Wall clock time and date at job start Tue Mar 31 2020 05:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.48289 * 2 1 4 4 C 1.53095 * 109.48123 * 120.02847 * 2 1 3 5 5 C 1.53175 * 109.21905 * 62.33846 * 4 2 1 6 6 H 1.09000 * 109.54149 * 297.14959 * 5 4 2 7 7 N 1.46494 * 109.54702 * 176.88125 * 5 4 2 8 8 C 1.36945 * 119.99592 * 300.00035 * 7 5 4 9 9 H 1.07993 * 120.00429 * 325.82474 * 8 7 5 10 10 C 1.38819 * 119.99423 * 145.82627 * 8 7 5 11 11 N 1.31618 * 120.00388 * 336.98755 * 10 8 7 12 12 Si 1.86801 * 119.99503 * 156.99763 * 10 8 7 13 13 H 1.48502 * 109.47263 * 89.99796 * 12 10 8 14 14 H 1.48505 * 109.46838 * 209.99417 * 12 10 8 15 15 H 1.48494 * 109.47113 * 329.99525 * 12 10 8 16 16 C 1.46493 * 120.00290 * 119.99938 * 7 5 4 17 17 C 1.50693 * 109.47297 * 85.23720 * 16 7 5 18 18 C 1.38237 * 119.99967 * 265.87223 * 17 16 7 19 19 C 1.38237 * 120.00089 * 179.78636 * 18 17 16 20 20 C 1.38238 * 119.99645 * 0.43992 * 19 18 17 21 21 C 1.38228 * 120.00060 * 359.81097 * 20 19 18 22 22 C 1.38228 * 120.00271 * 359.97438 * 21 20 19 23 23 C 1.53315 * 108.96237 * 56.95075 * 5 4 2 24 24 C 1.53087 * 109.19736 * 303.05922 * 23 5 4 25 25 O 1.42899 * 109.41669 * 57.61383 * 24 23 5 26 26 H 1.09003 * 109.46785 * 299.97767 * 1 2 3 27 27 H 1.08999 * 109.47152 * 59.97453 * 1 2 3 28 28 H 1.08994 * 109.47305 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47321 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46956 * 300.02653 * 3 2 1 31 31 H 1.09002 * 109.47066 * 60.02623 * 3 2 1 32 32 H 1.08998 * 109.52004 * 182.27768 * 4 2 1 33 33 H 1.09001 * 109.52285 * 302.40000 * 4 2 1 34 34 H 0.96995 * 120.00153 * 180.02562 * 11 10 8 35 35 H 1.09006 * 109.47360 * 205.23751 * 16 7 5 36 36 H 1.09002 * 109.47188 * 325.23289 * 16 7 5 37 37 H 1.08000 * 120.00023 * 359.97438 * 18 17 16 38 38 H 1.08000 * 119.99937 * 180.26916 * 19 18 17 39 39 H 1.08000 * 119.99477 * 179.83208 * 20 19 18 40 40 H 1.08000 * 119.99860 * 179.97438 * 21 20 19 41 41 H 1.08007 * 120.00435 * 179.97438 * 22 21 20 42 42 H 1.09007 * 109.50174 * 183.14000 * 23 5 4 43 43 H 1.08998 * 109.55566 * 63.01150 * 23 5 4 44 44 H 1.09002 * 109.48314 * 297.61995 * 24 23 5 45 45 H 1.09008 * 109.47587 * 177.58985 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0403 1.4424 0.0000 4 6 2.0406 -0.7223 1.2496 5 6 1.5757 -2.1813 1.2139 6 1 0.4867 -2.2178 1.2426 7 7 2.1223 -2.8983 2.3686 8 6 3.4781 -2.9882 2.5395 9 1 4.1272 -3.0609 1.6795 10 6 4.0180 -2.9860 3.8184 11 7 3.3415 -2.4602 4.8175 12 14 5.7049 -3.7292 4.1212 13 1 6.7448 -2.6832 3.9490 14 1 5.7679 -4.2668 5.5041 15 1 5.9429 -4.8283 3.1514 16 6 1.2188 -3.5190 3.3404 17 6 0.8313 -4.8935 2.8594 18 6 -0.3326 -5.0696 2.1346 19 6 -0.6858 -6.3298 1.6896 20 6 0.1202 -7.4154 1.9773 21 6 1.2813 -7.2401 2.7065 22 6 1.6368 -5.9793 3.1476 23 6 2.0763 -2.8322 -0.0808 24 6 1.5644 -2.0285 -1.2789 25 8 2.0065 -0.6743 -1.1664 26 1 -0.3633 0.5135 0.8902 27 1 -0.3633 0.5142 -0.8897 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1303 1.4422 -0.0005 30 1 1.6766 1.9564 -0.8898 31 1 1.6774 1.9561 0.8902 32 1 3.1298 -0.6874 1.2709 33 1 1.6431 -0.2350 2.1399 34 1 3.7189 -2.4584 5.7110 35 1 1.7216 -3.5996 4.3042 36 1 0.3239 -2.9059 3.4476 37 1 -0.9644 -4.2220 1.9134 38 1 -1.5929 -6.4666 1.1196 39 1 -0.1572 -8.4004 1.6319 40 1 1.9108 -8.0884 2.9315 41 1 2.5439 -5.8424 3.7178 42 1 1.7035 -3.8547 -0.1418 43 1 3.1663 -2.8410 -0.0869 44 1 0.4748 -2.0551 -1.2957 45 1 1.9530 -2.4624 -2.2003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255546247.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:11 Heat of formation + Delta-G solvation = -9.770688 kcal Electronic energy + Delta-G solvation = -24479.529301 eV Core-core repulsion = 21269.094225 eV Total energy + Delta-G solvation = -3210.435076 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.52297 -38.51236 -35.73065 -33.13135 -32.34653 -31.46781 -30.24542 -29.39421 -27.31310 -26.93699 -25.56335 -23.86755 -22.45830 -21.87950 -20.74951 -20.01765 -18.69378 -16.64473 -16.05044 -15.66708 -15.42423 -14.77316 -14.48925 -14.45158 -14.25736 -14.04102 -13.42156 -13.26722 -12.94158 -12.78975 -12.55962 -12.35046 -11.99211 -11.84356 -11.81685 -11.48561 -11.23585 -11.22182 -10.92903 -10.87996 -10.72825 -10.58784 -10.45021 -10.28105 -10.07801 -9.94638 -9.85357 -9.28226 -8.92270 -8.51440 -8.30867 -7.99585 -6.66493 -5.86267 -3.35643 2.01084 2.04933 3.32144 3.40924 3.44700 4.19528 4.37247 4.50492 5.19026 5.23863 5.27049 5.34551 5.43650 5.48108 5.49383 5.60927 5.61512 5.78553 5.82105 5.88666 5.93906 6.00302 6.03427 6.07503 6.12215 6.17570 6.24717 6.30108 6.33979 6.46760 6.50011 6.53987 6.68997 6.76108 6.78241 6.83785 7.05358 7.09685 7.15179 7.24983 7.41864 7.60686 7.72142 7.76801 7.79879 8.44993 9.12605 9.76191 10.32433 11.15637 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.011615 B = 0.007550 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.050385 B = 3707.851357 C = 5320.748039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.109 3.891 3 C -0.134 4.134 4 C -0.139 4.139 5 C 0.179 3.821 6 H 0.048 0.952 7 N -0.568 5.568 8 C -0.247 4.247 9 H 0.062 0.938 10 C 0.011 3.989 11 N -0.884 5.884 12 Si 0.888 3.112 13 H -0.286 1.286 14 H -0.289 1.289 15 H -0.278 1.278 16 C 0.173 3.827 17 C -0.071 4.071 18 C -0.125 4.125 19 C -0.129 4.129 20 C -0.145 4.145 21 C -0.127 4.127 22 C -0.098 4.098 23 C -0.162 4.162 24 C 0.064 3.936 25 O -0.380 6.380 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.255 0.745 35 H 0.108 0.892 36 H 0.030 0.970 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.119 0.881 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.043 0.957 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.065 -0.783 -6.813 9.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.070 3.930 3 C -0.191 4.191 4 C -0.178 4.178 5 C 0.072 3.928 6 H 0.067 0.933 7 N -0.286 5.286 8 C -0.376 4.376 9 H 0.079 0.921 10 C -0.189 4.189 11 N -0.527 5.527 12 Si 0.717 3.283 13 H -0.213 1.213 14 H -0.215 1.215 15 H -0.203 1.203 16 C 0.047 3.953 17 C -0.074 4.074 18 C -0.144 4.144 19 C -0.147 4.147 20 C -0.163 4.163 21 C -0.145 4.145 22 C -0.117 4.117 23 C -0.202 4.202 24 C -0.014 4.014 25 O -0.300 6.300 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.126 0.874 36 H 0.048 0.952 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.137 0.863 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.061 0.939 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.885 -0.631 -6.733 9.650 hybrid contribution 0.763 -0.723 0.345 1.106 sum -6.122 -1.353 -6.387 8.950 Atomic orbital electron populations 1.22426 0.96663 1.02372 1.01827 1.21575 0.92404 0.92606 0.86458 1.21719 1.01937 0.93916 1.01518 1.22530 1.02825 0.97091 0.95379 1.20399 0.94965 0.89872 0.87542 0.93338 1.43794 1.02460 1.57545 1.24765 1.18936 0.82278 1.44792 0.91602 0.92053 1.25022 0.97317 0.99406 0.97114 1.69996 1.38562 1.43520 1.00609 0.86533 0.84767 0.79709 0.77293 1.21265 1.21454 1.20305 1.20082 0.92757 0.85708 0.96707 1.21287 0.92430 0.98487 0.95158 1.21021 0.97530 0.96369 0.99501 1.20968 0.99459 0.93324 1.00966 1.20878 0.96152 0.98049 1.01242 1.21084 0.96965 0.97259 0.99227 1.21099 0.99225 0.91836 0.99555 1.22639 1.02714 0.99111 0.95707 1.22532 0.97875 0.82418 0.98529 1.87870 1.74050 1.24651 1.43431 0.91791 0.92732 0.91983 0.91977 0.92712 0.91440 0.90564 0.91697 0.93512 0.87419 0.95155 0.87343 0.87396 0.87431 0.87241 0.86333 0.92009 0.90983 0.93865 0.90100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.48 7.93 37.16 0.29 -2.18 16 2 C 0.11 1.78 1.11 -90.57 -0.10 1.68 16 3 C -0.13 -1.92 8.85 37.16 0.33 -1.59 16 4 C -0.14 -2.70 4.22 -26.59 -0.11 -2.81 16 5 C 0.18 3.57 2.42 -67.68 -0.16 3.40 16 6 H 0.05 0.93 6.35 -51.93 -0.33 0.60 16 7 N -0.57 -13.06 2.38 -166.74 -0.40 -13.46 16 8 C -0.25 -6.29 8.19 -15.05 -0.12 -6.41 16 9 H 0.06 1.62 6.77 -52.49 -0.36 1.26 16 10 C 0.01 0.29 4.90 -17.43 -0.09 0.21 16 11 N -0.88 -23.98 11.40 55.49 0.63 -23.34 16 12 Si 0.89 20.88 29.61 -169.99 -5.03 15.85 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 C 0.17 3.87 5.32 -5.20 -0.03 3.84 16 17 C -0.07 -1.41 5.46 -104.63 -0.57 -1.99 16 18 C -0.13 -2.20 9.69 -39.58 -0.38 -2.59 16 19 C -0.13 -2.03 10.05 -39.58 -0.40 -2.43 16 20 C -0.14 -2.26 10.05 -39.59 -0.40 -2.66 16 21 C -0.13 -2.17 10.05 -39.59 -0.40 -2.57 16 22 C -0.10 -1.95 9.72 -39.59 -0.38 -2.33 16 23 C -0.16 -3.02 5.44 -26.52 -0.14 -3.17 16 24 C 0.06 1.02 6.51 37.20 0.24 1.26 16 25 O -0.38 -6.63 10.24 -35.23 -0.36 -6.99 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.89 4.98 -51.93 -0.26 0.63 16 29 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.08 1.69 7.57 -51.93 -0.39 1.30 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 35 H 0.11 2.72 5.35 -51.93 -0.28 2.44 16 36 H 0.03 0.65 7.94 -51.93 -0.41 0.24 16 37 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 39 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 40 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 41 H 0.12 2.51 8.06 -52.48 -0.42 2.08 16 42 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 43 H 0.07 1.50 6.86 -51.93 -0.36 1.14 16 44 H 0.04 0.63 6.34 -51.93 -0.33 0.30 16 45 H 0.08 1.16 8.14 -51.92 -0.42 0.73 16 LS Contribution 350.74 15.07 5.29 5.29 Total: -1.00 -27.06 350.74 -9.64 -36.70 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -7.34 Total: 6.28 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: -2.42 Total: -20.33 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.24 Total: -36.80 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.36 Total: -6.99 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -27.06 -9.64 -36.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255546247.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.927 kcal (2) G-P(sol) polarization free energy of solvation -27.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds