Wall clock time and date at job start Tue Mar 31 2020 06:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50704 * 120.00043 * 2 1 4 4 C 1.53003 * 109.47099 * 124.99866 * 3 2 1 5 5 C 1.52998 * 109.46832 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.47653 * 54.99673 * 5 4 3 7 7 O 1.42899 * 109.47296 * 295.00125 * 5 4 3 8 8 C 1.52997 * 109.46964 * 175.00137 * 5 4 3 9 9 N 1.46905 * 109.47484 * 184.98962 * 8 5 4 10 10 C 1.46899 * 110.99517 * 286.85311 * 9 8 5 11 11 C 1.50701 * 109.47181 * 299.43181 * 10 9 8 12 12 H 1.07995 * 120.00054 * 4.80782 * 11 10 9 13 13 C 1.37877 * 119.99854 * 184.81343 * 11 10 9 14 14 N 1.31513 * 120.00073 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99962 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46826 * 60.00432 * 15 13 11 17 17 H 1.48498 * 109.47114 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47544 * 300.00438 * 15 13 11 19 19 C 1.46891 * 111.00466 * 162.89791 * 9 8 5 20 20 C 1.50693 * 109.47282 * 190.00097 * 19 9 8 21 21 C 1.38234 * 120.00248 * 90.00248 * 20 19 9 22 22 C 1.38237 * 120.00290 * 179.97438 * 21 20 19 23 23 C 1.38237 * 119.99834 * 0.06060 * 22 21 20 24 24 C 1.38229 * 119.99979 * 359.91376 * 23 22 21 25 25 C 1.38237 * 120.00343 * 0.04682 * 24 23 22 26 26 H 1.08002 * 120.00024 * 0.02562 * 1 2 3 27 27 H 1.07995 * 119.99457 * 179.97438 * 1 2 3 28 28 H 1.07996 * 120.00439 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.46876 * 4.99712 * 3 2 1 30 30 H 1.09002 * 109.47221 * 245.00157 * 3 2 1 31 31 H 1.08996 * 109.46962 * 60.00364 * 4 3 2 32 32 H 1.08997 * 109.46911 * 300.00041 * 4 3 2 33 33 H 0.96701 * 113.99927 * 299.99867 * 7 5 4 34 34 H 1.08996 * 109.47551 * 64.98993 * 8 5 4 35 35 H 1.09004 * 109.47425 * 304.98733 * 8 5 4 36 36 H 1.08995 * 109.47229 * 59.43465 * 10 9 8 37 37 H 1.09004 * 109.46760 * 179.42908 * 10 9 8 38 38 H 0.97000 * 119.99805 * 179.97438 * 14 13 11 39 39 H 1.08997 * 109.47479 * 69.99696 * 19 9 8 40 40 H 1.09006 * 109.47199 * 310.00224 * 19 9 8 41 41 H 1.08004 * 120.00120 * 359.69603 * 21 20 19 42 42 H 1.08003 * 120.00226 * 179.97438 * 22 21 20 43 43 H 1.08002 * 119.99740 * 180.02562 * 23 22 21 44 44 H 1.07997 * 120.00014 * 180.02562 * 24 23 22 45 45 H 1.07996 * 120.00303 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1817 5 6 3.7996 2.6584 1.1820 6 1 3.0911 3.4867 1.1821 7 8 4.6211 2.7347 0.0152 8 6 4.6792 2.7394 2.4312 9 7 5.3212 4.0593 2.4934 10 6 6.3884 4.1732 1.4904 11 6 7.4386 3.1248 1.7530 12 1 7.2881 2.3931 2.5329 13 6 8.5917 3.0998 0.9975 14 7 8.7754 3.9911 0.0481 15 14 9.8939 1.8007 1.3235 16 1 9.3066 0.4510 1.1265 17 1 11.0278 1.9897 0.3834 18 1 10.3825 1.9289 2.7198 19 6 5.8352 4.3318 3.8422 20 6 6.2620 5.7740 3.9353 21 6 5.3565 6.7383 4.3365 22 6 5.7482 8.0612 4.4224 23 6 7.0452 8.4200 4.1058 24 6 7.9508 7.4556 3.7051 25 6 7.5594 6.1326 3.6200 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5399 -0.9353 -0.0004 28 1 1.8501 -0.9352 -0.0004 29 1 1.3586 2.1316 0.0895 30 1 2.6213 1.4027 -0.9314 31 1 3.7400 0.5066 1.0921 32 1 2.4772 1.2356 2.1130 33 1 5.2768 2.0271 -0.0511 34 1 5.4447 1.9648 2.3875 35 1 4.0640 2.5925 3.3190 36 1 5.9689 4.0260 0.4952 37 1 6.8401 5.1634 1.5514 38 1 9.5868 3.9737 -0.4831 39 1 6.6902 3.6861 4.0426 40 1 5.0527 4.1364 4.5755 41 1 4.3418 6.4589 4.5786 42 1 5.0407 8.8147 4.7355 43 1 7.3513 9.4535 4.1733 44 1 8.9641 7.7358 3.4582 45 1 8.2670 5.3791 3.3073 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252589675.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:40 Heat of formation + Delta-G solvation = -12.244362 kcal Electronic energy + Delta-G solvation = -23268.714290 eV Core-core repulsion = 20058.171947 eV Total energy + Delta-G solvation = -3210.542343 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.92423 -37.92496 -35.81831 -34.62930 -32.50603 -31.31900 -30.61122 -30.28333 -27.70800 -26.66779 -24.48650 -23.26399 -21.92464 -21.45102 -20.61286 -19.81063 -19.47412 -16.68383 -16.04078 -15.59796 -15.56283 -15.22170 -14.74992 -14.63851 -14.44136 -14.32638 -13.79019 -13.34742 -12.94370 -12.79427 -12.73914 -12.31085 -12.20255 -12.01357 -11.65670 -11.38106 -11.05868 -11.03723 -10.98994 -10.80431 -10.67185 -10.50935 -10.35811 -10.24951 -10.22979 -9.86093 -9.55186 -9.37519 -8.90725 -8.36640 -8.18079 -8.12339 -7.07145 -5.97523 -4.05980 1.94747 2.01758 2.27241 3.25487 3.32600 3.34134 4.33405 4.40332 4.74626 5.01544 5.14261 5.19270 5.31038 5.38605 5.41008 5.44861 5.51621 5.56544 5.68479 5.79409 5.81284 5.87427 5.95850 6.04961 6.09146 6.12295 6.16977 6.28187 6.35788 6.37097 6.45166 6.62634 6.64541 6.73807 6.77895 6.84974 7.00321 7.12797 7.36375 7.43782 7.63223 7.67635 8.08594 8.16275 8.36888 8.41004 8.46900 9.07201 9.58306 11.06150 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.011221 B = 0.005286 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2494.709596 B = 5296.183795 C = 7248.759424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.145 4.145 3 C -0.091 4.091 4 C -0.145 4.145 5 C 0.119 3.881 6 H 0.092 0.908 7 O -0.546 6.546 8 C 0.027 3.973 9 N -0.530 5.530 10 C 0.165 3.835 11 C -0.546 4.546 12 H 0.050 0.950 13 C 0.069 3.931 14 N -0.883 5.883 15 Si 0.878 3.122 16 H -0.279 1.279 17 H -0.288 1.288 18 H -0.279 1.279 19 C 0.094 3.906 20 C -0.058 4.058 21 C -0.109 4.109 22 C -0.135 4.135 23 C -0.132 4.132 24 C -0.127 4.127 25 C -0.088 4.088 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.105 0.895 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.376 0.624 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.068 0.932 37 H 0.034 0.966 38 H 0.261 0.739 39 H 0.049 0.951 40 H 0.055 0.945 41 H 0.114 0.886 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.114 0.886 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.821 -1.126 5.206 11.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.163 4.163 3 C -0.128 4.128 4 C -0.183 4.183 5 C 0.059 3.941 6 H 0.110 0.890 7 O -0.351 6.351 8 C -0.102 4.102 9 N -0.253 5.253 10 C 0.040 3.960 11 C -0.585 4.585 12 H 0.068 0.932 13 C -0.134 4.134 14 N -0.521 5.521 15 Si 0.706 3.294 16 H -0.205 1.205 17 H -0.213 1.213 18 H -0.205 1.205 19 C -0.034 4.034 20 C -0.058 4.058 21 C -0.128 4.128 22 C -0.153 4.153 23 C -0.151 4.151 24 C -0.145 4.145 25 C -0.107 4.107 26 H 0.113 0.887 27 H 0.110 0.890 28 H 0.123 0.877 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.224 0.776 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.052 0.948 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.132 0.868 42 H 0.129 0.871 43 H 0.129 0.871 44 H 0.132 0.868 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.416 -0.183 4.836 11.485 hybrid contribution 1.856 -1.914 0.473 2.708 sum -8.559 -2.097 5.308 10.288 Atomic orbital electron populations 1.23794 0.96017 1.01488 1.03124 1.23099 0.96018 0.98940 0.98227 1.20719 0.97927 0.94464 0.99728 1.22242 0.98557 0.99286 0.98205 1.21784 0.91396 0.95463 0.85485 0.88977 1.86566 1.50849 1.54628 1.43090 1.22655 0.97435 0.93045 0.97067 1.62599 1.32459 1.26431 1.03836 1.20272 0.86868 0.96672 0.92177 1.21663 1.03861 1.15158 1.17843 0.93189 1.24877 0.97800 0.95470 0.95205 1.69947 1.26818 1.34507 1.20844 0.86899 0.81917 0.82553 0.78014 1.20488 1.21336 1.20526 1.20923 0.98326 0.91927 0.92204 1.19813 0.93267 0.95688 0.97049 1.20943 0.98767 0.92711 1.00388 1.20964 0.96110 0.96029 1.02195 1.20989 0.94075 0.98698 1.01297 1.21106 0.99372 0.93478 1.00563 1.21359 0.96525 0.96389 0.96388 0.88715 0.88959 0.87697 0.91710 0.90147 0.91740 0.91635 0.77616 0.93152 0.92812 0.91425 0.94791 0.92925 0.93242 0.92665 0.86817 0.87057 0.87125 0.86798 0.84931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.09 14.32 29.01 0.42 -1.67 16 2 C -0.14 -1.60 9.52 -36.02 -0.34 -1.94 16 3 C -0.09 -1.12 5.55 -27.88 -0.15 -1.27 16 4 C -0.14 -1.88 4.88 -26.73 -0.13 -2.01 16 5 C 0.12 1.92 3.18 -26.73 -0.09 1.83 16 6 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 7 O -0.55 -10.33 9.78 -35.23 -0.34 -10.68 16 8 C 0.03 0.48 4.62 -3.82 -0.02 0.46 16 9 N -0.53 -10.85 4.65 -237.52 -1.10 -11.95 16 10 C 0.17 4.02 4.43 -4.98 -0.02 4.00 16 11 C -0.55 -13.81 7.15 -34.44 -0.25 -14.06 16 12 H 0.05 1.27 5.96 -52.49 -0.31 0.95 16 13 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 14 N -0.88 -24.91 13.29 55.43 0.74 -24.17 16 15 Si 0.88 20.51 29.54 -169.99 -5.02 15.49 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 C 0.09 1.80 4.93 -4.98 -0.02 1.78 16 20 C -0.06 -1.10 4.89 -104.63 -0.51 -1.61 16 21 C -0.11 -1.85 9.70 -39.58 -0.38 -2.23 16 22 C -0.13 -2.09 10.05 -39.58 -0.40 -2.48 16 23 C -0.13 -2.08 10.05 -39.59 -0.40 -2.48 16 24 C -0.13 -2.25 10.05 -39.59 -0.40 -2.64 16 25 C -0.09 -1.76 7.91 -39.58 -0.31 -2.08 16 26 H 0.09 0.91 7.84 -52.49 -0.41 0.50 16 27 H 0.09 0.80 8.06 -52.49 -0.42 0.38 16 28 H 0.11 1.08 8.06 -52.49 -0.42 0.66 16 29 H 0.06 0.78 7.79 -51.93 -0.40 0.38 16 30 H 0.08 1.07 7.82 -51.93 -0.41 0.66 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.38 6.87 9.05 45.56 0.41 7.28 16 34 H 0.05 0.98 6.10 -51.93 -0.32 0.66 16 35 H 0.05 0.85 7.79 -51.93 -0.40 0.44 16 36 H 0.07 1.80 5.26 -51.93 -0.27 1.52 16 37 H 0.03 0.93 5.93 -51.93 -0.31 0.62 16 38 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.05 1.03 6.56 -51.93 -0.34 0.69 16 40 H 0.05 0.93 7.79 -51.93 -0.40 0.53 16 41 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 42 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 43 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 44 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 45 H 0.13 2.96 7.82 -52.49 -0.41 2.55 16 LS Contribution 362.07 15.07 5.46 5.46 Total: -1.00 -27.99 362.07 -9.91 -37.90 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -6.52 Total: 12.62 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: -3.11 Total: -24.67 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: -0.37 Total: -36.12 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: -0.34 Total: -10.68 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -27.99 -9.91 -37.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252589675.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.653 kcal (2) G-P(sol) polarization free energy of solvation -27.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds