109.50470 * 62.50569 * 5 3 2 33 33 H 1.08995 * 109.41373 * 299.06806 * 6 5 3 34 34 H 1.08998 * 109.45956 * 179.12878 * 6 5 3 35 35 H 1.09006 * 109.46207 * 67.47126 * 8 7 6 36 36 H 1.08994 * 109.46727 * 187.46783 * 8 7 6 37 37 H 1.08006 * 119.87556 * 0.02562 * 10 9 8 38 38 H 1.07994 * 119.74757 * 180.30220 * 11 10 9 39 39 H 1.08005 * 119.87839 * 179.70110 * 12 11 10 40 40 H 1.08001 * 120.13318 * 180.02562 * 13 12 11 41 41 H 0.96999 * 119.99944 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.46864 * 301.73071 * 23 7 6 43 43 H 1.09003 * 109.45675 * 181.75010 * 23 7 6 44 44 H 1.08994 * 109.50378 * 180.87774 * 24 23 7 45 45 H 1.09000 * 109.50039 * 60.75712 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 1.6625 2.0825 1.2206 5 6 1.4327 2.1999 -1.1840 6 6 1.9945 3.6232 -1.2150 7 7 3.4568 3.5723 -1.3399 8 6 4.0178 4.9192 -1.5112 9 6 3.3152 5.6151 -2.6483 10 6 3.8435 5.5691 -3.9184 11 6 3.1961 6.2031 -4.9674 12 6 2.0178 6.9003 -4.7487 13 6 1.4745 6.9645 -3.4862 14 6 2.1197 6.3193 -2.4147 15 6 1.5710 6.3788 -1.1129 16 1 2.2232 6.4028 -0.2525 17 6 0.1826 6.4065 -0.9394 18 7 -0.6065 6.4310 -1.9825 19 14 -0.5437 6.4087 0.7816 20 1 0.5533 6.3777 1.7819 21 1 -1.3556 7.6371 0.9746 22 1 -1.4064 5.2127 0.9563 23 6 4.0646 2.8914 -0.1896 24 6 3.5658 1.4458 -0.1289 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5137 0.8901 29 1 1.8935 -0.5138 -0.8899 30 1 0.7073 2.1181 1.3671 31 1 1.6875 1.6887 -2.1124 32 1 0.3489 2.2378 -1.0744 33 1 1.7265 4.1387 -0.2928 34 1 1.5758 4.1604 -2.0660 35 1 3.8776 5.4904 -0.5934 36 1 5.0822 4.8438 -1.7333 37 1 4.7632 5.0325 -4.0994 38 1 3.6153 6.1577 -5.9616 39 1 1.5243 7.3947 -5.5724 40 1 0.5563 7.5078 -3.3180 41 1 -1.5688 6.4505 -1.8623 42 1 3.7869 3.4102 0.7279 43 1 5.1494 2.8970 -0.2960 44 1 4.0050 0.9453 0.7340 45 1 3.8551 0.9225 -1.0402 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235527074.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:33 Heat of formation + Delta-G solvation = -53.977300 kcal Electronic energy + Delta-G solvation = -24718.942087 eV Core-core repulsion = 21506.590068 eV Total energy + Delta-G solvation = -3212.352019 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.92695 -39.54626 -37.20747 -35.47080 -34.11473 -32.97988 -31.65159 -31.24995 -30.55774 -27.56066 -26.41045 -24.76575 -23.91484 -22.67778 -21.96894 -21.09173 -20.55538 -18.97451 -17.47377 -17.20312 -17.06564 -16.32222 -16.04714 -15.66904 -15.47463 -15.31831 -15.04476 -14.83810 -14.67403 -14.37059 -13.65169 -13.57867 -13.38117 -13.26797 -12.93869 -12.85794 -12.75567 -12.62453 -12.47481 -12.29854 -12.23855 -12.08546 -12.00344 -11.90682 -11.82251 -11.32207 -11.15940 -10.96435 -10.93961 -10.46759 -9.25036 -9.05564 -8.93194 -8.45574 -6.26693 0.98080 1.16545 1.34357 1.43848 1.48978 2.21361 2.85122 3.19014 3.42126 3.75876 3.83688 3.90317 3.97742 4.26543 4.32772 4.44064 4.47154 4.52906 4.58762 4.65020 4.68053 4.74934 4.75466 4.77825 4.87855 4.99232 5.03568 5.04911 5.06803 5.13278 5.19661 5.27476 5.30818 5.42802 5.44572 5.46522 5.55633 5.59154 5.81247 6.08315 6.19354 6.23933 6.33729 6.46177 6.51309 6.78729 6.82511 7.04944 7.11385 8.46367 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013407 B = 0.007476 C = 0.005737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.999139 B = 3744.438755 C = 4879.146987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.139 4.139 3 C 0.133 3.867 4 O -0.572 6.572 5 C -0.139 4.139 6 C 0.082 3.918 7 N -0.530 5.530 8 C 0.127 3.873 9 C -0.188 4.188 10 C -0.089 4.089 11 C -0.229 4.229 12 C -0.120 4.120 13 C -0.181 4.181 14 C 0.090 3.910 15 C -0.469 4.469 16 H 0.059 0.941 17 C 0.045 3.955 18 N -0.836 5.836 19 Si 0.955 3.045 20 H -0.269 1.269 21 H -0.270 1.270 22 H -0.261 1.261 23 C 0.055 3.945 24 C -0.094 4.094 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.378 0.622 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.022 0.978 34 H 0.057 0.943 35 H 0.014 0.986 36 H 0.075 0.925 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.280 0.720 42 H 0.015 0.985 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.542 -11.092 3.971 12.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.176 4.176 3 C 0.092 3.908 4 O -0.380 6.380 5 C -0.177 4.177 6 C -0.046 4.046 7 N -0.255 5.255 8 C 0.000 4.000 9 C -0.189 4.189 10 C -0.108 4.108 11 C -0.248 4.248 12 C -0.139 4.139 13 C -0.201 4.201 14 C 0.088 3.912 15 C -0.501 4.501 16 H 0.077 0.923 17 C -0.168 4.168 18 N -0.464 5.464 19 Si 0.778 3.222 20 H -0.193 1.193 21 H -0.195 1.195 22 H -0.186 1.186 23 C -0.073 4.073 24 C -0.131 4.131 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.226 0.774 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.040 0.960 34 H 0.075 0.925 35 H 0.032 0.968 36 H 0.093 0.907 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.091 0.909 42 H 0.034 0.966 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.057 -11.308 3.572 12.246 hybrid contribution -1.525 0.941 1.150 2.129 sum 1.532 -10.366 4.722 11.493 Atomic orbital electron populations 1.21864 0.95374 1.02654 1.01754 1.22107 0.96758 0.95415 1.03362 1.21324 0.95199 0.91301 0.82939 1.86502 1.28817 1.81842 1.40825 1.22341 0.99566 0.96311 0.99441 1.21910 0.87356 0.95220 1.00098 1.62164 1.05449 1.17706 1.40149 1.20559 0.96984 0.87732 0.94747 1.19928 1.00068 1.04161 0.94761 1.20706 0.99046 0.98680 0.92376 1.20794 0.98643 1.06860 0.98508 1.21013 0.96430 0.99966 0.96471 1.21545 1.01893 1.03363 0.93290 1.17733 0.90878 0.88818 0.93772 1.19380 0.91694 1.46383 0.92596 0.92299 1.26299 0.97265 0.92160 1.01039 1.69837 1.05396 1.39211 1.31959 0.85543 0.78703 0.78979 0.78967 1.19300 1.19523 1.18566 1.22043 0.99160 0.95088 0.90969 1.21563 0.92635 0.95882 1.03046 0.93034 0.92591 0.91055 0.90539 0.90270 0.77384 0.91160 0.91914 0.96005 0.92451 0.96824 0.90655 0.86770 0.86663 0.87689 0.87446 0.90908 0.96631 0.90038 0.89821 0.89193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.16 9.22 71.98 0.66 -2.49 16 2 C -0.14 -2.93 5.24 30.60 0.16 -2.77 16 3 C 0.13 3.68 0.74 -10.71 -0.01 3.67 16 4 O -0.57 -17.44 11.84 -148.98 -1.76 -19.21 16 5 C -0.14 -4.67 4.51 30.65 0.14 -4.53 16 6 C 0.08 3.46 3.72 86.33 0.32 3.78 16 7 N -0.53 -20.60 4.75 -900.89 -4.28 -24.88 16 8 C 0.13 5.30 5.04 85.55 0.43 5.73 16 9 C -0.19 -8.84 4.59 -19.41 -0.09 -8.92 16 10 C -0.09 -3.89 9.66 22.22 0.21 -3.68 16 11 C -0.23 -9.89 10.05 22.46 0.23 -9.67 16 12 C -0.12 -5.62 10.02 22.22 0.22 -5.40 16 13 C -0.18 -9.53 8.67 22.73 0.20 -9.33 16 14 C 0.09 4.72 4.24 -21.29 -0.09 4.63 16 15 C -0.47 -24.55 5.18 23.46 0.12 -24.42 16 16 H 0.06 3.15 6.50 -2.91 -0.02 3.13 16 17 C 0.04 2.23 5.37 85.26 0.46 2.69 16 18 N -0.84 -43.15 10.60 21.82 0.23 -42.92 16 19 Si 0.96 39.32 29.56 68.60 2.03 41.35 16 20 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 21 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 22 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 23 C 0.06 1.81 5.33 86.33 0.46 2.27 16 24 C -0.09 -2.52 5.11 30.65 0.16 -2.36 16 25 H 0.05 1.14 6.41 -2.39 -0.02 1.12 16 26 H 0.06 1.06 6.89 -2.39 -0.02 1.05 16 27 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 29 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.38 9.77 7.53 -74.06 -0.56 9.21 16 31 H 0.07 2.33 8.14 -2.39 -0.02 2.32 16 32 H 0.06 2.09 6.51 -2.39 -0.02 2.07 16 33 H 0.02 1.02 6.46 -2.39 -0.02 1.00 16 34 H 0.06 2.92 5.20 -2.39 -0.01 2.91 16 35 H 0.01 0.62 6.51 -2.38 -0.02 0.60 16 36 H 0.08 2.79 8.06 -2.39 -0.02 2.77 16 37 H 0.11 4.32 8.06 -2.91 -0.02 4.30 16 38 H 0.12 4.25 8.06 -2.91 -0.02 4.22 16 39 H 0.11 4.37 8.06 -2.91 -0.02 4.35 16 40 H 0.11 5.98 6.13 -2.91 -0.02 5.97 16 41 H 0.28 13.33 8.30 -92.71 -0.77 12.56 16 42 H 0.02 0.57 7.76 -2.39 -0.02 0.55 16 43 H 0.08 2.33 8.12 -2.39 -0.02 2.31 16 44 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -58.03 338.16 0.22 -57.81 By element: Atomic # 1 Polarization: 38.22 SS G_CDS: 0.42 Total: 38.64 kcal Atomic # 6 Polarization: -54.38 SS G_CDS: 3.58 Total: -50.80 kcal Atomic # 7 Polarization: -63.75 SS G_CDS: -4.05 Total: -67.80 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -1.76 Total: -19.21 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.35 kcal Total: -58.03 0.22 -57.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235527074.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.834 kcal (2) G-P(sol) polarization free energy of solvation -58.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds