Wall clock time and date at job start Tue Mar 31 2020 05:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.48040 * 2 1 4 4 C 1.53098 * 109.48232 * 120.02156 * 2 1 3 5 5 C 1.53170 * 109.16491 * 177.58911 * 4 2 1 6 6 H 1.09003 * 109.54396 * 62.88808 * 5 4 2 7 7 N 1.46495 * 109.54594 * 183.15277 * 5 4 2 8 8 C 1.36943 * 119.99994 * 64.72717 * 7 5 4 9 9 H 1.07997 * 119.99700 * 321.80631 * 8 7 5 10 10 C 1.38807 * 119.99843 * 141.80447 * 8 7 5 11 11 N 1.31623 * 119.99862 * 157.03837 * 10 8 7 12 12 Si 1.86800 * 120.00269 * 337.03503 * 10 8 7 13 13 H 1.48501 * 109.47083 * 95.40811 * 12 10 8 14 14 H 1.48497 * 109.47345 * 215.40790 * 12 10 8 15 15 H 1.48500 * 109.47182 * 335.40955 * 12 10 8 16 16 C 1.46499 * 120.00293 * 244.73031 * 7 5 4 17 17 C 1.50706 * 109.47040 * 89.99514 * 16 7 5 18 18 C 1.38232 * 120.00148 * 269.72498 * 17 16 7 19 19 C 1.38239 * 119.99704 * 179.78492 * 18 17 16 20 20 C 1.38235 * 119.99863 * 0.45062 * 19 18 17 21 21 C 1.38232 * 120.00184 * 359.80808 * 20 19 18 22 22 C 1.38230 * 120.00248 * 359.97438 * 21 20 19 23 23 C 1.53178 * 109.04061 * 303.02507 * 5 4 2 24 24 C 1.53093 * 109.16348 * 56.97448 * 23 5 4 25 25 O 1.42904 * 109.42735 * 302.39950 * 24 23 5 26 26 H 1.09001 * 109.47016 * 59.99860 * 1 2 3 27 27 H 1.09002 * 109.47139 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46896 * 300.00030 * 1 2 3 29 29 H 1.09001 * 109.47707 * 59.99954 * 3 2 1 30 30 H 1.09007 * 109.47388 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47552 * 300.00077 * 3 2 1 32 32 H 1.09000 * 109.52040 * 297.49965 * 4 2 1 33 33 H 1.08999 * 109.52014 * 57.68402 * 4 2 1 34 34 H 0.96998 * 119.99970 * 179.97438 * 11 10 8 35 35 H 1.09002 * 109.47269 * 209.99509 * 16 7 5 36 36 H 1.09003 * 109.46929 * 330.00032 * 16 7 5 37 37 H 1.07997 * 120.00017 * 0.02562 * 18 17 16 38 38 H 1.07997 * 119.99913 * 180.27312 * 19 18 17 39 39 H 1.08003 * 119.99694 * 179.83282 * 20 19 18 40 40 H 1.08005 * 119.99938 * 180.02562 * 21 20 19 41 41 H 1.07996 * 120.00269 * 180.02562 * 22 21 20 42 42 H 1.08998 * 109.52558 * 176.88362 * 23 5 4 43 43 H 1.09006 * 109.51673 * 297.00908 * 23 5 4 44 44 H 1.09001 * 109.48003 * 62.37937 * 24 23 5 45 45 H 1.08999 * 109.47869 * 182.40120 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0406 -0.7221 1.2497 5 6 3.5711 -0.7708 1.2123 6 1 3.9690 0.2436 1.2408 7 7 4.0658 -1.5257 2.3661 8 6 3.7781 -2.8591 2.4864 9 1 2.8069 -3.2304 2.1945 10 6 4.7347 -3.7334 2.9836 11 7 4.3654 -4.8767 3.5212 12 14 6.5463 -3.2877 2.8895 13 1 6.9710 -2.6688 4.1708 14 1 7.3459 -4.5146 2.6434 15 1 6.7623 -2.3252 1.7794 16 6 4.8683 -0.8542 3.3914 17 6 3.9593 -0.3037 4.4601 18 6 3.4589 0.9800 4.3479 19 6 2.6216 1.4833 5.3260 20 6 2.2922 0.7062 6.4207 21 6 2.7969 -0.5756 6.5355 22 6 3.6306 -1.0805 5.5553 23 6 4.0177 -1.4601 -0.0807 24 6 3.4307 -0.7094 -1.2790 25 8 2.0065 -0.6741 -1.1665 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6770 1.9563 0.8900 30 1 3.1303 1.4422 -0.0005 31 1 1.6770 1.9563 -0.8900 32 1 1.7149 -0.1841 2.1399 33 1 1.6443 -1.7373 1.2712 34 1 5.0339 -5.4878 3.8683 35 1 5.5610 -1.5685 3.8363 36 1 5.4299 -0.0382 2.9365 37 1 3.7190 1.5883 3.4943 38 1 2.2270 2.4846 5.2362 39 1 1.6402 1.1004 7.1862 40 1 2.5392 -1.1829 7.3907 41 1 4.0246 -2.0820 5.6448 42 1 5.1059 -1.4498 -0.1420 43 1 3.6623 -2.4905 -0.0856 44 1 3.8192 0.3088 -1.2958 45 1 3.7101 -1.2204 -2.2003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255546245.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:07 Heat of formation + Delta-G solvation = -19.437841 kcal Electronic energy + Delta-G solvation = -24666.921291 eV Core-core repulsion = 21456.067016 eV Total energy + Delta-G solvation = -3210.854276 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.01308 -39.97162 -37.57850 -34.47044 -34.09690 -33.44975 -31.64742 -31.27884 -28.84545 -28.16449 -27.33324 -25.66914 -23.97515 -23.28531 -22.29829 -21.72597 -20.12870 -18.63813 -17.56190 -17.22214 -16.98776 -16.70691 -16.24187 -15.96511 -15.71080 -15.43493 -15.12909 -14.86828 -14.35316 -14.22375 -14.09758 -14.06389 -13.75886 -13.30063 -13.24682 -13.02353 -12.88611 -12.80587 -12.70457 -12.47862 -12.24639 -12.03692 -11.95036 -11.89322 -11.72762 -11.63639 -11.40367 -10.84548 -10.62932 -10.28896 -9.68551 -9.49673 -8.72980 -8.18308 -5.54731 0.59410 0.63667 1.27179 1.37791 1.47470 2.40901 2.85223 2.95282 3.16553 3.41459 3.92569 4.00605 4.02561 4.05241 4.15940 4.22057 4.27464 4.36937 4.39340 4.43800 4.51938 4.56031 4.57533 4.71020 4.77231 4.83310 4.84876 4.88162 4.89621 4.95408 5.02454 5.14473 5.19609 5.25002 5.28395 5.32049 5.42492 5.47181 5.59366 5.68490 5.72835 5.92591 5.98369 6.22484 6.28233 6.46285 7.00690 7.65184 8.06379 9.01602 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.011478 B = 0.008464 C = 0.005680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.922663 B = 3307.359016 C = 4928.357515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.109 3.891 3 C -0.170 4.170 4 C -0.133 4.133 5 C 0.177 3.823 6 H 0.080 0.920 7 N -0.598 5.598 8 C -0.229 4.229 9 H 0.032 0.968 10 C -0.014 4.014 11 N -0.947 5.947 12 Si 0.929 3.071 13 H -0.280 1.280 14 H -0.313 1.313 15 H -0.251 1.251 16 C 0.163 3.837 17 C -0.097 4.097 18 C -0.117 4.117 19 C -0.121 4.121 20 C -0.131 4.131 21 C -0.133 4.133 22 C -0.125 4.125 23 C -0.158 4.158 24 C 0.068 3.932 25 O -0.395 6.395 26 H 0.074 0.926 27 H 0.043 0.957 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.028 0.972 34 H 0.260 0.740 35 H 0.036 0.964 36 H 0.075 0.925 37 H 0.134 0.866 38 H 0.151 0.849 39 H 0.146 0.854 40 H 0.125 0.875 41 H 0.083 0.917 42 H 0.062 0.938 43 H 0.041 0.959 44 H 0.073 0.927 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.161 17.555 -2.826 18.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.070 3.930 3 C -0.227 4.227 4 C -0.173 4.173 5 C 0.071 3.929 6 H 0.098 0.902 7 N -0.319 5.319 8 C -0.359 4.359 9 H 0.050 0.950 10 C -0.210 4.210 11 N -0.591 5.591 12 Si 0.758 3.242 13 H -0.208 1.208 14 H -0.242 1.242 15 H -0.175 1.175 16 C 0.039 3.961 17 C -0.100 4.100 18 C -0.136 4.136 19 C -0.138 4.138 20 C -0.149 4.149 21 C -0.151 4.151 22 C -0.145 4.145 23 C -0.197 4.197 24 C -0.009 4.009 25 O -0.315 6.315 26 H 0.093 0.907 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.047 0.953 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.093 0.907 37 H 0.152 0.848 38 H 0.169 0.831 39 H 0.164 0.836 40 H 0.143 0.857 41 H 0.101 0.899 42 H 0.081 0.919 43 H 0.060 0.940 44 H 0.091 0.909 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.214 17.326 -2.925 17.862 hybrid contribution 1.126 -1.323 0.564 1.826 sum -2.088 16.003 -2.362 16.311 Atomic orbital electron populations 1.21746 0.92059 1.02008 1.03260 1.21630 0.95213 0.92036 0.84160 1.22372 1.02028 0.94699 1.03572 1.22437 0.97785 0.99312 0.97745 1.20624 0.92444 0.94207 0.85584 0.90156 1.44261 1.62308 1.05499 1.19798 1.18295 0.95570 0.83139 1.38938 0.95021 1.25940 1.01120 0.95163 0.98776 1.70017 1.34557 1.13066 1.41465 0.86072 0.82903 0.76405 0.78794 1.20794 1.24179 1.17521 1.20330 0.91838 0.95377 0.88562 1.20751 0.99715 0.94589 0.94910 1.21156 0.98295 0.94354 0.99746 1.21423 0.97735 1.00795 0.93884 1.21366 1.00512 0.93746 0.99247 1.21291 0.97848 0.97057 0.98887 1.21046 0.99515 0.98462 0.95438 1.22517 1.00474 1.00380 0.96340 1.22628 0.80521 1.00161 0.97619 1.87889 1.21812 1.78236 1.43540 0.90678 0.93795 0.89970 0.90347 0.91765 0.90834 0.91953 0.95286 0.93140 0.94586 0.90674 0.84802 0.83136 0.83640 0.85750 0.89881 0.91901 0.93974 0.90943 0.88278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 8.85 71.98 0.64 -2.72 16 2 C 0.11 3.11 1.11 -10.76 -0.01 3.10 16 3 C -0.17 -3.63 7.93 71.98 0.57 -3.05 16 4 C -0.13 -4.79 4.28 30.68 0.13 -4.66 16 5 C 0.18 6.53 2.42 45.11 0.11 6.64 16 6 H 0.08 2.52 6.25 -2.39 -0.01 2.50 16 7 N -0.60 -26.91 1.99 -681.69 -1.36 -28.27 16 8 C -0.23 -12.74 8.45 84.03 0.71 -12.03 16 9 H 0.03 2.04 7.15 -2.91 -0.02 2.02 16 10 C -0.01 -0.80 5.29 84.86 0.45 -0.35 16 11 N -0.95 -59.41 13.97 21.65 0.30 -59.11 16 12 Si 0.93 45.95 25.12 68.60 1.72 47.68 16 13 H -0.28 -13.47 6.67 99.48 0.66 -12.80 16 14 H -0.31 -15.92 7.11 99.48 0.71 -15.21 16 15 H -0.25 -11.59 7.11 99.48 0.71 -10.88 16 16 C 0.16 6.77 4.63 85.64 0.40 7.16 16 17 C -0.10 -3.71 5.46 -19.86 -0.11 -3.82 16 18 C -0.12 -3.50 9.70 22.27 0.22 -3.28 16 19 C -0.12 -3.07 10.05 22.27 0.22 -2.84 16 20 C -0.13 -3.50 10.05 22.27 0.22 -3.28 16 21 C -0.13 -4.43 10.05 22.27 0.22 -4.20 16 22 C -0.13 -5.15 9.70 22.27 0.22 -4.93 16 23 C -0.16 -5.79 5.36 30.69 0.16 -5.62 16 24 C 0.07 1.94 6.51 72.01 0.47 2.41 16 25 O -0.39 -12.63 10.24 -148.98 -1.53 -14.15 16 26 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.06 1.35 4.98 -2.38 -0.01 1.34 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.03 1.28 7.09 -2.39 -0.02 1.27 16 34 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 35 H 0.04 1.68 3.35 -2.39 -0.01 1.67 16 36 H 0.08 2.63 7.83 -2.39 -0.02 2.61 16 37 H 0.13 3.32 8.06 -2.91 -0.02 3.29 16 38 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 39 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 40 H 0.12 3.70 8.06 -2.91 -0.02 3.68 16 41 H 0.08 3.98 8.06 -2.91 -0.02 3.96 16 42 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.04 1.88 7.46 -2.38 -0.02 1.86 16 44 H 0.07 1.69 6.34 -2.39 -0.02 1.68 16 45 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -68.36 346.21 4.67 -63.69 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.91 Total: 21.66 kcal Atomic # 6 Polarization: -36.11 SS G_CDS: 4.62 Total: -31.49 kcal Atomic # 7 Polarization: -86.32 SS G_CDS: -1.06 Total: -87.38 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: -1.53 Total: -14.15 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.72 Total: 47.68 kcal Total: -68.36 4.67 -63.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255546245.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.251 kcal (2) G-P(sol) polarization free energy of solvation -68.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds