Wall clock time and date at job start Tue Mar 31 2020 06:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50704 * 120.00043 * 2 1 4 4 C 1.53003 * 109.47099 * 124.99866 * 3 2 1 5 5 C 1.52998 * 109.46832 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.47653 * 54.99673 * 5 4 3 7 7 O 1.42899 * 109.47296 * 295.00125 * 5 4 3 8 8 C 1.52997 * 109.46964 * 175.00137 * 5 4 3 9 9 N 1.46905 * 109.47484 * 184.98962 * 8 5 4 10 10 C 1.46899 * 110.99517 * 286.85311 * 9 8 5 11 11 C 1.50701 * 109.47181 * 299.43181 * 10 9 8 12 12 H 1.07995 * 120.00054 * 4.80782 * 11 10 9 13 13 C 1.37877 * 119.99854 * 184.81343 * 11 10 9 14 14 N 1.31513 * 120.00073 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99962 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46826 * 60.00432 * 15 13 11 17 17 H 1.48498 * 109.47114 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47544 * 300.00438 * 15 13 11 19 19 C 1.46891 * 111.00466 * 162.89791 * 9 8 5 20 20 C 1.50693 * 109.47282 * 190.00097 * 19 9 8 21 21 C 1.38234 * 120.00248 * 90.00248 * 20 19 9 22 22 C 1.38237 * 120.00290 * 179.97438 * 21 20 19 23 23 C 1.38237 * 119.99834 * 0.06060 * 22 21 20 24 24 C 1.38229 * 119.99979 * 359.91376 * 23 22 21 25 25 C 1.38237 * 120.00343 * 0.04682 * 24 23 22 26 26 H 1.08002 * 120.00024 * 0.02562 * 1 2 3 27 27 H 1.07995 * 119.99457 * 179.97438 * 1 2 3 28 28 H 1.07996 * 120.00439 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.46876 * 4.99712 * 3 2 1 30 30 H 1.09002 * 109.47221 * 245.00157 * 3 2 1 31 31 H 1.08996 * 109.46962 * 60.00364 * 4 3 2 32 32 H 1.08997 * 109.46911 * 300.00041 * 4 3 2 33 33 H 0.96701 * 113.99927 * 299.99867 * 7 5 4 34 34 H 1.08996 * 109.47551 * 64.98993 * 8 5 4 35 35 H 1.09004 * 109.47425 * 304.98733 * 8 5 4 36 36 H 1.08995 * 109.47229 * 59.43465 * 10 9 8 37 37 H 1.09004 * 109.46760 * 179.42908 * 10 9 8 38 38 H 0.97000 * 119.99805 * 179.97438 * 14 13 11 39 39 H 1.08997 * 109.47479 * 69.99696 * 19 9 8 40 40 H 1.09006 * 109.47199 * 310.00224 * 19 9 8 41 41 H 1.08004 * 120.00120 * 359.69603 * 21 20 19 42 42 H 1.08003 * 120.00226 * 179.97438 * 22 21 20 43 43 H 1.08002 * 119.99740 * 180.02562 * 23 22 21 44 44 H 1.07997 * 120.00014 * 180.02562 * 24 23 22 45 45 H 1.07996 * 120.00303 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1817 5 6 3.7996 2.6584 1.1820 6 1 3.0911 3.4867 1.1821 7 8 4.6211 2.7347 0.0152 8 6 4.6792 2.7394 2.4312 9 7 5.3212 4.0593 2.4934 10 6 6.3884 4.1732 1.4904 11 6 7.4386 3.1248 1.7530 12 1 7.2881 2.3931 2.5329 13 6 8.5917 3.0998 0.9975 14 7 8.7754 3.9911 0.0481 15 14 9.8939 1.8007 1.3235 16 1 9.3066 0.4510 1.1265 17 1 11.0278 1.9897 0.3834 18 1 10.3825 1.9289 2.7198 19 6 5.8352 4.3318 3.8422 20 6 6.2620 5.7740 3.9353 21 6 5.3565 6.7383 4.3365 22 6 5.7482 8.0612 4.4224 23 6 7.0452 8.4200 4.1058 24 6 7.9508 7.4556 3.7051 25 6 7.5594 6.1326 3.6200 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5399 -0.9353 -0.0004 28 1 1.8501 -0.9352 -0.0004 29 1 1.3586 2.1316 0.0895 30 1 2.6213 1.4027 -0.9314 31 1 3.7400 0.5066 1.0921 32 1 2.4772 1.2356 2.1130 33 1 5.2768 2.0271 -0.0511 34 1 5.4447 1.9648 2.3875 35 1 4.0640 2.5925 3.3190 36 1 5.9689 4.0260 0.4952 37 1 6.8401 5.1634 1.5514 38 1 9.5868 3.9737 -0.4831 39 1 6.6902 3.6861 4.0426 40 1 5.0527 4.1364 4.5755 41 1 4.3418 6.4589 4.5786 42 1 5.0407 8.8147 4.7355 43 1 7.3513 9.4535 4.1733 44 1 8.9641 7.7358 3.4582 45 1 8.2670 5.3791 3.3073 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252589675.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:39 Heat of formation + Delta-G solvation = -28.527929 kcal Electronic energy + Delta-G solvation = -23269.420399 eV Core-core repulsion = 20058.171947 eV Total energy + Delta-G solvation = -3211.248451 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.36259 -39.29504 -37.20688 -35.79100 -34.50594 -32.64694 -31.89653 -31.61983 -29.29135 -28.24005 -26.09299 -24.76980 -23.27405 -22.79704 -21.96325 -21.26391 -20.52064 -18.56542 -17.43669 -17.02825 -16.99104 -16.59192 -16.19726 -16.10803 -15.87621 -15.79542 -15.08974 -14.76333 -14.30520 -14.19907 -14.12610 -13.75866 -13.52201 -13.33054 -13.12410 -12.84124 -12.80354 -12.67888 -12.48416 -12.16804 -12.09827 -11.86782 -11.75999 -11.71242 -11.64539 -11.53411 -11.37803 -10.69411 -10.29195 -10.01577 -9.64018 -9.51671 -8.82376 -8.01375 -6.17747 0.59584 0.65339 1.36840 1.38812 1.44944 1.45529 2.41752 2.95705 3.22995 3.49372 3.75202 3.99398 4.08489 4.14204 4.16673 4.28843 4.32768 4.39813 4.41418 4.50931 4.57785 4.67190 4.73927 4.77484 4.82596 4.87326 4.95490 4.99677 5.04269 5.16176 5.27960 5.32035 5.35092 5.47175 5.51899 5.61699 5.69788 5.75505 5.79862 5.94278 5.95640 6.04914 6.23281 6.28049 6.41993 6.68632 7.01389 7.05563 7.50277 8.99234 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.011221 B = 0.005286 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2494.709596 B = 5296.183795 C = 7248.759424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.161 4.161 3 C -0.087 4.087 4 C -0.132 4.132 5 C 0.120 3.880 6 H 0.088 0.912 7 O -0.566 6.566 8 C 0.028 3.972 9 N -0.531 5.531 10 C 0.186 3.814 11 C -0.534 4.534 12 H 0.049 0.951 13 C 0.022 3.978 14 N -0.920 5.920 15 Si 0.938 3.062 16 H -0.269 1.269 17 H -0.289 1.289 18 H -0.279 1.279 19 C 0.097 3.903 20 C -0.078 4.078 21 C -0.112 4.112 22 C -0.128 4.128 23 C -0.128 4.128 24 C -0.140 4.140 25 C -0.117 4.117 26 H 0.098 0.902 27 H 0.108 0.892 28 H 0.111 0.889 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.375 0.625 34 H 0.032 0.968 35 H 0.082 0.918 36 H 0.046 0.954 37 H 0.000 1.000 38 H 0.259 0.741 39 H 0.023 0.977 40 H 0.085 0.915 41 H 0.136 0.864 42 H 0.151 0.849 43 H 0.145 0.855 44 H 0.121 0.879 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.842 -1.075 6.705 13.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.179 4.179 3 C -0.124 4.124 4 C -0.170 4.170 5 C 0.061 3.939 6 H 0.106 0.894 7 O -0.372 6.372 8 C -0.101 4.101 9 N -0.254 5.254 10 C 0.060 3.940 11 C -0.574 4.574 12 H 0.067 0.933 13 C -0.178 4.178 14 N -0.560 5.560 15 Si 0.765 3.235 16 H -0.194 1.194 17 H -0.215 1.215 18 H -0.205 1.205 19 C -0.030 4.030 20 C -0.079 4.079 21 C -0.131 4.131 22 C -0.145 4.145 23 C -0.146 4.146 24 C -0.159 4.159 25 C -0.136 4.136 26 H 0.117 0.883 27 H 0.127 0.873 28 H 0.129 0.871 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.222 0.778 34 H 0.050 0.950 35 H 0.100 0.900 36 H 0.063 0.937 37 H 0.018 0.982 38 H 0.068 0.932 39 H 0.041 0.959 40 H 0.103 0.897 41 H 0.154 0.846 42 H 0.168 0.832 43 H 0.163 0.837 44 H 0.139 0.861 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.454 -0.150 6.353 13.981 hybrid contribution 2.400 -1.851 0.061 3.031 sum -10.053 -2.001 6.413 12.092 Atomic orbital electron populations 1.23998 0.95717 1.02506 1.01093 1.23054 0.96432 0.98379 1.00023 1.20633 0.97690 0.95522 0.98557 1.22098 0.98412 0.97038 0.99431 1.21862 0.90840 0.97297 0.83877 0.89363 1.86541 1.51270 1.54974 1.44403 1.22755 0.97270 0.90889 0.99138 1.62527 1.30886 1.28203 1.03797 1.19817 0.87353 0.94477 0.92332 1.21803 1.03946 1.14738 1.16898 0.93304 1.25548 0.99820 0.97258 0.95138 1.70080 1.27367 1.36421 1.22158 0.85934 0.79453 0.80607 0.77554 1.19374 1.21524 1.20459 1.20941 0.98186 0.91995 0.91904 1.19888 0.93394 0.96193 0.98381 1.21219 0.99239 0.92959 0.99665 1.21433 0.96569 0.96220 1.00318 1.21381 0.93824 0.99768 0.99618 1.21294 1.00526 0.93053 1.00978 1.21169 0.96765 0.96787 0.98836 0.88333 0.87327 0.87097 0.91604 0.91779 0.91708 0.89937 0.77753 0.94968 0.89953 0.93664 0.98213 0.93223 0.95859 0.89707 0.84596 0.83179 0.83698 0.86115 0.88948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.48 14.32 67.78 0.97 -2.51 16 2 C -0.16 -3.27 9.52 25.65 0.24 -3.02 16 3 C -0.09 -2.04 5.55 29.85 0.17 -1.88 16 4 C -0.13 -3.25 4.88 30.59 0.15 -3.10 16 5 C 0.12 3.87 3.18 30.59 0.10 3.96 16 6 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 7 O -0.57 -22.10 9.78 -148.98 -1.46 -23.56 16 8 C 0.03 0.98 4.62 86.30 0.40 1.38 16 9 N -0.53 -22.01 4.65 -905.39 -4.21 -26.22 16 10 C 0.19 9.49 4.43 85.56 0.38 9.87 16 11 C -0.53 -28.10 7.15 25.60 0.18 -27.92 16 12 H 0.05 2.54 5.96 -2.91 -0.02 2.53 16 13 C 0.02 1.19 5.46 84.65 0.46 1.65 16 14 N -0.92 -54.12 13.29 21.45 0.28 -53.83 16 15 Si 0.94 43.27 29.54 68.60 2.03 45.29 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 18 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 19 C 0.10 3.76 4.93 85.56 0.42 4.18 16 20 C -0.08 -3.00 4.89 -19.87 -0.10 -3.10 16 21 C -0.11 -3.56 9.70 22.27 0.22 -3.34 16 22 C -0.13 -3.53 10.05 22.27 0.22 -3.31 16 23 C -0.13 -3.73 10.05 22.27 0.22 -3.51 16 24 C -0.14 -5.01 10.05 22.27 0.22 -4.79 16 25 C -0.12 -4.90 7.91 22.27 0.18 -4.72 16 26 H 0.10 1.66 7.84 -2.91 -0.02 1.64 16 27 H 0.11 1.57 8.06 -2.91 -0.02 1.55 16 28 H 0.11 2.10 8.06 -2.91 -0.02 2.08 16 29 H 0.07 1.51 7.79 -2.39 -0.02 1.49 16 30 H 0.06 1.71 7.82 -2.39 -0.02 1.69 16 31 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.37 14.34 9.05 -74.06 -0.67 13.67 16 34 H 0.03 1.25 6.10 -2.39 -0.01 1.24 16 35 H 0.08 2.41 7.79 -2.39 -0.02 2.39 16 36 H 0.05 2.53 5.26 -2.39 -0.01 2.51 16 37 H 0.00 -0.02 5.93 -2.38 -0.01 -0.03 16 38 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 39 H 0.02 1.01 6.56 -2.39 -0.02 0.99 16 40 H 0.08 2.72 7.79 -2.38 -0.02 2.70 16 41 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 42 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 43 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 44 H 0.12 3.97 8.06 -2.91 -0.02 3.95 16 45 H 0.09 4.52 7.82 -2.91 -0.02 4.49 16 Total: -1.00 -62.92 362.07 1.37 -61.56 By element: Atomic # 1 Polarization: 36.63 SS G_CDS: 0.29 Total: 36.91 kcal Atomic # 6 Polarization: -44.59 SS G_CDS: 4.44 Total: -40.15 kcal Atomic # 7 Polarization: -76.13 SS G_CDS: -3.92 Total: -80.05 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -1.46 Total: -23.56 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Total: -62.92 1.37 -61.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252589675.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.027 kcal (2) G-P(sol) polarization free energy of solvation -62.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds